Literature DB >> 21201674

Acetoguanamine N,N-dimethyl-formamide solvate.

Gustavo Portalone1.   

Abstract

The structure of acetoguanamine (or 2,4-diamino-6-methyl-1,3,5-triazine) has been determined as the N,N-dimethyl-formamide solvate, C(4)H(7)N(5)·C(3)H(7)NO. The mol-ecular components are associated in the crystal structure to form ribbons stabilized by three N-H⋯N and one N-H⋯O hydrogen bonds which involve NH groups as donors and the N atoms of the heterocyclic ring and the carbonyl O atom of the solvent as acceptors.

Entities:  

Year:  2008        PMID: 21201674      PMCID: PMC2960528          DOI: 10.1107/S1600536808023842

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Portalone & Colapietro (2007a ▶). For a general approach to the use of multiple-hydrogen-bonding DNA/RNA nucleobases as potential supra­molecular reagents, see: Portalone et al. (1999 ▶); Portalone & Colapietro (2007a ▶,b ▶ and references therein). For the computation of ring patterns formed by hydrogen bonds in crystal structures, see: Etter et al. (1990 ▶); Bernstein et al. (1995 ▶); Motherwell et al. (1999 ▶).

Experimental

Crystal data

C4H7N5·C3H7NO M = 198.24 Orthorhombic, a = 25.548 (2) Å b = 23.0626 (19) Å c = 7.2689 (9) Å V = 4282.8 (7) Å3 Z = 16 Mo Kα radiation μ = 0.09 mm−1 T = 298 (2) K 0.15 × 0.14 × 0.14 mm

Data collection

Oxford Diffraction Xcalibur S CCD diffractometer Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2006 ▶) T min = 0.985, T max = 0.990 27177 measured reflections 1127 independent reflections 698 reflections with I > 2σ(I) R int = 0.064

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.127 S = 0.91 1127 reflections 132 parameters 1 restraint H-atom parameters constrained Δρmax = 0.15 e Å−3 Δρmin = −0.14 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2006 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2006 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3? (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808023842/tk2285sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808023842/tk2285Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C4H7N5·C3H7NOF000 = 1696
Mr = 198.24Dx = 1.230 Mg m3
Orthorhombic, Fdd2Mo Kα radiation λ = 0.71073 Å
Hall symbol: F 2 -2dCell parameters from 11018 reflections
a = 25.548 (2) Åθ = 3.0–25.6º
b = 23.0626 (19) ŵ = 0.09 mm1
c = 7.2689 (9) ÅT = 298 (2) K
V = 4282.8 (7) Å3Tablets, colourless
Z = 160.15 × 0.14 × 0.14 mm
Oxford Diffraction Xcalibur S CCD diffractometer1127 independent reflections
Radiation source: Enhance (Mo) X-ray source698 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.064
Detector resolution: 16.0696 pixels mm-1θmax = 25.9º
T = 298(2) Kθmin = 3.0º
ω and φ scansh = −31→31
Absorption correction: multi-scan(CrysAlis RED; Oxford Diffraction, 2006)k = −27→28
Tmin = 0.985, Tmax = 0.990l = −8→8
27177 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.047H-atom parameters constrained
wR(F2) = 0.127  w = 1/[σ2(Fo2) + (0.0841P)2] where P = (Fo2 + 2Fc2)/3
S = 0.91(Δ/σ)max < 0.001
1127 reflectionsΔρmax = 0.15 e Å3
132 parametersΔρmin = −0.14 e Å3
1 restraintExtinction correction: none
Primary atom site location: structure-invariant direct methods
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.63312 (11)0.10945 (11)0.5765 (4)0.0495 (9)
C20.58170 (12)0.10315 (14)0.6030 (6)0.0431 (9)
N30.55453 (10)0.05414 (12)0.5797 (4)0.0447 (8)
C40.58328 (13)0.00862 (13)0.5267 (5)0.0416 (9)
N50.63552 (11)0.01049 (12)0.4927 (5)0.0471 (8)
C60.65836 (13)0.06118 (15)0.5210 (5)0.0463 (9)
N60.55533 (11)0.15017 (12)0.6581 (5)0.0592 (10)
H6A0.57210.18360.67530.071*
H6B0.52100.148080.67760.071*
N70.55992 (11)−0.04163 (11)0.5010 (5)0.0598 (10)
H7A0.5282−0.044630.51750.072*
H7B0.5771−0.07000.46840.072*
C80.71557 (14)0.06575 (18)0.4923 (7)0.0710 (13)
H8A0.73190.03290.53950.106*
H8B0.72820.09850.55220.106*
H8C0.72260.06870.36710.106*
O10.44754 (15)0.1783 (2)0.7397 (7)0.1196 (16)
N80.36343 (14)0.20435 (17)0.7802 (5)0.0738 (11)
C90.4016 (3)0.1667 (3)0.7697 (9)0.113 (2)
H90.39310.12790.78640.226*
C100.3107 (3)0.1868 (4)0.8156 (11)0.160 (4)
H10A0.29050.18910.70280.319*
H10B0.29540.21220.90740.319*
H10C0.31050.14720.86060.319*
C110.3722 (4)0.2647 (2)0.7568 (11)0.140 (3)
H11A0.38390.28130.87220.279*
H11B0.33990.28330.71890.279*
H11C0.39880.27060.66340.279*
U11U22U33U12U13U23
N10.0426 (16)0.0337 (16)0.072 (2)−0.0041 (13)−0.0033 (15)−0.0092 (16)
C20.0385 (18)0.0307 (18)0.060 (2)−0.0004 (15)−0.0048 (19)−0.0032 (16)
N30.0391 (14)0.0311 (14)0.0638 (19)−0.0001 (13)−0.0004 (15)−0.0059 (14)
C40.0400 (19)0.0273 (17)0.057 (2)−0.0005 (14)0.0046 (18)−0.0045 (15)
N50.0406 (16)0.0310 (15)0.070 (2)−0.0008 (12)−0.0009 (16)−0.0103 (15)
C60.0399 (17)0.0381 (19)0.061 (2)−0.0037 (16)−0.0027 (18)−0.0038 (18)
N60.0457 (17)0.0298 (15)0.102 (3)0.0009 (13)−0.0020 (18)−0.0156 (17)
N70.0414 (16)0.0319 (15)0.106 (3)−0.0013 (13)0.0115 (19)−0.0126 (18)
C80.042 (2)0.062 (2)0.108 (4)−0.0064 (19)0.006 (3)−0.019 (3)
O10.063 (2)0.153 (4)0.143 (4)0.013 (2)−0.005 (3)−0.037 (3)
N80.070 (2)0.072 (3)0.079 (3)0.006 (2)0.0083 (19)−0.012 (2)
C90.133 (6)0.109 (5)0.096 (5)0.018 (5)−0.008 (4)−0.017 (4)
C100.101 (5)0.266 (10)0.112 (5)−0.053 (6)0.036 (4)−0.050 (6)
C110.242 (9)0.073 (4)0.104 (5)−0.002 (4)0.001 (5)0.008 (4)
N1—C21.336 (4)C8—H8B0.9300
N1—C61.348 (5)C8—H8C0.9300
C2—N31.337 (4)O1—C91.223 (7)
C2—N61.338 (4)N8—C91.307 (7)
N3—C41.338 (4)N8—C111.419 (6)
C4—N71.317 (4)N8—C101.429 (7)
C4—N51.358 (4)C9—H90.9300
N5—C61.323 (4)C10—H10A0.9700
C6—C81.480 (5)C10—H10B0.9700
N6—H6A0.8907C10—H10C0.9700
N6—H6B0.8907C11—H11A0.9700
N7—H7A0.8226C11—H11B0.9700
N7—H7B0.8226C11—H11C0.9700
C8—H8A0.9300
C2—N1—C6115.1 (3)C6—C8—H8C109.5
N1—C2—N3125.8 (3)H8A—C8—H8C109.5
N1—C2—N6116.8 (3)H8B—C8—H8C109.5
N3—C2—N6117.5 (3)C9—N8—C11121.7 (6)
C2—N3—C4114.5 (3)C9—N8—C10121.7 (6)
N7—C4—N3118.9 (3)C11—N8—C10116.6 (6)
N7—C4—N5116.6 (3)O1—C9—N8125.6 (7)
N3—C4—N5124.5 (3)O1—C9—H9117.2
C6—N5—C4115.7 (3)N8—C9—H9117.2
N5—C6—N1124.4 (3)N8—C10—H10A109.5
N5—C6—C8118.5 (3)N8—C10—H10B109.5
N1—C6—C8117.1 (3)H10A—C10—H10B109.5
C2—N6—H6A120.0N8—C10—H10C109.5
C2—N6—H6B120.0H10A—C10—H10C109.5
H6A—N6—H6B120.0H10B—C10—H10C109.5
C4—N7—H7A120.0N8—C11—H11A109.5
C4—N7—H7B120.0N8—C11—H11B109.5
H7A—N7—H7B120.0H11A—C11—H11B109.5
C6—C8—H8A109.5N8—C11—H11C109.5
C6—C8—H8B109.5H11A—C11—H11C109.5
H8A—C8—H8B109.5H11B—C11—H11C109.5
C6—N1—C2—N30.2 (6)N3—C4—N5—C62.1 (5)
C6—N1—C2—N6180.0 (4)C4—N5—C6—N1−1.2 (6)
N1—C2—N3—C40.6 (6)C4—N5—C6—C8178.1 (4)
N6—C2—N3—C4−179.2 (3)C2—N1—C6—N50.2 (6)
C2—N3—C4—N7179.7 (4)C2—N1—C6—C8−179.2 (4)
C2—N3—C4—N5−1.8 (5)C11—N8—C9—O10.0 (10)
N7—C4—N5—C6−179.4 (4)C10—N8—C9—O1179.9 (6)
D—H···AD—HH···AD···AD—H···A
N6—H6B···O10.892.052.890 (5)157
N6—H6A···N5i0.892.133.022 (4)174
N7—H7B···N1ii0.822.182.989 (4)168
N7—H7A···N3iii0.822.172.993 (4)176
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N6—H6B⋯O10.892.052.890 (5)157
N6—H6A⋯N5i0.892.133.022 (4)174
N7—H7B⋯N1ii0.822.182.989 (4)168
N7—H7A⋯N3iii0.822.172.993 (4)176

Symmetry codes: (i) ; (ii) ; (iii) .

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