Literature DB >> 21201609

Diaqua-bis(8-chloro-1,3-dimethyl-2,6-dioxo-1,2,3,6-tetra-hydro-7H-purinato-κN)copper(II) dihydrate.

Ji-Hua Deng1, Zhi-Xing Xiong, Yan-Ping Yi, Lin Yuan, Hui-Rui Guo, Meng-Ping Guo, Lin Liu.   

Abstract

The title mononuclear copper(II) complex, [Cu(C(7)H(6)ClN(4)O(2))(2)(H(2)O)(2)]·2H(2)O, based on 8-chloro-theophylline (HCt), has the Cu atom at a center of symmetry in a slightly distorted trans square-planar geometry coordinated by two N atoms of two deprotonated HCt ligands and two O atoms of water mol-ecules. The crystal packing is stabilized by hydrogen bonds involving deprotonated HCt ligands, coordinated water mol-ecules and uncoordinated solvent water mol-ecules.

Entities:  

Year:  2008        PMID: 21201609      PMCID: PMC2960592          DOI: 10.1107/S160053680802549X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Halpert et al. (2002 ▶); Antholine et al. (1985 ▶); García-Tojal et al. (1996 ▶); Okabe et al. (1993 ▶); Saryan et al. (1979 ▶); Serafin (1996 ▶); Spealman (1988 ▶); West et al. (1993 ▶); Zhao et al. (2003 ▶).

Experimental

Crystal data

[Cu(C7H6ClN4O2)2(H2O)2]·2H2O M = 562.82 Triclinic, a = 8.377 (5) Å b = 8.533 (8) Å c = 8.830 (3) Å α = 67.999 (2)° β = 64.180 (7)° γ = 78.388 (6)° V = 526.2 (6) Å3 Z = 1 Mo Kα radiation μ = 1.35 mm−1 T = 293 (2) K 0.36 × 0.24 × 0.16 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.685, T max = 0.802 3811 measured reflections 1834 independent reflections 936 reflections with I > 2σ(I) R int = 0.099

Refinement

R[F 2 > 2σ(F 2)] = 0.058 wR(F 2) = 0.102 S = 0.99 1834 reflections 153 parameters 19 restraints H-atom parameters constrained Δρmax = 0.54 e Å−3 Δρmin = −0.66 e Å−3 Data collection: SMART (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053680802549X/bg2201sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680802549X/bg2201Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(C7H6Cl1N4O2)2(H2O1)2]·2H2OZ = 1
Mr = 562.82F000 = 287
Triclinic, P1Dx = 1.776 Mg m3
Hall symbol: -P 1Mo Kα radiation λ = 0.71073 Å
a = 8.377 (5) ÅCell parameters from 822 reflections
b = 8.533 (8) Åθ = 2.6–25.0º
c = 8.830 (3) ŵ = 1.35 mm1
α = 67.999 (2)ºT = 293 (2) K
β = 64.180 (7)ºBlock, green
γ = 78.388 (6)º0.36 × 0.24 × 0.16 mm
V = 526.2 (6) Å3
Bruker SMART CCD area-detector diffractometer1834 independent reflections
Radiation source: fine-focus sealed tube936 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.099
T = 293(2) Kθmax = 25.0º
φ and ω scansθmin = 2.6º
Absorption correction: multi-scan(SADABS; Sheldrick, 1996)h = −9→9
Tmin = 0.685, Tmax = 0.802k = −8→10
3811 measured reflectionsl = −10→10
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.058H-atom parameters constrained
wR(F2) = 0.102  w = 1/[σ2(Fo2)]
S = 0.99(Δ/σ)max = 0.004
1834 reflectionsΔρmax = 0.54 e Å3
153 parametersΔρmin = −0.66 e Å3
19 restraintsExtinction correction: none
Primary atom site location: structure-invariant direct methods
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cu10.50000.00001.00000.0214 (5)
N10.5200 (8)0.0829 (8)0.7503 (7)0.0214 (17)
N20.1993 (8)0.4308 (7)0.6697 (7)0.0203 (16)
N30.4180 (8)0.3889 (8)0.4053 (7)0.0264 (18)
N40.6338 (8)0.1570 (8)0.4472 (8)0.0245 (18)
O10.1930 (7)0.2659 (6)0.9464 (6)0.0296 (15)
O20.2040 (6)0.6046 (6)0.3965 (6)0.0210 (13)
O30.6720 (6)0.1598 (6)0.9341 (6)0.0340 (15)
H3A0.71540.20290.82560.051*
H3B0.73760.16510.98150.051*
O40.8607 (7)0.0978 (6)0.1220 (6)0.0330 (16)
H4A0.95780.14130.07040.049*
H4B0.78680.12260.20970.049*
Cl10.8042 (3)−0.1040 (3)0.6122 (3)0.0308 (6)
C10.4156 (10)0.2195 (9)0.6872 (9)0.0171 (19)
C20.2692 (10)0.2944 (9)0.7842 (10)0.019 (2)
C30.2719 (10)0.4812 (9)0.4827 (9)0.0142 (18)
C40.4889 (11)0.2531 (10)0.5113 (10)0.022 (2)
C50.6432 (10)0.0543 (9)0.6041 (10)0.019 (2)
C60.0408 (9)0.5307 (9)0.7496 (9)0.021 (2)
H6A0.07590.63600.73890.032*
H6B−0.02030.46860.87310.032*
H6C−0.03670.55270.68900.032*
C70.4918 (9)0.4281 (9)0.2102 (8)0.020 (2)
H7A0.39800.47040.16850.030*
H7B0.54650.32730.18090.030*
H7C0.57880.51220.15440.030*
U11U22U33U12U13U23
Cu10.0267 (10)0.0224 (10)0.0140 (9)−0.0032 (8)−0.0113 (8)0.0001 (7)
N10.019 (4)0.027 (4)0.017 (4)−0.011 (3)−0.010 (3)0.001 (3)
N20.027 (4)0.021 (4)0.009 (3)−0.004 (3)−0.004 (3)−0.003 (3)
N30.030 (5)0.036 (5)0.011 (4)−0.006 (4)−0.004 (3)−0.008 (3)
N40.022 (4)0.033 (4)0.012 (4)−0.006 (3)−0.002 (3)−0.003 (3)
O10.036 (4)0.033 (4)0.014 (3)−0.006 (3)−0.007 (3)−0.003 (3)
O20.0205 (16)0.0215 (16)0.0201 (15)0.0010 (9)−0.0110 (10)−0.0035 (10)
O30.052 (4)0.038 (4)0.013 (3)−0.031 (3)−0.015 (3)0.008 (3)
O40.027 (4)0.050 (4)0.018 (3)−0.005 (3)−0.010 (3)−0.004 (3)
Cl10.0279 (15)0.0291 (15)0.0273 (13)0.0002 (11)−0.0096 (11)−0.0031 (11)
C10.027 (5)0.014 (5)0.009 (4)0.002 (4)−0.010 (4)−0.002 (3)
C20.019 (2)0.019 (2)0.019 (2)−0.0004 (10)−0.0083 (12)−0.0056 (11)
C30.014 (2)0.014 (2)0.014 (2)0.0005 (10)−0.0066 (12)−0.0031 (11)
C40.022 (2)0.022 (2)0.022 (2)−0.0005 (10)−0.0092 (12)−0.0064 (12)
C50.011 (5)0.019 (5)0.028 (5)−0.002 (4)−0.002 (4)−0.014 (4)
C60.021 (2)0.021 (2)0.020 (2)0.0002 (10)−0.0092 (12)−0.0055 (11)
C70.020 (2)0.020 (2)0.019 (2)0.0004 (10)−0.0088 (12)−0.0048 (11)
Cu1—O3i1.934 (5)O2—C31.244 (7)
Cu1—O31.934 (5)O3—H3A0.8200
Cu1—N11.986 (6)O3—H3B0.8388
Cu1—N1i1.986 (6)O4—H4A0.8242
N1—C51.329 (8)O4—H4B0.8243
N1—C11.401 (8)Cl1—C51.711 (7)
N2—C31.407 (8)C1—C41.333 (9)
N2—C21.442 (8)C1—C21.351 (9)
N2—C61.472 (8)C6—H6A0.9600
N3—C31.369 (8)C6—H6B0.9600
N3—C41.402 (8)C6—H6C0.9600
N3—C71.479 (7)C7—H7A0.9600
N4—C51.361 (8)C7—H7B0.9600
N4—C41.347 (9)C7—H7C0.9600
O1—C21.234 (8)
O3i—Cu1—O3180.0 (3)O1—C2—N2118.4 (7)
O3i—Cu1—N190.5 (2)C1—C2—N2110.6 (7)
O3—Cu1—N189.5 (2)O2—C3—N3123.4 (6)
O3i—Cu1—N1i89.5 (2)O2—C3—N2120.1 (7)
O3—Cu1—N1i90.5 (2)N3—C3—N2116.5 (6)
N1—Cu1—N1i180.000 (1)C1—C4—N4116.5 (7)
C5—N1—C1104.1 (6)C1—C4—N3119.0 (7)
C5—N1—Cu1131.8 (5)N4—C4—N3124.4 (7)
C1—N1—Cu1122.9 (5)N1—C5—N4116.4 (7)
C3—N2—C2125.4 (6)N1—C5—Cl1122.0 (6)
C3—N2—C6115.4 (6)N4—C5—Cl1121.6 (6)
C2—N2—C6119.2 (6)N2—C6—H6A109.5
C3—N3—C4120.1 (6)N2—C6—H6B109.5
C3—N3—C7118.8 (6)H6A—C6—H6B109.5
C4—N3—C7121.0 (6)N2—C6—H6C109.5
C5—N4—C498.7 (6)H6A—C6—H6C109.5
Cu1—O3—H3A109.4H6B—C6—H6C109.5
Cu1—O3—H3B132.7N3—C7—H7A109.5
H3A—O3—H3B112.4N3—C7—H7B109.5
H4A—O4—H4B118.2H7A—C7—H7B109.5
C4—C1—C2128.2 (7)N3—C7—H7C109.5
C4—C1—N1104.3 (7)H7A—C7—H7C109.5
C2—C1—N1127.5 (7)H7B—C7—H7C109.5
O1—C2—C1131.0 (7)
D—H···AD—HH···AD···AD—H···A
O3—H3A···O2ii0.821.982.729 (7)154
O3—H3B···O4iii0.841.812.612 (8)159
O4—H4A···O1iv0.822.072.897 (9)176
O4—H4B···N40.822.032.839 (8)170
Cu1—O31.934 (5)
Cu1—N11.986 (6)
O3i—Cu1—O3180
O3—Cu1—N189.5 (2)
O3—Cu1—N1i90.5 (2)
N1—Cu1—N1i180

Symmetry code: (i) .

Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3A⋯O2ii0.821.982.729 (7)154
O3—H3B⋯O4iii0.841.812.612 (8)159
O4—H4A⋯O1iv0.822.072.897 (9)176
O4—H4B⋯N40.822.032.839 (8)170

Symmetry codes: (ii) ; (iii) ; (iv) .

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