Literature DB >> 21201625

Aqua-(hexa-methyl-enetetra-mine-κN)bis-(methanol-κO)bis-(thio-cyanato-κN)cobalt(II).

Wei-Li Shang1, Yan Bai, Chao-Zhong Ma, Zhi-Min Li.   

Abstract

In the title complex, [Co(NCS)(2)(C(6)n class="Species">H(12)N(4))(CH(4)O)(2)(H(2)O)], the six-coordinated Co atom has a slightly distorted octa-hedral geometry. The molecules are linked by intermolecular O-H⋯S and O-H⋯N hydrogen bonds, forming a three- dimensional crystal structure. Intramolecular C-H⋯N and C-H⋯O hydrogen bonds are also present.

Entities:  

Year:  2008        PMID: 21201625      PMCID: PMC2960658          DOI: 10.1107/S160053680802357X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For information on the self-assembly of transition-metal complexes, see: Guo et al. (2002 ▶); Kumar et al. (2007 ▶); Venkateswaran et al. (2007 ▶); Chi et al. (2008 ▶). For complexes including hexa­methyl­enetetra­mine (n class="Chemical">hmt) as ligand, see: Liu et al. (2006 ▶); Zhang et al. (1999 ▶); Meng et al. (2001 ▶); Li et al. (2002 ▶, 2007 ▶); Banerjee et al. (2007 ▶).

Experimental

Crystal data

[Co(NCS)2(n class="CellLine">C6H12N4)(CH4O)2(H2O)] M = 397.39 Orthorhombic, a = 14.1128 (8) Å b = 15.3684 (9) Å c = 15.9839 (9) Å V = 3466.8 (3) Å3 Z = 8 Mo Kα radiation μ = 1.25 mm−1 T = 296 (2) K 0.30 × 0.30 × 0.25 mm

Data collection

Bruker APEXII diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.691, T max = 0.730 20785 measured reflections 4287 independent reflections 3528 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.029 wR(F 2) = 0.075 S = 1.04 4287 reflections 217 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.64 e Å−3 Δρmin = −0.61 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAIn class="Chemical">NT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053680802357X/bh2177sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680802357X/bh2177Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Co(NCS)2(C6H12N4)(CH4O)2(H2O)]F000 = 1656
Mr = 397.39Dx = 1.523 Mg m3
Orthorhombic, PbcaMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 7990 reflections
a = 14.1128 (8) Åθ = 2.3–28.3º
b = 15.3684 (9) ŵ = 1.25 mm1
c = 15.9839 (9) ÅT = 296 (2) K
V = 3466.8 (3) Å3Block, purple
Z = 80.30 × 0.30 × 0.25 mm
Bruker APEXII diffractometer4287 independent reflections
Radiation source: sealed tube3528 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.022
T = 296(2) Kθmax = 28.3º
φ and ω scansθmin = 2.3º
Absorption correction: multi-scan(SADABS; Bruker, 2000)h = −14→18
Tmin = 0.691, Tmax = 0.730k = −19→20
20785 measured reflectionsl = −18→21
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.029H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.075  w = 1/[σ2(Fo2) + (0.0359P)2 + 1.3724P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max = 0.001
4287 reflectionsΔρmax = 0.64 e Å3
217 parametersΔρmin = −0.61 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
xyzUiso*/Ueq
Co10.553065 (15)1.038335 (14)0.283547 (14)0.02795 (7)
N10.65439 (11)0.97495 (10)0.35331 (10)0.0373 (3)
C10.71280 (12)0.94096 (11)0.39145 (11)0.0309 (3)
S10.79561 (4)0.89311 (4)0.44512 (4)0.05772 (17)
N20.45742 (11)1.10745 (11)0.21469 (10)0.0412 (4)
C20.40515 (12)1.14790 (11)0.17538 (10)0.0318 (3)
S20.33147 (4)1.20788 (3)0.12175 (3)0.04690 (13)
N30.43978 (9)0.94296 (9)0.32720 (8)0.0262 (3)
N40.27067 (9)0.91344 (9)0.34713 (9)0.0310 (3)
N50.38399 (10)0.86701 (9)0.45350 (9)0.0329 (3)
N60.37919 (10)0.79376 (9)0.31828 (9)0.0320 (3)
C30.34122 (11)0.97472 (10)0.31390 (11)0.0295 (3)
H3A0.33361.03060.34120.035*
H3B0.33040.98290.25450.035*
C40.45227 (12)0.92901 (11)0.41871 (10)0.0311 (3)
H4A0.51590.90780.42910.037*
H4B0.44550.98430.44730.037*
C50.44845 (11)0.85686 (11)0.28545 (10)0.0301 (3)
H5A0.43870.86390.22580.036*
H5B0.51200.83440.29390.036*
C60.28784 (12)0.90063 (12)0.43761 (10)0.0359 (4)
H6A0.27980.95560.46650.043*
H6B0.24160.86000.45970.043*
C70.28332 (12)0.82913 (11)0.30472 (11)0.0341 (4)
H7A0.27260.83640.24520.041*
H7B0.23680.78810.32570.041*
C80.39459 (13)0.78357 (11)0.40908 (11)0.0355 (4)
H8A0.34930.74200.43120.043*
H8B0.45770.76070.41880.043*
O10.52358 (11)1.12213 (8)0.39015 (8)0.0416 (3)
H10.5632 (16)1.1230 (15)0.4256 (16)0.054 (7)*
C90.4697 (2)1.19973 (17)0.39250 (16)0.0775 (9)
H9A0.43011.19960.44130.116*
H9D0.43081.20330.34330.116*
H9B0.51161.24890.39450.116*
O20.58559 (9)0.95999 (9)0.17962 (8)0.0368 (3)
H20.6396 (16)0.9493 (13)0.1762 (13)0.039 (6)*
C100.54971 (15)0.97087 (17)0.09672 (13)0.0556 (6)
H10D0.57000.92300.06250.083*
H10A0.57331.02430.07370.083*
H10B0.48170.97260.09830.083*
O1W0.66088 (11)1.12763 (9)0.24788 (10)0.0439 (3)
H1WA0.6425 (17)1.1713 (16)0.2319 (16)0.054 (7)*
H1WB0.7014 (18)1.1426 (16)0.2873 (16)0.063 (8)*
U11U22U33U12U13U23
Co10.02528 (12)0.02913 (12)0.02945 (12)0.00166 (8)−0.00442 (8)0.00671 (8)
N10.0328 (8)0.0382 (8)0.0408 (8)0.0019 (6)−0.0058 (6)0.0072 (6)
C10.0299 (8)0.0296 (8)0.0333 (8)−0.0020 (6)−0.0040 (7)−0.0008 (6)
S10.0564 (3)0.0461 (3)0.0707 (4)0.0114 (2)−0.0366 (3)−0.0015 (3)
N20.0362 (8)0.0436 (9)0.0437 (9)0.0042 (7)−0.0059 (7)0.0111 (7)
C20.0306 (8)0.0336 (8)0.0314 (8)−0.0002 (7)−0.0020 (7)0.0022 (7)
S20.0437 (3)0.0503 (3)0.0468 (3)0.0126 (2)−0.0123 (2)0.0089 (2)
N30.0253 (6)0.0283 (7)0.0251 (6)−0.0001 (5)−0.0025 (5)0.0014 (5)
N40.0265 (7)0.0330 (7)0.0336 (7)0.0002 (5)0.0006 (6)−0.0010 (6)
N50.0338 (7)0.0373 (8)0.0277 (7)−0.0022 (6)0.0008 (6)0.0043 (6)
N60.0356 (7)0.0268 (7)0.0336 (7)−0.0008 (6)0.0021 (6)−0.0015 (6)
C30.0284 (8)0.0286 (8)0.0314 (8)0.0024 (6)−0.0020 (6)0.0011 (6)
C40.0327 (9)0.0363 (9)0.0243 (7)−0.0034 (7)−0.0044 (6)0.0020 (6)
C50.0307 (8)0.0299 (8)0.0297 (8)0.0017 (6)0.0031 (6)−0.0018 (6)
C60.0335 (9)0.0435 (10)0.0308 (8)0.0009 (7)0.0065 (7)−0.0010 (7)
C70.0314 (9)0.0346 (9)0.0364 (9)−0.0058 (7)−0.0025 (7)−0.0032 (7)
C80.0379 (9)0.0310 (8)0.0377 (9)−0.0003 (7)0.0013 (7)0.0075 (7)
O10.0519 (8)0.0371 (7)0.0358 (7)0.0080 (6)−0.0109 (6)−0.0021 (5)
C90.116 (2)0.0597 (15)0.0565 (15)0.0428 (15)−0.0207 (15)−0.0112 (12)
O20.0253 (6)0.0531 (8)0.0319 (6)0.0018 (5)−0.0003 (5)0.0017 (5)
C100.0418 (12)0.0907 (18)0.0343 (10)0.0045 (11)−0.0045 (8)0.0006 (10)
O1W0.0411 (8)0.0344 (7)0.0562 (9)−0.0044 (6)−0.0076 (7)0.0132 (7)
Co1—N22.0400 (15)C3—H3B0.9700
Co1—N12.0585 (15)C4—H4A0.9700
Co1—O22.1024 (13)C4—H4B0.9700
Co1—O1W2.1268 (14)C5—H5A0.9700
Co1—O12.1760 (13)C5—H5B0.9700
Co1—N32.2785 (13)C6—H6A0.9700
N1—C11.151 (2)C6—H6B0.9700
C1—S11.6256 (17)C7—H7A0.9700
N2—C21.151 (2)C7—H7B0.9700
C2—S21.6327 (17)C8—H8A0.9700
N3—C51.487 (2)C8—H8B0.9700
N3—C41.489 (2)O1—C91.415 (2)
N3—C31.489 (2)O1—H10.80 (2)
N4—C31.470 (2)C9—H9A0.9600
N4—C71.473 (2)C9—H9D0.9600
N4—C61.480 (2)C9—H9B0.9600
N5—C41.465 (2)O2—C101.428 (2)
N5—C81.473 (2)O2—H20.78 (2)
N5—C61.474 (2)C10—H10D0.9600
N6—C51.473 (2)C10—H10A0.9600
N6—C71.474 (2)C10—H10B0.9600
N6—C81.476 (2)O1W—H1WA0.76 (3)
C3—H3A0.9700O1W—H1WB0.88 (3)
N2—Co1—N1176.69 (6)N6—C5—N3111.79 (12)
N2—Co1—O290.94 (6)N6—C5—H5A109.3
N1—Co1—O290.31 (6)N3—C5—H5A109.3
N2—Co1—O1W89.59 (6)N6—C5—H5B109.3
N1—Co1—O1W87.34 (6)N3—C5—H5B109.3
O2—Co1—O1W90.09 (6)H5A—C5—H5B107.9
N2—Co1—O189.30 (6)N5—C6—N4111.46 (13)
N1—Co1—O189.35 (6)N5—C6—H6A109.3
O2—Co1—O1178.06 (6)N4—C6—H6A109.3
O1W—Co1—O187.99 (6)N5—C6—H6B109.3
N2—Co1—N392.06 (6)N4—C6—H6B109.3
N1—Co1—N390.98 (5)H6A—C6—H6B108.0
O2—Co1—N391.53 (5)N4—C7—N6111.58 (13)
O1W—Co1—N3177.67 (6)N4—C7—H7A109.3
O1—Co1—N390.39 (5)N6—C7—H7A109.3
C1—N1—Co1178.20 (15)N4—C7—H7B109.3
N1—C1—S1179.8 (2)N6—C7—H7B109.3
C2—N2—Co1178.33 (16)H7A—C7—H7B108.0
N2—C2—S2178.14 (17)N5—C8—N6111.51 (13)
C5—N3—C4107.64 (13)N5—C8—H8A109.3
C5—N3—C3107.72 (12)N6—C8—H8A109.3
C4—N3—C3107.34 (12)N5—C8—H8B109.3
C5—N3—Co1112.16 (9)N6—C8—H8B109.3
C4—N3—Co1108.08 (9)H8A—C8—H8B108.0
C3—N3—Co1113.63 (9)C9—O1—Co1128.49 (13)
C3—N4—C7108.37 (13)C9—O1—H1110.2 (17)
C3—N4—C6109.12 (13)Co1—O1—H1115.6 (17)
C7—N4—C6108.23 (13)O1—C9—H9A109.5
C4—N5—C8108.45 (13)O1—C9—H9D109.5
C4—N5—C6108.18 (13)H9A—C9—H9D109.5
C8—N5—C6108.39 (14)O1—C9—H9B109.5
C5—N6—C7108.29 (13)H9A—C9—H9B109.5
C5—N6—C8108.81 (13)H9D—C9—H9B109.5
C7—N6—C8108.60 (13)C10—O2—Co1126.06 (13)
N4—C3—N3111.79 (12)C10—O2—H2107.8 (16)
N4—C3—H3A109.3Co1—O2—H2112.9 (16)
N3—C3—H3A109.3O2—C10—H10D109.5
N4—C3—H3B109.3O2—C10—H10A109.5
N3—C3—H3B109.3H10D—C10—H10A109.5
H3A—C3—H3B107.9O2—C10—H10B109.5
N5—C4—N3112.87 (13)H10D—C10—H10B109.5
N5—C4—H4A109.0H10A—C10—H10B109.5
N3—C4—H4A109.0Co1—O1W—H1WA114.4 (19)
N5—C4—H4B109.0Co1—O1W—H1WB116.1 (16)
N3—C4—H4B109.0H1WA—O1W—H1WB103 (2)
H4A—C4—H4B107.8
D—H···AD—HH···AD···AD—H···A
C4—H4A···N10.972.523.119 (2)120
C4—H4B···O10.972.563.167 (2)121
C9—H9D···N20.962.563.181 (3)123
O1—H1···N5i0.80 (2)2.08 (3)2.824 (2)156 (2)
O1W—H1WA···N6ii0.76 (2)2.07 (2)2.821 (2)168 (3)
O2—H2···N4iii0.78 (2)1.97 (2)2.7417 (18)172 (2)
O1W—H1WB···S2iii0.88 (3)2.55 (3)3.4146 (16)168 (2)
Co1—N22.0400 (15)
Co1—N12.0585 (15)
Co1—O22.1024 (13)
Co1—O1W2.1268 (14)
Co1—O12.1760 (13)
Co1—N32.2785 (13)
N2—Co1—N1176.69 (6)
N2—Co1—O290.94 (6)
N1—Co1—O290.31 (6)
N2—Co1—O1W89.59 (6)
N1—Co1—O1W87.34 (6)
O2—Co1—O1W90.09 (6)
N2—Co1—O189.30 (6)
N1—Co1—O189.35 (6)
O2—Co1—O1178.06 (6)
O1W—Co1—O187.99 (6)
N2—Co1—N392.06 (6)
N1—Co1—N390.98 (5)
O2—Co1—N391.53 (5)
O1W—Co1—N3177.67 (6)
O1—Co1—N390.39 (5)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C4—H4A⋯N10.972.523.119 (2)120
C4—H4B⋯O10.972.563.167 (2)121
C9—H9D⋯N20.962.563.181 (3)123
O1—H1⋯N5i0.80 (2)2.08 (3)2.824 (2)156 (2)
O1W—H1WA⋯N6ii0.76 (2)2.07 (2)2.821 (2)168 (3)
O2—H2⋯N4iii0.78 (2)1.97 (2)2.7417 (18)172 (2)
O1W—H1WB⋯S2iii0.88 (3)2.55 (3)3.4146 (16)168 (2)

Symmetry codes: (i) ; (ii) ; (iii) .

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