Literature DB >> 21201677

2-(6,7-Dimethyl-3-methyl-sulfanyl-1-benzofuran-2-yl)acetic acid.

Hong Dae Choi, Pil Ja Seo, Byeng Wha Son, Uk Lee.   

Abstract

In the title compound, C(13)H(14)O(3)S, the methyl group of the methyl-sulfanyl substituent is almost perpendicular to the plane of the benzofuran fragment [80.5 (9)°]. The carboxylic acid groups are involved in inter-molecular O-H⋯O hydrogen bonds, which link the mol-ecules into centrosymmetric dimers. These dimers are further packed into stacks along the a axis by C-H⋯π inter-actions.

Entities:  

Year:  2008        PMID: 21201677      PMCID: PMC2960535          DOI: 10.1107/S1600536808024288

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Choi et al. (2007 ▶); Seo et al. (2007 ▶).

Experimental

Crystal data

C13H14O3S M = 250.30 Monoclinic, a = 18.050 (2) Å b = 4.9422 (5) Å c = 13.885 (1) Å β = 104.451 (2)° V = 1199.4 (2) Å3 Z = 4 Mo Kα radiation μ = 0.26 mm−1 T = 173 (2) K 0.40 × 0.20 × 0.10 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: none 6673 measured reflections 2595 independent reflections 2269 reflections with I > 2σ(I) R int = 0.035

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.119 S = 1.17 2595 reflections 161 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.42 e Å−3 Δρmin = −0.25 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 1998 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808024288/hb2769sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808024288/hb2769Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H14O3SF000 = 528
Mr = 250.30Dx = 1.386 Mg m3
Monoclinic, P21/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -P_2ybcCell parameters from 4188 reflections
a = 18.050 (2) Åθ = 3.0–28.3º
b = 4.9422 (5) ŵ = 0.26 mm1
c = 13.885 (1) ÅT = 173 (2) K
β = 104.451 (2)ºBlock, colorless
V = 1199.4 (2) Å30.40 × 0.20 × 0.10 mm
Z = 4
Bruker SMART CCD diffractometer2595 independent reflections
Radiation source: fine-focus sealed tube2269 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.035
Detector resolution: 10.0 pixels mm-1θmax = 27.0º
T = 173(2) Kθmin = 1.2º
φ and ω scansh = −19→23
Absorption correction: nonek = −5→6
6673 measured reflectionsl = −17→17
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: difmap (O-H) and geom (C-H)
R[F2 > 2σ(F2)] = 0.038H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.119  w = 1/[σ2(Fo2) + (0.0641P)2 + 0.395P] where P = (Fo2 + 2Fc2)/3
S = 1.17(Δ/σ)max < 0.001
2595 reflectionsΔρmax = 0.42 e Å3
161 parametersΔρmin = −0.25 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S0.36076 (2)0.71244 (9)0.66542 (3)0.02429 (16)
O10.22123 (6)0.3898 (3)0.81259 (8)0.0204 (3)
O20.40090 (8)0.3577 (3)0.94500 (11)0.0324 (4)
H2O0.4453 (16)0.310 (6)0.970 (2)0.049 (8)*
O30.45128 (7)0.7710 (3)0.96729 (10)0.0284 (3)
C10.29079 (9)0.5385 (3)0.70833 (12)0.0189 (4)
C20.23677 (9)0.3392 (4)0.65574 (12)0.0189 (4)
C30.21948 (10)0.2279 (4)0.56064 (13)0.0235 (4)
H30.24630.28110.51290.028*
C40.16167 (10)0.0365 (4)0.53846 (13)0.0252 (4)
H40.1490−0.04180.47390.030*
C50.12090 (10)−0.0469 (4)0.60716 (13)0.0229 (4)
C60.13800 (9)0.0629 (4)0.70363 (13)0.0209 (4)
C70.19588 (9)0.2551 (3)0.72277 (12)0.0187 (4)
C80.27891 (9)0.5601 (4)0.80010 (12)0.0192 (4)
C90.05928 (11)−0.2584 (4)0.57689 (16)0.0311 (5)
H9A0.0729−0.41810.61950.047*
H9B0.0543−0.30970.50740.047*
H9C0.0105−0.18490.58410.047*
C100.09738 (11)−0.0203 (4)0.78102 (15)0.0316 (5)
H10A0.11970.07520.84340.047*
H10B0.1029−0.21590.79210.047*
H10C0.04300.02560.75810.047*
C110.31794 (10)0.7259 (4)0.88784 (13)0.0221 (4)
H11A0.28650.72550.93700.026*
H11B0.32180.91520.86630.026*
C120.39713 (10)0.6221 (4)0.93705 (12)0.0197 (4)
C130.43420 (11)0.4564 (4)0.68607 (16)0.0315 (4)
H13A0.45290.42300.75760.047*
H13B0.47660.51830.65920.047*
H13C0.41300.28870.65260.047*
U11U22U33U12U13U23
S0.0226 (3)0.0218 (3)0.0288 (3)−0.00298 (17)0.00704 (18)0.00404 (18)
O10.0180 (6)0.0248 (7)0.0181 (6)−0.0020 (5)0.0039 (4)−0.0033 (5)
O20.0245 (7)0.0204 (7)0.0432 (8)0.0008 (5)−0.0081 (6)0.0012 (6)
O30.0204 (6)0.0229 (7)0.0377 (7)−0.0021 (5)−0.0005 (5)−0.0019 (6)
C10.0161 (8)0.0183 (8)0.0211 (8)0.0002 (6)0.0021 (6)0.0017 (7)
C20.0157 (8)0.0201 (9)0.0192 (8)0.0011 (6)0.0009 (6)0.0004 (7)
C30.0239 (9)0.0265 (10)0.0196 (8)−0.0009 (7)0.0041 (7)−0.0021 (7)
C40.0266 (9)0.0251 (10)0.0206 (8)−0.0013 (7)−0.0002 (7)−0.0060 (7)
C50.0179 (8)0.0190 (9)0.0277 (9)0.0006 (6)−0.0019 (7)−0.0017 (7)
C60.0165 (8)0.0190 (9)0.0258 (9)0.0008 (6)0.0027 (6)0.0019 (7)
C70.0171 (8)0.0195 (9)0.0178 (8)0.0019 (6)0.0009 (6)−0.0014 (7)
C80.0153 (8)0.0186 (9)0.0218 (8)0.0012 (6)0.0011 (6)−0.0010 (7)
C90.0256 (10)0.0243 (10)0.0384 (11)−0.0052 (7)−0.0012 (8)−0.0028 (8)
C100.0259 (10)0.0350 (11)0.0354 (10)−0.0061 (8)0.0106 (8)0.0015 (9)
C110.0206 (9)0.0203 (9)0.0221 (8)0.0014 (7)−0.0006 (7)−0.0047 (7)
C120.0218 (9)0.0209 (9)0.0156 (7)−0.0002 (7)0.0032 (6)−0.0027 (7)
C130.0258 (10)0.0310 (11)0.0402 (11)0.0012 (8)0.0127 (8)0.0018 (9)
S—C11.7506 (17)C5—C91.507 (2)
S—C131.803 (2)C6—C71.388 (2)
O1—C81.383 (2)C6—C101.502 (2)
O1—C71.387 (2)C8—C111.491 (2)
O2—C121.312 (2)C9—H9A0.9800
O2—H2O0.83 (3)C9—H9B0.9800
O3—C121.212 (2)C9—H9C0.9800
C1—C81.348 (2)C10—H10A0.9800
C1—C21.449 (2)C10—H10B0.9800
C2—C71.388 (2)C10—H10C0.9800
C2—C31.392 (2)C11—C121.512 (2)
C3—C41.385 (3)C11—H11A0.9900
C3—H30.9500C11—H11B0.9900
C4—C51.404 (3)C13—H13A0.9800
C4—H40.9500C13—H13B0.9800
C5—C61.407 (2)C13—H13C0.9800
C1—S—C1399.52 (9)C5—C9—H9A109.5
C8—O1—C7105.6 (1)C5—C9—H9B109.5
C12—O2—H2O110 (2)H9A—C9—H9B109.5
C8—C1—C2106.5 (2)C5—C9—H9C109.5
C8—C1—S125.5 (1)H9A—C9—H9C109.5
C2—C1—S127.9 (1)H9B—C9—H9C109.5
C7—C2—C3119.2 (2)C6—C10—H10A109.5
C7—C2—C1105.6 (1)C6—C10—H10B109.5
C3—C2—C1135.3 (2)H10A—C10—H10B109.5
C4—C3—C2117.3 (2)C6—C10—H10C109.5
C4—C3—H3121.3H10A—C10—H10C109.5
C2—C3—H3121.3H10B—C10—H10C109.5
C3—C4—C5122.9 (2)C8—C11—C12112.5 (1)
C3—C4—H4118.6C8—C11—H11A109.1
C5—C4—H4118.6C12—C11—H11A109.1
C4—C5—C6120.4 (2)C8—C11—H11B109.1
C4—C5—C9119.3 (2)C12—C11—H11B109.1
C6—C5—C9120.3 (2)H11A—C11—H11B107.8
C7—C6—C5115.0 (2)O3—C12—O2123.7 (2)
C7—C6—C10121.9 (2)O3—C12—C11122.7 (2)
C5—C6—C10123.1 (2)O2—C12—C11113.5 (2)
O1—C7—C6124.4 (2)S—C13—H13A109.5
O1—C7—C2110.4 (1)S—C13—H13B109.5
C6—C7—C2125.3 (2)H13A—C13—H13B109.5
C1—C8—O1111.9 (2)S—C13—H13C109.5
C1—C8—C11131.4 (2)H13A—C13—H13C109.5
O1—C8—C11116.7 (2)H13B—C13—H13C109.5
C13—S—C1—C896.66 (17)C10—C6—C7—O1−0.7 (3)
C13—S—C1—C2−80.90 (17)C5—C6—C7—C2−0.8 (3)
C8—C1—C2—C7−0.11 (19)C10—C6—C7—C2178.93 (17)
S—C1—C2—C7177.82 (13)C3—C2—C7—O1−179.69 (15)
C8—C1—C2—C3179.6 (2)C1—C2—C7—O10.06 (18)
S—C1—C2—C3−2.5 (3)C3—C2—C7—C60.6 (3)
C7—C2—C3—C4−0.1 (3)C1—C2—C7—C6−179.65 (16)
C1—C2—C3—C4−179.80 (19)C2—C1—C8—O10.13 (19)
C2—C3—C4—C50.0 (3)S—C1—C8—O1−177.87 (12)
C3—C4—C5—C6−0.3 (3)C2—C1—C8—C11178.24 (17)
C3—C4—C5—C9−179.47 (17)S—C1—C8—C110.2 (3)
C4—C5—C6—C70.7 (2)C7—O1—C8—C1−0.09 (18)
C9—C5—C6—C7179.84 (16)C7—O1—C8—C11−178.51 (14)
C4—C5—C6—C10−179.11 (17)C1—C8—C11—C12−72.5 (2)
C9—C5—C6—C100.1 (3)O1—C8—C11—C12105.56 (17)
C8—O1—C7—C6179.73 (16)C8—C11—C12—O3138.89 (18)
C8—O1—C7—C20.01 (18)C8—C11—C12—O2−42.1 (2)
C5—C6—C7—O1179.48 (15)
D—H···AD—HH···AD···AD—H···A
C9—H9A···Cgi0.982.863.617 (2)135
O2—H2O···O3ii0.83 (3)1.89 (3)2.717 (2)175 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C9—H9ACgi0.982.863.617 (2)135
O2—H2O⋯O3ii0.83 (3)1.89 (3)2.717 (2)175 (3)

Symmetry codes: (ii) (i) ; . Cg is the centroid of the C2–C7 benzene ring.

  1 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  1 in total
  1 in total

1.  2-(5-Bromo-3-methyl-sulfanyl-1-benzofuran-2-yl)acetic acid.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-02-21
  1 in total

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