Literature DB >> 21201663

4,4-Difluoro-1,3,5,7-tetra-methyl-4-bora-3a,4a-diaza-s-indacene.

Hai-Jun Xu1.   

Abstract

In the title compound, C(13)H(15)BF(2)N(2), the two pyrrole rings are almost coplanar, with a dihedral angle of 3.08 (10)°. The BF(2) plane is almost perpendicular to the boron-dipyrromethene ring plane, with a dihedral angle of 89.99 (7)°.

Entities:  

Year:  2008        PMID: 21201663      PMCID: PMC2960520          DOI: 10.1107/S1600536808024057

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Bergström et al. (2002 ▶); Kollmannsberger et al. (1998 ▶); Kuhn et al. (1990 ▶); Trieflinger et al. (2005 ▶).

Experimental

Crystal data

C13H15BF2N2 M = 248.08 Monoclinic, a = 7.6909 (8) Å b = 14.3392 (15) Å c = 11.8334 (10) Å β = 111.108 (5)° V = 1217.4 (2) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 293 (2) K 0.30 × 0.20 × 0.20 mm

Data collection

Rigaku Mercury2 diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2005 ▶) T min = 0.961, T max = 0.974 6540 measured reflections 2396 independent reflections 1963 reflections with I > 2σ(I) R int = 0.019

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.126 S = 1.06 2396 reflections 167 parameters H-atom parameters constrained Δρmax = 0.27 e Å−3 Δρmin = −0.24 e Å−3 Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808024057/at2574sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808024057/at2574Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H15B1F2N2F000 = 520
Mr = 248.08Dx = 1.353 Mg m3
Monoclinic, P21/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2682 reflections
a = 7.6909 (8) Åθ = 2.8–27.9º
b = 14.3392 (15) ŵ = 0.10 mm1
c = 11.8334 (10) ÅT = 293 (2) K
β = 111.108 (5)ºBlock, red
V = 1217.4 (2) Å30.30 × 0.20 × 0.20 mm
Z = 4
Rigaku Mercury2 diffractometer2396 independent reflections
Radiation source: fine-focus sealed tube1963 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.019
Detector resolution: 13.6612 pixels mm-1θmax = 26.0º
T = 293(2) Kθmin = 2.3º
φ and ω scansh = −8→9
Absorption correction: empirical (using intensity measurements)(CrystalClear; Rigaku, 2005)k = −17→16
Tmin = 0.961, Tmax = 0.974l = −14→12
6540 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.040H-atom parameters constrained
wR(F2) = 0.126  w = 1/[σ2(Fo2) + (0.0669P)2 + 0.3386P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max = 0.007
2396 reflectionsΔρmax = 0.27 e Å3
167 parametersΔρmin = −0.24 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
F10.90473 (14)−0.13462 (7)0.77523 (9)0.0416 (3)
F20.59217 (14)−0.11875 (7)0.68465 (9)0.0429 (3)
N10.77362 (17)0.01985 (9)0.76358 (11)0.0296 (3)
N20.72797 (18)−0.10054 (9)0.90212 (12)0.0302 (3)
C10.7917 (2)0.06479 (12)0.66762 (15)0.0333 (4)
C20.8203 (2)0.15979 (12)0.69475 (16)0.0368 (4)
H2A0.83710.20540.64380.044*
C30.8194 (2)0.17455 (11)0.80964 (15)0.0331 (4)
C40.7899 (2)0.08638 (11)0.85312 (14)0.0296 (4)
C50.7747 (2)0.06086 (11)0.96176 (14)0.0292 (4)
H5A0.78650.10651.01990.035*
C60.7427 (2)−0.03013 (11)0.98692 (14)0.0296 (4)
C70.7146 (2)−0.06999 (12)1.08848 (15)0.0331 (4)
C80.6836 (2)−0.16395 (12)1.06306 (16)0.0377 (4)
H8A0.6607−0.20831.11330.045*
C90.6926 (2)−0.18101 (11)0.94874 (15)0.0343 (4)
C100.7815 (3)0.01588 (13)0.55463 (16)0.0419 (4)
H10A0.8497−0.04160.57490.063*
H10B0.83460.05470.50930.063*
H10C0.65360.00300.50670.063*
C110.8416 (3)0.26491 (12)0.87641 (17)0.0411 (4)
H11A0.91680.30660.84980.062*
H11B0.90110.25390.96180.062*
H11C0.72130.29230.86060.062*
C120.7199 (2)−0.01832 (13)1.19915 (16)0.0388 (4)
H12A0.6385−0.04821.23340.058*
H12B0.67970.04481.17790.058*
H12C0.8449−0.01831.25740.058*
C130.6716 (3)−0.27203 (12)0.88435 (17)0.0426 (4)
H13A0.7826−0.28510.86800.064*
H13B0.5669−0.26900.80940.064*
H13C0.6516−0.32060.93420.064*
B10.7490 (2)−0.08597 (13)0.77801 (16)0.0310 (4)
U11U22U33U12U13U23
F10.0484 (6)0.0363 (6)0.0467 (6)0.0106 (4)0.0251 (5)−0.0002 (4)
F20.0463 (6)0.0438 (6)0.0326 (6)−0.0101 (4)0.0070 (5)−0.0031 (4)
N10.0304 (7)0.0317 (7)0.0272 (7)0.0027 (5)0.0109 (6)0.0002 (5)
N20.0303 (7)0.0297 (7)0.0298 (7)0.0031 (5)0.0099 (6)0.0009 (5)
C10.0331 (8)0.0369 (9)0.0312 (9)0.0055 (7)0.0132 (7)0.0039 (7)
C20.0432 (9)0.0346 (9)0.0366 (9)0.0045 (7)0.0192 (8)0.0060 (7)
C30.0321 (8)0.0319 (8)0.0371 (9)0.0031 (6)0.0145 (7)0.0018 (7)
C40.0271 (8)0.0311 (8)0.0299 (8)0.0035 (6)0.0093 (6)−0.0009 (6)
C50.0257 (7)0.0311 (8)0.0301 (8)0.0031 (6)0.0094 (6)−0.0023 (6)
C60.0270 (7)0.0337 (8)0.0278 (8)0.0046 (6)0.0095 (6)−0.0005 (6)
C70.0296 (8)0.0383 (9)0.0312 (9)0.0046 (7)0.0108 (7)0.0036 (7)
C80.0418 (9)0.0367 (9)0.0364 (9)0.0023 (7)0.0163 (8)0.0081 (7)
C90.0343 (9)0.0325 (9)0.0346 (9)0.0023 (6)0.0104 (7)0.0030 (7)
C100.0510 (11)0.0448 (10)0.0336 (9)0.0035 (8)0.0197 (8)−0.0003 (7)
C110.0495 (10)0.0319 (9)0.0447 (10)−0.0003 (8)0.0204 (9)−0.0010 (7)
C120.0411 (9)0.0460 (10)0.0318 (9)0.0039 (8)0.0163 (8)0.0005 (7)
C130.0511 (11)0.0327 (9)0.0421 (10)−0.0013 (8)0.0146 (8)0.0008 (7)
B10.0326 (9)0.0312 (9)0.0287 (9)0.0011 (7)0.0105 (7)−0.0004 (7)
F1—B11.397 (2)C7—C81.382 (2)
F2—B11.392 (2)C7—C121.492 (2)
N1—C11.356 (2)C8—C91.401 (2)
N1—C41.3974 (19)C8—H8A0.9300
N1—B11.546 (2)C9—C131.490 (2)
N2—C91.348 (2)C10—H10A0.9600
N2—C61.399 (2)C10—H10B0.9600
N2—B11.548 (2)C10—H10C0.9600
C1—C21.399 (2)C11—H11A0.9600
C1—C101.487 (2)C11—H11B0.9600
C2—C31.378 (2)C11—H11C0.9600
C2—H2A0.9300C12—H12A0.9600
C3—C41.414 (2)C12—H12B0.9600
C3—C111.495 (2)C12—H12C0.9600
C4—C51.382 (2)C13—H13A0.9600
C5—C61.380 (2)C13—H13B0.9600
C5—H5A0.9300C13—H13C0.9600
C6—C71.416 (2)
C1—N1—C4107.60 (14)C8—C9—C13127.78 (15)
C1—N1—B1127.78 (14)C1—C10—H10A109.5
C4—N1—B1124.57 (13)C1—C10—H10B109.5
C9—N2—C6107.47 (13)H10A—C10—H10B109.5
C9—N2—B1127.51 (13)C1—C10—H10C109.5
C6—N2—B1125.02 (13)H10A—C10—H10C109.5
N1—C1—C2109.00 (14)H10B—C10—H10C109.5
N1—C1—C10122.75 (15)C3—C11—H11A109.5
C2—C1—C10128.25 (15)C3—C11—H11B109.5
C3—C2—C1108.66 (14)H11A—C11—H11B109.5
C3—C2—H2A125.7C3—C11—H11C109.5
C1—C2—H2A125.7H11A—C11—H11C109.5
C2—C3—C4106.26 (14)H11B—C11—H11C109.5
C2—C3—C11127.90 (15)C7—C12—H12A109.5
C4—C3—C11125.84 (15)C7—C12—H12B109.5
C5—C4—N1120.68 (14)H12A—C12—H12B109.5
C5—C4—C3130.84 (15)C7—C12—H12C109.5
N1—C4—C3108.48 (14)H12A—C12—H12C109.5
C6—C5—C4122.19 (14)H12B—C12—H12C109.5
C6—C5—H5A118.9C9—C13—H13A109.5
C4—C5—H5A118.9C9—C13—H13B109.5
C5—C6—N2120.14 (14)H13A—C13—H13B109.5
C5—C6—C7131.18 (15)C9—C13—H13C109.5
N2—C6—C7108.66 (14)H13A—C13—H13C109.5
C8—C7—C6106.01 (14)H13B—C13—H13C109.5
C8—C7—C12128.52 (15)F2—B1—F1108.55 (14)
C6—C7—C12125.47 (16)F2—B1—N1110.45 (13)
C7—C8—C9108.40 (15)F1—B1—N1110.32 (13)
C7—C8—H8A125.8F2—B1—N2110.53 (13)
C9—C8—H8A125.8F1—B1—N2109.77 (13)
N2—C9—C8109.46 (14)N1—B1—N2107.21 (13)
N2—C9—C13122.76 (15)
  3 in total

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2.  A short history of SHELX.

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Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Dimers of dipyrrometheneboron difluoride (BODIPY) with light spectroscopic applications in chemistry and biology.

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