Literature DB >> 21201539

3-[(E)-2,4-Dichloro-benzyl-idene]-1-methyl-piperidin-4-one.

D Gayathri, D Velmurugan, R Ranjith Kumar, S Perumal, K Ravikumar.   

Abstract

The piperidine ring of the title compound, C(13)H(13)Cl(2)NO, adopts an envelope conformation. Inter-molecular C-H⋯O inter-actions link the mol-ecules into a C(7) chain running along the b axis.

Entities:  

Year:  2008        PMID: 21201539      PMCID: PMC2960166          DOI: 10.1107/S1600536808002286

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For biological activities of 4-piperidones, see: Badorrey et al. (1999 ▶); Grishina et al. (1994 ▶); Nalanishi et al. (1974a ▶,b ▶). For ring conformations, see: Cremer & Pople (1975 ▶); Nardelli (1983 ▶).

Experimental

Crystal data

C13H13Cl2NO M = 270.14 Monoclinic, a = 12.2013 (9) Å b = 8.5901 (6) Å c = 12.6391 (9) Å β = 92.997 (1)° V = 1322.90 (16) Å3 Z = 4 Mo Kα radiation μ = 0.47 mm−1 T = 293 (2) K 0.24 × 0.23 × 0.20 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: none 14377 measured reflections 3071 independent reflections 2654 reflections with I > 2σ(I) R int = 0.018

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.120 S = 0.97 3071 reflections 155 parameters H-atom parameters constrained Δρmax = 0.34 e Å−3 Δρmin = −0.28 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2003 ▶); software used to prepare material for publication: SHELXL97 and PARST (Nardelli, 1995 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808002286/ci2557sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808002286/ci2557Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H13Cl2NOF000 = 560
Mr = 270.14Dx = 1.356 Mg m3
Monoclinic, P21/nMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 1509 reflections
a = 12.2013 (9) Åθ = 2.3–25.0º
b = 8.5901 (6) ŵ = 0.47 mm1
c = 12.6391 (9) ÅT = 293 (2) K
β = 92.997 (1)ºBlock, pale yellow
V = 1322.90 (16) Å30.24 × 0.23 × 0.20 mm
Z = 4
Bruker SMART APEX CCD area-detector diffractometer2654 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.019
Monochromator: graphiteθmax = 28.1º
T = 293(2) Kθmin = 2.3º
ω scansh = −15→15
Absorption correction: nonek = −10→11
14377 measured reflectionsl = −16→16
3071 independent reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.040H-atom parameters constrained
wR(F2) = 0.120  w = 1/[σ2(Fo2) + (0.0724P)2 + 0.3356P] where P = (Fo2 + 2Fc2)/3
S = 0.97(Δ/σ)max = 0.001
3071 reflectionsΔρmax = 0.34 e Å3
155 parametersΔρmin = −0.27 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.53390 (18)0.5088 (2)1.24853 (18)0.0781 (5)
H1A0.55180.50791.17550.117*
H1B0.59660.54211.29170.117*
H1C0.47400.57921.25760.117*
C20.47091 (17)0.3512 (2)1.38999 (14)0.0700 (5)
H2A0.40380.41041.39590.084*
H2B0.52800.40041.43460.084*
C30.4536 (2)0.1860 (3)1.42729 (13)0.0791 (6)
H3A0.52480.13741.44030.095*
H3B0.41820.18961.49420.095*
C40.38604 (15)0.0855 (2)1.35183 (13)0.0660 (5)
C50.37681 (12)0.1336 (2)1.23733 (11)0.0524 (3)
C60.41053 (13)0.29745 (19)1.21048 (12)0.0532 (3)
H6A0.43170.30081.13760.064*
H6B0.34840.36671.21680.064*
C70.34326 (12)0.0240 (2)1.16663 (12)0.0545 (4)
H70.3257−0.07281.19390.065*
C80.33134 (11)0.04126 (18)1.05058 (11)0.0486 (3)
C90.35991 (12)−0.08015 (17)0.98306 (12)0.0489 (3)
C100.35760 (12)−0.06504 (17)0.87383 (12)0.0496 (3)
H100.3791−0.14650.83110.059*
C110.32225 (13)0.07535 (18)0.83036 (11)0.0500 (3)
C120.28628 (14)0.19534 (19)0.89226 (13)0.0565 (4)
H120.25920.28670.86130.068*
C130.29116 (13)0.17732 (19)1.00152 (13)0.0557 (4)
H130.26700.25811.04340.067*
N10.50222 (11)0.35202 (16)1.28025 (10)0.0539 (3)
O10.34393 (15)−0.0325 (2)1.38258 (12)0.1014 (6)
Cl10.40318 (5)−0.25836 (5)1.03652 (4)0.07721 (18)
Cl20.32208 (5)0.09909 (5)0.69335 (3)0.07158 (17)
U11U22U33U12U13U23
C10.0843 (13)0.0546 (10)0.0934 (14)−0.0057 (9)−0.0158 (11)0.0027 (10)
C20.0752 (11)0.0799 (12)0.0544 (9)0.0079 (9)−0.0035 (8)−0.0182 (9)
C30.0949 (14)0.1009 (15)0.0412 (8)−0.0155 (12)0.0012 (8)0.0010 (9)
C40.0617 (9)0.0896 (13)0.0472 (8)−0.0133 (9)0.0065 (7)0.0089 (8)
C50.0465 (7)0.0672 (9)0.0437 (7)−0.0049 (6)0.0037 (6)0.0033 (6)
C60.0523 (8)0.0595 (9)0.0475 (7)0.0023 (7)−0.0001 (6)−0.0007 (7)
C70.0509 (8)0.0625 (9)0.0501 (8)−0.0084 (7)0.0038 (6)0.0046 (7)
C80.0424 (7)0.0541 (8)0.0493 (7)−0.0043 (6)0.0011 (5)−0.0007 (6)
C90.0473 (7)0.0448 (7)0.0543 (8)−0.0020 (6)−0.0011 (6)0.0045 (6)
C100.0512 (7)0.0460 (7)0.0513 (8)−0.0012 (6)0.0016 (6)−0.0035 (6)
C110.0535 (8)0.0504 (7)0.0455 (7)−0.0036 (6)−0.0018 (6)0.0003 (6)
C120.0639 (9)0.0483 (8)0.0563 (8)0.0069 (7)−0.0084 (7)−0.0006 (7)
C130.0561 (8)0.0555 (8)0.0549 (8)0.0071 (7)−0.0032 (6)−0.0090 (7)
N10.0546 (7)0.0524 (7)0.0540 (7)0.0017 (5)−0.0029 (5)−0.0036 (5)
O10.1116 (12)0.1262 (13)0.0654 (8)−0.0543 (11)−0.0048 (8)0.0325 (9)
Cl10.1059 (4)0.0545 (3)0.0708 (3)0.0144 (2)0.0005 (3)0.01340 (19)
Cl20.1041 (4)0.0622 (3)0.0482 (2)−0.0037 (2)0.0024 (2)0.00406 (17)
C1—N11.463 (2)C6—H6A0.97
C1—H1A0.96C6—H6B0.97
C1—H1B0.96C7—C81.474 (2)
C1—H1C0.96C7—H70.93
C2—N11.458 (2)C8—C131.400 (2)
C2—C31.514 (3)C8—C91.403 (2)
C2—H2A0.97C9—C101.385 (2)
C2—H2B0.97C9—Cl11.7440 (15)
C3—C41.501 (3)C10—C111.385 (2)
C3—H3A0.97C10—H100.93
C3—H3B0.97C11—C121.380 (2)
C4—O11.209 (2)C11—Cl21.7435 (15)
C4—C51.504 (2)C12—C131.388 (2)
C5—C71.346 (2)C12—H120.93
C5—C61.510 (2)C13—H130.93
C6—N11.465 (2)
N1—C1—H1A109.5N1—C6—H6B109.3
N1—C1—H1B109.5C5—C6—H6B109.3
H1A—C1—H1B109.5H6A—C6—H6B107.9
N1—C1—H1C109.5C5—C7—C8126.95 (15)
H1A—C1—H1C109.5C5—C7—H7116.5
H1B—C1—H1C109.5C8—C7—H7116.5
N1—C2—C3110.39 (15)C13—C8—C9116.34 (13)
N1—C2—H2A109.6C13—C8—C7122.59 (14)
C3—C2—H2A109.6C9—C8—C7121.07 (14)
N1—C2—H2B109.6C10—C9—C8122.94 (13)
C3—C2—H2B109.6C10—C9—Cl1117.27 (11)
H2A—C2—H2B108.1C8—C9—Cl1119.78 (12)
C4—C3—C2114.99 (16)C11—C10—C9117.82 (13)
C4—C3—H3A108.5C11—C10—H10121.1
C2—C3—H3A108.5C9—C10—H10121.1
C4—C3—H3B108.5C12—C11—C10121.83 (14)
C2—C3—H3B108.5C12—C11—Cl2119.47 (12)
H3A—C3—H3B107.5C10—C11—Cl2118.69 (12)
O1—C4—C5121.85 (17)C11—C12—C13118.85 (15)
O1—C4—C3120.41 (16)C11—C12—H12120.6
C5—C4—C3117.69 (16)C13—C12—H12120.6
C7—C5—C4116.86 (16)C12—C13—C8121.99 (14)
C7—C5—C6125.39 (14)C12—C13—H13119.0
C4—C5—C6117.70 (14)C8—C13—H13119.0
N1—C6—C5111.81 (13)C1—N1—C2110.56 (15)
N1—C6—H6A109.3C1—N1—C6109.51 (14)
C5—C6—H6A109.3C2—N1—C6109.96 (13)
N1—C2—C3—C4−46.3 (2)C13—C8—C9—Cl1−176.27 (11)
C2—C3—C4—O1−161.3 (2)C7—C8—C9—Cl13.54 (19)
C2—C3—C4—C521.1 (3)C8—C9—C10—C11−2.0 (2)
O1—C4—C5—C7−15.5 (3)Cl1—C9—C10—C11179.32 (11)
C3—C4—C5—C7162.09 (18)C9—C10—C11—C12−2.4 (2)
O1—C4—C5—C6167.14 (19)C9—C10—C11—Cl2178.30 (11)
C3—C4—C5—C6−15.2 (2)C10—C11—C12—C133.4 (2)
C7—C5—C6—N1−142.95 (16)Cl2—C11—C12—C13−177.33 (13)
C4—C5—C6—N134.12 (19)C11—C12—C13—C80.0 (2)
C4—C5—C7—C8−177.87 (14)C9—C8—C13—C12−4.0 (2)
C6—C5—C7—C8−0.8 (3)C7—C8—C13—C12176.22 (14)
C5—C7—C8—C13−38.6 (2)C3—C2—N1—C1−172.10 (17)
C5—C7—C8—C9141.58 (17)C3—C2—N1—C666.9 (2)
C13—C8—C9—C105.0 (2)C5—C6—N1—C1178.07 (14)
C7—C8—C9—C10−175.16 (13)C5—C6—N1—C2−60.26 (17)
D—H···AD—HH···AD···AD—H···A
C13—H13···O1i0.932.463.366 (2)163
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C13—H13⋯O1i0.932.463.366 (2)163

Symmetry code: (i) .

  1 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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1.  r-2,c-6-Bis(3-methoxy-phen-yl)-t-3,t-5-dimethyl-piperidin-4-one.

Authors:  P Parthiban; V Ramkumar; Nanjundan Ashok Kumar; Jong Su Kim; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-07-31
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