Literature DB >> 21201557

Racemic 1,2,3,4,7,8,9,10-octa-fluoro-6H,12H-5,11-methano-dibenzo[b,f][1,5]diazo-cine: an octa-fluorinated analogue of Tröger's base.

Christophe M L Vande Velde, Delphine Didier, Frank Blockhuys, Sergey Sergeyev.   

Abstract

The title compound, C(15)H(6)F(8)N(2), possesses a non-crystal-lographic twofold axis. The dihedral angle between the two benzene rings is 98.4 (2)°. The crystal structure involves intermolecular C-H⋯F hydrogen bonds.

Entities:  

Year:  2008        PMID: 21201557      PMCID: PMC2960364          DOI: 10.1107/S1600536808002602

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For recent reviews on the chemistry of Tröger’s base (Tröger, 1887 ▶; Spielman, 1935 ▶), see: Valík et al. (2005 ▶) and Dolensky et al. (2007 ▶). For related literature on the chirality of Tröger’s base, see: Prelog & Wieland (1944 ▶); for mol­ecular clefts, see: Wilcox et al. (1987 ▶) and Artacho et al. (2006 ▶) and references cited therein; for (poly)halo-substituted Tröger’s base analogues, see: Jensen & Wärnmark (2001 ▶), Sergeyev & Diederich (2004 ▶), Hansson et al. (2003 ▶), Li et al. (2005 ▶) and Faroughi et al. (2006 ▶). For related literature, see: Zabrodsky et al. (1993 ▶).

Experimental

Crystal data

C15H6F8N2 M = 366.22 Monoclinic, a = 8.075 (3) Å b = 10.469 (2) Å c = 17.628 (6) Å β = 117.15 (2)° V = 1326.0 (8) Å3 Z = 4 Mo Kα radiation μ = 0.19 mm−1 T = 290 (1) K 0.3 × 0.2 × 0.2 mm

Data collection

Enraf–Nonius MACH3 diffractometer Absorption correction: none 5028 measured reflections 2412 independent reflections 1353 reflections with I > 2σ(I) R int = 0.078 3 standard reflections every 73 reflections intensity decay: 4%

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.128 S = 1.03 2412 reflections 251 parameters All H-atom parameters refined Δρmax = 0.20 e Å−3 Δρmin = −0.25 e Å−3 Data collection: CAD-4 EXPRESS (Enraf–Nonius, 1994 ▶); cell refinement: CAD-4 EXPRESS; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON (Spek, 2003 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808002602/pk2080sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808002602/pk2080Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H6F8N2Dx = 1.834 Mg m3
Mr = 366.22Melting point: 192(1) K
Monoclinic, P21/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 25 reflections
a = 8.075 (3) Åθ = 5–12º
b = 10.469 (2) ŵ = 0.19 mm1
c = 17.628 (6) ÅT = 290 (1) K
β = 117.15 (2)ºCell measurement pressure: 101(1) kPa
V = 1326.0 (8) Å3Rhomb, colourless
Z = 40.3 × 0.2 × 0.2 mm
F000 = 728
Enraf–Nonius MACH3 diffractometerRint = 0.078
Radiation source: sealed tubeθmax = 25.3º
Monochromator: pyrolytic graphiteθmin = 2.3º
T = 290(1) Kh = 0→9
P = 101(1) kPak = −12→12
profiled ω/2θ scansl = −21→18
Absorption correction: none3 standard reflections
5028 measured reflections every 73 reflections
2412 independent reflections intensity decay: 4%
1353 reflections with I > 2σ(I)
Refinement on F2Hydrogen site location: difference Fourier map
Least-squares matrix: fullAll H-atom parameters refined
R[F2 > 2σ(F2)] = 0.044  w = 1/[σ2(Fo2) + (0.06P)2] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.128(Δ/σ)max < 0.001
S = 1.03Δρmax = 0.20 e Å3
2412 reflectionsΔρmin = −0.25 e Å3
251 parametersExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.008 (2)
Secondary atom site location: difference Fourier map
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
H131−0.193 (4)0.216 (3)0.8025 (17)0.051 (8)*
H1210.305 (4)0.121 (3)0.810 (2)0.069 (9)*
H1220.136 (5)0.176 (3)0.726 (2)0.077 (10)*
H62−0.105 (5)0.310 (3)0.9326 (17)0.057 (9)*
H132−0.111 (4)0.269 (3)0.741 (2)0.060 (9)*
H610.092 (4)0.374 (3)0.9788 (19)0.053 (9)*
F70.1474 (3)0.21118 (18)1.10195 (11)0.0715 (6)
F100.2539 (3)−0.08189 (16)0.87533 (11)0.0699 (6)
F10.5029 (3)0.29145 (19)0.78363 (12)0.0679 (6)
F90.3839 (3)−0.15905 (16)1.03755 (11)0.0729 (6)
N110.0509 (3)0.1395 (2)0.81513 (13)0.0506 (6)
F80.3308 (3)−0.01382 (19)1.15148 (10)0.0730 (6)
C12A0.2581 (4)0.3151 (3)0.81963 (16)0.0467 (7)
F40.1600 (3)0.58222 (17)0.92368 (14)0.0845 (7)
F30.4753 (3)0.66558 (18)0.92211 (15)0.0919 (7)
C10A0.1288 (4)0.1067 (3)0.90262 (15)0.0417 (6)
C90.2933 (4)−0.0464 (3)1.01318 (17)0.0489 (7)
F20.6451 (3)0.5220 (2)0.85025 (14)0.0852 (6)
C70.1727 (4)0.1397 (3)1.04471 (16)0.0471 (7)
N5−0.0035 (3)0.3514 (2)0.85287 (15)0.0570 (7)
C4A0.1674 (4)0.3903 (3)0.85490 (17)0.0488 (7)
C10.4148 (4)0.3626 (3)0.81791 (18)0.0510 (8)
C80.2668 (4)0.0260 (3)1.07054 (16)0.0491 (7)
C100.2252 (4)−0.0074 (3)0.93048 (16)0.0450 (7)
C6A0.1055 (4)0.1831 (3)0.96176 (17)0.0460 (7)
C13−0.0834 (5)0.2423 (4)0.7960 (2)0.0611 (9)
C20.4898 (4)0.4799 (3)0.8519 (2)0.0583 (8)
C40.2450 (5)0.5081 (3)0.88958 (18)0.0584 (8)
C30.4040 (5)0.5512 (3)0.8886 (2)0.0616 (9)
C60.0168 (5)0.3137 (3)0.9374 (2)0.0577 (9)
C120.1908 (5)0.1805 (3)0.78815 (19)0.0530 (8)
U11U22U33U12U13U23
F70.1095 (15)0.0648 (11)0.0538 (10)0.0031 (11)0.0490 (11)−0.0071 (9)
F100.1081 (15)0.0474 (10)0.0537 (10)0.0049 (10)0.0364 (10)−0.0103 (8)
F10.0709 (12)0.0683 (12)0.0764 (12)0.0122 (10)0.0440 (10)0.0101 (10)
F90.0981 (15)0.0433 (10)0.0660 (12)0.0137 (10)0.0276 (10)0.0114 (9)
N110.0534 (14)0.0571 (16)0.0335 (12)0.0002 (13)0.0130 (10)0.0035 (11)
F80.1033 (15)0.0666 (12)0.0379 (9)0.0000 (11)0.0224 (9)0.0098 (9)
C12A0.0484 (17)0.0506 (16)0.0352 (14)0.0092 (14)0.0139 (12)0.0113 (13)
F40.1074 (17)0.0539 (11)0.1061 (16)0.0224 (11)0.0607 (14)−0.0004 (11)
F30.1082 (17)0.0477 (11)0.1105 (17)−0.0089 (12)0.0419 (14)−0.0055 (12)
C10A0.0435 (15)0.0430 (14)0.0348 (14)−0.0044 (13)0.0144 (12)0.0002 (12)
C90.0557 (17)0.0351 (15)0.0481 (16)0.0008 (14)0.0170 (14)0.0039 (13)
F20.0694 (13)0.0731 (13)0.1142 (16)−0.0077 (11)0.0429 (12)0.0129 (12)
C70.0589 (18)0.0477 (17)0.0397 (15)−0.0058 (15)0.0268 (13)−0.0068 (13)
N50.0536 (15)0.0572 (15)0.0577 (15)0.0156 (14)0.0233 (12)0.0161 (13)
C4A0.0512 (17)0.0468 (17)0.0455 (16)0.0137 (15)0.0195 (14)0.0172 (14)
C10.0523 (17)0.0547 (19)0.0478 (16)0.0145 (16)0.0244 (14)0.0120 (14)
C80.0609 (18)0.0467 (16)0.0316 (14)−0.0078 (15)0.0140 (13)0.0058 (13)
C100.0570 (17)0.0389 (15)0.0376 (14)−0.0047 (14)0.0201 (13)−0.0074 (13)
C6A0.0489 (17)0.0457 (16)0.0443 (15)0.0000 (13)0.0220 (13)0.0014 (13)
C130.0468 (19)0.078 (2)0.0480 (19)0.0021 (17)0.0123 (15)0.0164 (18)
C20.0519 (19)0.0541 (18)0.067 (2)0.0070 (16)0.0250 (16)0.0183 (16)
C40.072 (2)0.0476 (18)0.0587 (19)0.0222 (17)0.0330 (17)0.0108 (16)
C30.067 (2)0.0402 (17)0.067 (2)0.0048 (16)0.0217 (17)0.0091 (15)
C60.058 (2)0.058 (2)0.064 (2)0.0141 (17)0.0335 (18)0.0116 (17)
C120.063 (2)0.0587 (19)0.0358 (15)0.0005 (16)0.0215 (15)0.0011 (14)
F7—C71.345 (3)F2—C21.342 (3)
F10—C101.347 (3)C7—C81.373 (4)
F1—C11.348 (3)C7—C6A1.384 (4)
F9—C91.350 (3)N5—C4A1.423 (4)
N11—C10A1.417 (3)N5—C131.461 (4)
N11—C131.454 (4)N5—C61.476 (4)
N11—C121.476 (4)C4A—C41.393 (5)
F8—C81.343 (3)C1—C21.380 (5)
C12A—C11.372 (4)C6A—C61.513 (4)
C12A—C4A1.400 (4)C13—H1310.98 (3)
C12A—C121.520 (4)C13—H1320.93 (3)
F4—C41.346 (3)C2—C31.365 (5)
F3—C31.343 (4)C4—C31.368 (5)
C10A—C101.387 (4)C6—H620.95 (3)
C10A—C6A1.393 (4)C6—H610.95 (3)
C9—C81.357 (4)C12—H1211.03 (3)
C9—C101.365 (4)C12—H1220.98 (3)
C10A—N11—C13110.2 (2)C7—C6A—C10A118.7 (3)
C10A—N11—C12113.3 (2)C7—C6A—C6120.2 (3)
C13—N11—C12108.1 (3)C10A—C6A—C6121.0 (3)
C1—C12A—C4A118.7 (3)N11—C13—N5111.7 (2)
C1—C12A—C12120.5 (3)N11—C13—H131112.5 (18)
C4A—C12A—C12120.7 (3)N5—C13—H131106.2 (17)
C10—C10A—C6A118.3 (2)N11—C13—H132105.1 (19)
C10—C10A—N11119.5 (2)N5—C13—H132107 (2)
C6A—C10A—N11122.1 (3)H131—C13—H132114 (3)
F9—C9—C8119.9 (3)F2—C2—C3120.8 (3)
F9—C9—C10119.8 (3)F2—C2—C1120.8 (3)
C8—C9—C10120.3 (3)C3—C2—C1118.4 (3)
F7—C7—C8119.0 (2)F4—C4—C3119.3 (3)
F7—C7—C6A119.3 (3)F4—C4—C4A119.2 (3)
C8—C7—C6A121.7 (3)C3—C4—C4A121.6 (3)
C4A—N5—C13111.1 (3)F3—C3—C2119.2 (3)
C4A—N5—C6113.0 (2)F3—C3—C4120.3 (3)
C13—N5—C6107.1 (3)C2—C3—C4120.5 (3)
C4—C4A—C12A118.1 (3)N5—C6—C6A110.4 (3)
C4—C4A—N5120.1 (3)N5—C6—H62106.7 (17)
C12A—C4A—N5121.8 (3)C6A—C6—H62109 (2)
F1—C1—C12A119.3 (3)N5—C6—H61109.5 (17)
F1—C1—C2118.0 (3)C6A—C6—H61109.4 (18)
C12A—C1—C2122.7 (3)H62—C6—H61112 (2)
F8—C8—C9120.2 (3)N11—C12—C12A110.5 (3)
F8—C8—C7120.5 (3)N11—C12—H121113.2 (18)
C9—C8—C7119.3 (2)C12A—C12—H121107.9 (19)
F10—C10—C9118.6 (3)N11—C12—H122109 (2)
F10—C10—C10A119.8 (2)C12A—C12—H122111 (2)
C9—C10—C10A121.6 (3)H121—C12—H122105 (3)
C13—N11—C10A—C10164.7 (3)F7—C7—C6A—C64.4 (4)
C12—N11—C10A—C10−74.1 (3)C8—C7—C6A—C6−174.9 (3)
C13—N11—C10A—C6A−12.6 (4)C10—C10A—C6A—C7−2.5 (4)
C12—N11—C10A—C6A108.7 (3)N11—C10A—C6A—C7174.8 (2)
C1—C12A—C4A—C4−2.4 (4)C10—C10A—C6A—C6174.6 (3)
C12—C12A—C4A—C4174.4 (3)N11—C10A—C6A—C6−8.1 (4)
C1—C12A—C4A—N5175.1 (2)C10A—N11—C13—N553.2 (3)
C12—C12A—C4A—N5−8.2 (4)C12—N11—C13—N5−71.2 (3)
C13—N5—C4A—C4165.8 (3)C4A—N5—C13—N1151.4 (3)
C6—N5—C4A—C4−73.8 (3)C6—N5—C13—N11−72.5 (3)
C13—N5—C4A—C12A−11.6 (3)F1—C1—C2—F20.4 (4)
C6—N5—C4A—C12A108.8 (3)C12A—C1—C2—F2178.8 (3)
C4A—C12A—C1—F1−179.6 (2)F1—C1—C2—C3−178.4 (3)
C12—C12A—C1—F13.7 (4)C12A—C1—C2—C30.0 (4)
C4A—C12A—C1—C22.0 (4)C12A—C4A—C4—F4179.9 (2)
C12—C12A—C1—C2−174.7 (3)N5—C4A—C4—F42.4 (4)
F9—C9—C8—F80.1 (4)C12A—C4A—C4—C30.9 (4)
C10—C9—C8—F8178.7 (3)N5—C4A—C4—C3−176.6 (3)
F9—C9—C8—C7−179.3 (3)F2—C2—C3—F31.1 (5)
C10—C9—C8—C7−0.8 (4)C1—C2—C3—F3179.9 (3)
F7—C7—C8—F80.7 (4)F2—C2—C3—C4179.6 (3)
C6A—C7—C8—F8179.9 (3)C1—C2—C3—C4−1.6 (5)
F7—C7—C8—C9−179.8 (3)F4—C4—C3—F30.7 (4)
C6A—C7—C8—C9−0.6 (4)C4A—C4—C3—F3179.7 (3)
F9—C9—C10—F10−1.3 (4)F4—C4—C3—C2−177.8 (3)
C8—C9—C10—F10−179.9 (3)C4A—C4—C3—C21.2 (5)
F9—C9—C10—C10A179.0 (3)C4A—N5—C6—C6A−75.7 (4)
C8—C9—C10—C10A0.5 (4)C13—N5—C6—C6A47.0 (3)
C6A—C10A—C10—F10−178.4 (2)C7—C6A—C6—N5166.7 (3)
N11—C10A—C10—F104.2 (4)C10A—C6A—C6—N5−10.4 (4)
C6A—C10A—C10—C91.2 (4)C10A—N11—C12—C12A−75.3 (3)
N11—C10A—C10—C9−176.2 (3)C13—N11—C12—C12A47.2 (3)
F7—C7—C6A—C10A−178.5 (3)C1—C12A—C12—N11166.2 (2)
C8—C7—C6A—C10A2.3 (4)C4A—C12A—C12—N11−10.5 (4)
C—H···FC—HH···FC···FC—H···F
C13—H132···F10i0.93 (3)2.41 (3)3.257 (4)151 (3)
C13—H131···F1ii0.98 (4)2.46 (3)3.287 (5)143 (2)
C12—H122···F7iii0.98 (3)2.52 (3)3.336 (4)141 (3)
Table 1

C—H ⋯ F contacts (Å, °)

C—H⋯FC—HH⋯FC⋯FC—H⋯F
C13—H132⋯F10i0.93 (3)2.41 (3)3.257 (4)151 (3)
C13—H131⋯F1ii0.98 (4)2.46 (3)3.287 (5)143 (2)
C12—H122⋯F7iii0.98 (3)2.52 (3)3.336 (4)141 (3)

Symmetry codes: (i) , (ii) , (iii) .

  3 in total

1.  Regio- and stereoselective tether-directed remote functionalization of C60 with derivatives of the Tröger base.

Authors:  Sergey Sergeyev; François Diederich
Journal:  Angew Chem Int Ed Engl       Date:  2004-03-19       Impact factor: 15.336

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  The synthesis and characterization of all diastereomers of a linear symmetrically fused Tris-Tröger's base analogue: new chiral cleft compounds.

Authors:  Josep Artacho; Patrik Nilsson; Karl-Erik Bergquist; Ola F Wendt; Kenneth Wärnmark
Journal:  Chemistry       Date:  2006-03-20       Impact factor: 5.236

  3 in total
  2 in total

1.  Diethyl 6H,12H-5,11-methano-dibenzo[b,f][1,5]diazo-cine-1,7-dicarboxyl-ate.

Authors:  M Delower H Bhuiyan; Jack K Clegg; Andrew C Try
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-12-20

2.  2,8-Dibromo-4,10-dichloro-6H,12H-5,11-methano-dibenzo[b,f][1,5]diazo-cine.

Authors:  Kai-Xian Zhu; Donald C Craig; Andrew C Try
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-08-20
  2 in total

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