Literature DB >> 21201538

9-(2,3-Dichloro-phen-yl)-4a-hydr-oxy-3,3,6,6-tetra-methyl-4,4a,5,6,9,9a-hexa-hydro-3H-xanthene-1,8(2H,7H)-dione.

Ghodsi Mohammadi Ziarani, Alireza Abbasi, Alireza Badiei, Mahboubeh Haddadpour, Ali Abdi Jahangir.   

Abstract

Mol-ecules of the title compound, C(23)H(26)Cl(2)O(4), are linked by hydrogen bonds between the hydroxyl O atom and the carbonyl O atom of a neighboring mol-ecule. The central hydropyran and fused cyclohexanone rings adopt half-chair conformations, while the fused hydroxycyclohexanone ring adopts a chair conformation.

Entities:  

Year:  2008        PMID: 21201538      PMCID: PMC2960184          DOI: 10.1107/S1600536808002183

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of xanthenes, see: Kantevari et al. (2006 ▶); Lin et al. (2007 ▶). For therapeutic effects, see: Sirkecioglu et al. (1995 ▶).

Experimental

Crystal data

C23H26Cl2O4 M = 437.34 Monoclinic, a = 11.9581 (17) Å b = 15.165 (2) Å c = 12.3953 (18) Å β = 105.357 (13)° V = 2167.5 (5) Å3 Z = 4 Mo Kα radiation μ = 0.33 mm−1 T = 290 (2) K 0.22 × 0.10 × 0.09 mm

Data collection

Stoe IPDS diffractometer Absorption correction: numerical (X-RED; Stoe & Cie, 1997 ▶) T min = 0.930, T max = 0.969 13922 measured reflections 4012 independent reflections 1511 reflections with I > 2σ(I) R int = 0.070

Refinement

R[F 2 > 2σ(F 2)] = 0.060 wR(F 2) = 0.162 S = 0.85 4012 reflections 246 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.73 e Å−3 Δρmin = −0.83 e Å−3 Data collection: IPDS Software (Stoe & Cie, 1997 ▶); cell refinement: IPDS Software; data reduction: IPDS Software; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 2001 ▶); software used to prepare material for publication: PLATON (Spek, 2003 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808002183/ng2413sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808002183/ng2413Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C23H26Cl2O4F000 = 920
Mr = 437.34Dx = 1.340 Mg m3
Monoclinic, P21/aMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2yabCell parameters from 13922 reflections
a = 11.9581 (17) Åθ = 3.3–25.5º
b = 15.165 (2) ŵ = 0.33 mm1
c = 12.3953 (18) ÅT = 290 (2) K
β = 105.357 (13)ºBlock shape, colorless
V = 2167.5 (5) Å30.22 × 0.10 × 0.09 mm
Z = 4
Stoe IPDS diffractometer4012 independent reflections
Radiation source: fine-focus sealed tube1511 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.070
T = 290(2) Kθmax = 25.5º
φ oscillation scansθmin = 3.7º
Absorption correction: numerical(X-RED; Stoe & Cie, 1997)h = −14→12
Tmin = 0.930, Tmax = 0.969k = −17→18
13922 measured reflectionsl = −15→15
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.060  w = 1/[σ2(Fo2) + (0.08P)2] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.162(Δ/σ)max < 0.001
S = 0.85Δρmax = 0.73 e Å3
4012 reflectionsΔρmin = −0.83 e Å3
246 parametersExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0056 (13)
Secondary atom site location: difference Fourier map
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.74989 (9)0.77065 (8)−0.11681 (10)0.0535 (4)
Cl20.80090 (12)0.65780 (9)−0.30989 (10)0.0694 (5)
O11.1085 (2)0.84256 (18)0.2731 (2)0.0445 (8)
O21.1313 (2)0.8477 (2)0.0944 (3)0.0469 (9)
H221.197 (4)0.851 (3)0.130 (4)0.056*
O30.8621 (3)0.59442 (19)0.2062 (3)0.0532 (9)
O40.7952 (3)0.8634 (2)0.2112 (3)0.0571 (9)
C10.9390 (3)0.8517 (3)0.1106 (3)0.0315 (10)
H10.91880.86990.03190.038*
C20.9459 (3)0.7008 (3)0.0160 (4)0.0337 (11)
C30.9198 (3)0.7533 (3)0.1118 (3)0.0365 (11)
H30.83710.74490.10560.044*
C40.8591 (4)0.9029 (3)0.1672 (4)0.0398 (11)
C51.0648 (3)0.8800 (3)0.1620 (4)0.0347 (11)
C61.0712 (4)0.7622 (3)0.2944 (4)0.0415 (11)
C71.0802 (3)0.9788 (3)0.1793 (3)0.0367 (11)
H7A1.07511.00570.10710.044*
H7B1.15800.98940.22590.044*
C80.8930 (4)0.6534 (3)−0.1764 (4)0.0487 (13)
C90.8717 (4)0.7044 (3)−0.0908 (4)0.0370 (11)
C100.8714 (4)0.9994 (3)0.1684 (4)0.0447 (12)
H10A0.81571.02560.20340.054*
H10B0.85491.02110.09220.054*
C111.0414 (4)0.6451 (3)0.0339 (4)0.0473 (12)
H111.09320.64230.10450.057*
C120.9942 (4)1.0271 (3)0.2326 (4)0.0397 (11)
C130.9474 (4)0.6348 (3)0.2614 (4)0.0507 (13)
C140.9840 (4)0.7182 (3)0.2255 (4)0.0408 (11)
C151.0604 (4)0.5943 (3)−0.0507 (5)0.0589 (14)
H151.12340.5560−0.03620.071*
C161.1378 (5)0.7305 (4)0.4066 (5)0.0905 (10)
H16A1.21290.70970.40120.109*
H16B1.15130.78010.45780.109*
C171.0136 (4)1.0051 (3)0.3568 (4)0.0621 (15)
H17A0.96251.04010.38740.093*
H17B1.09261.01760.39610.093*
H17C0.99780.94370.36480.093*
C180.9873 (5)0.5992 (3)−0.1572 (5)0.0559 (14)
H181.00210.5661−0.21510.067*
C191.0103 (4)1.1263 (3)0.2207 (4)0.0597 (14)
H19A0.99181.14160.14280.090*
H19B1.08931.14190.25590.090*
H19C0.95981.15760.25590.090*
C201.0817 (5)0.6589 (4)0.4551 (5)0.0905 (10)
C211.0208 (5)0.5970 (4)0.3675 (4)0.0905 (10)
H21A0.97190.55960.39930.109*
H21B1.07850.55930.34890.109*
C221.1532 (5)0.6224 (4)0.5598 (5)0.0905 (10)
H22A1.21210.58510.54430.136*
H22B1.10550.58840.59550.136*
H22C1.18910.66960.60830.136*
C230.9799 (5)0.7069 (4)0.4916 (5)0.0905 (10)
H23A0.93060.66360.51200.136*
H23B0.93540.74160.43030.136*
H23C1.01190.74460.55440.136*
U11U22U33U12U13U23
Cl10.0437 (7)0.0653 (9)0.0458 (8)0.0066 (6)0.0019 (6)−0.0049 (6)
Cl20.0873 (10)0.0793 (10)0.0415 (8)−0.0153 (8)0.0171 (7)−0.0107 (7)
O10.0449 (18)0.0365 (19)0.045 (2)−0.0107 (15)−0.0013 (15)0.0099 (15)
O20.0329 (18)0.050 (2)0.058 (2)0.0001 (17)0.0121 (16)−0.0025 (17)
O30.049 (2)0.0415 (19)0.063 (2)−0.0143 (16)0.0030 (17)0.0017 (16)
O40.044 (2)0.063 (2)0.070 (2)−0.0123 (17)0.0261 (18)−0.0110 (18)
C10.030 (2)0.030 (3)0.031 (2)−0.002 (2)0.0023 (19)0.001 (2)
C20.030 (2)0.031 (3)0.041 (3)−0.006 (2)0.010 (2)−0.005 (2)
C30.026 (2)0.040 (3)0.043 (3)−0.006 (2)0.006 (2)−0.001 (2)
C40.032 (3)0.045 (3)0.039 (3)−0.003 (2)0.003 (2)−0.006 (2)
C50.030 (3)0.042 (3)0.033 (3)−0.001 (2)0.012 (2)0.001 (2)
C60.035 (3)0.040 (3)0.044 (3)−0.004 (2)0.001 (2)0.008 (2)
C70.036 (3)0.035 (3)0.037 (3)−0.003 (2)0.007 (2)0.006 (2)
C80.055 (3)0.050 (3)0.042 (3)−0.020 (3)0.016 (3)−0.005 (3)
C90.039 (3)0.030 (3)0.043 (3)−0.006 (2)0.012 (2)−0.004 (2)
C100.040 (3)0.047 (3)0.048 (3)0.007 (2)0.014 (2)−0.010 (2)
C110.038 (3)0.045 (3)0.061 (3)−0.001 (2)0.015 (2)−0.005 (3)
C120.044 (3)0.035 (3)0.041 (3)−0.003 (2)0.014 (2)−0.005 (2)
C130.051 (3)0.038 (3)0.056 (3)−0.011 (3)0.002 (3)0.007 (2)
C140.037 (3)0.041 (3)0.039 (3)−0.008 (2)0.002 (2)0.003 (2)
C150.052 (3)0.043 (3)0.088 (5)0.008 (2)0.029 (3)−0.001 (3)
C160.098 (2)0.086 (2)0.0683 (19)−0.0274 (16)−0.0119 (15)0.0250 (15)
C170.068 (3)0.074 (4)0.046 (3)−0.017 (3)0.019 (3)−0.012 (3)
C180.067 (4)0.047 (3)0.061 (4)−0.002 (3)0.029 (3)−0.013 (3)
C190.071 (4)0.045 (3)0.067 (4)−0.002 (3)0.026 (3)−0.012 (3)
C200.098 (2)0.086 (2)0.0683 (19)−0.0274 (16)−0.0119 (15)0.0250 (15)
C210.098 (2)0.086 (2)0.0683 (19)−0.0274 (16)−0.0119 (15)0.0250 (15)
C220.098 (2)0.086 (2)0.0683 (19)−0.0274 (16)−0.0119 (15)0.0250 (15)
C230.098 (2)0.086 (2)0.0683 (19)−0.0274 (16)−0.0119 (15)0.0250 (15)
Cl1—C91.728 (4)C11—C151.368 (6)
Cl2—C81.729 (5)C11—H110.9300
O1—C61.347 (5)C12—C191.529 (6)
O1—C51.453 (5)C12—C171.532 (6)
O2—C51.388 (5)C13—C141.447 (6)
O2—H220.79 (4)C13—C211.489 (6)
O3—C131.230 (5)C15—C181.379 (6)
O4—C41.209 (5)C15—H150.9300
C1—C31.510 (5)C16—C201.485 (7)
C1—C51.532 (5)C16—H16A0.9700
C1—C41.538 (6)C16—H16B0.9700
C1—H10.9800C17—H17A0.9600
C2—C91.386 (6)C17—H17B0.9600
C2—C111.390 (5)C17—H17C0.9600
C2—C31.529 (6)C18—H180.9300
C3—C141.511 (5)C19—H19A0.9600
C3—H30.9800C19—H19B0.9600
C4—C101.470 (6)C19—H19C0.9600
C5—C71.517 (5)C20—C221.460 (7)
C6—C141.338 (5)C20—C211.473 (7)
C6—C161.488 (6)C20—C231.584 (8)
C7—C121.546 (5)C21—H21A0.9700
C7—H7A0.9700C21—H21B0.9700
C7—H7B0.9700C22—H22A0.9600
C8—C181.364 (6)C22—H22B0.9600
C8—C91.390 (6)C22—H22C0.9600
C10—C121.532 (5)C23—H23A0.9600
C10—H10A0.9700C23—H23B0.9600
C10—H10B0.9700C23—H23C0.9600
C6—O1—C5119.0 (3)C17—C12—C7112.7 (3)
C5—O2—H22106 (3)O3—C13—C14122.5 (4)
C3—C1—C5114.1 (3)O3—C13—C21120.5 (4)
C3—C1—C4112.4 (3)C14—C13—C21116.9 (4)
C5—C1—C4109.2 (3)C6—C14—C13119.2 (4)
C3—C1—H1106.9C6—C14—C3122.5 (4)
C5—C1—H1106.9C13—C14—C3118.3 (4)
C4—C1—H1106.9C11—C15—C18120.8 (5)
C9—C2—C11117.9 (4)C11—C15—H15119.6
C9—C2—C3120.7 (4)C18—C15—H15119.6
C11—C2—C3121.3 (4)C20—C16—C6115.4 (4)
C1—C3—C14108.4 (3)C20—C16—H16A108.4
C1—C3—C2116.3 (3)C6—C16—H16A108.4
C14—C3—C2112.5 (3)C20—C16—H16B108.4
C1—C3—H3106.3C6—C16—H16B108.4
C14—C3—H3106.3H16A—C16—H16B107.5
C2—C3—H3106.3C12—C17—H17A109.5
O4—C4—C10124.2 (4)C12—C17—H17B109.5
O4—C4—C1119.9 (4)H17A—C17—H17B109.5
C10—C4—C1115.8 (4)C12—C17—H17C109.5
O2—C5—O1108.3 (3)H17A—C17—H17C109.5
O2—C5—C7111.5 (3)H17B—C17—H17C109.5
O1—C5—C7104.6 (3)C8—C18—C15119.0 (4)
O2—C5—C1107.8 (3)C8—C18—H18120.5
O1—C5—C1110.6 (3)C15—C18—H18120.5
C7—C5—C1113.9 (3)C12—C19—H19A109.5
C14—C6—O1124.7 (4)C12—C19—H19B109.5
C14—C6—C16124.7 (4)H19A—C19—H19B109.5
O1—C6—C16110.6 (4)C12—C19—H19C109.5
C5—C7—C12117.2 (3)H19A—C19—H19C109.5
C5—C7—H7A108.0H19B—C19—H19C109.5
C12—C7—H7A108.0C22—C20—C21118.2 (5)
C5—C7—H7B108.0C22—C20—C16114.6 (5)
C12—C7—H7B108.0C21—C20—C16110.8 (5)
H7A—C7—H7B107.2C22—C20—C23103.5 (5)
C18—C8—C9120.8 (4)C21—C20—C23103.6 (5)
C18—C8—Cl2118.5 (4)C16—C20—C23104.1 (5)
C9—C8—Cl2120.6 (4)C20—C21—C13117.8 (5)
C2—C9—C8120.4 (4)C20—C21—H21A107.9
C2—C9—Cl1119.7 (3)C13—C21—H21A107.9
C8—C9—Cl1119.8 (4)C20—C21—H21B107.9
C4—C10—C12111.0 (4)C13—C21—H21B107.9
C4—C10—H10A109.4H21A—C21—H21B107.2
C12—C10—H10A109.4C20—C22—H22A109.5
C4—C10—H10B109.4C20—C22—H22B109.5
C12—C10—H10B109.4H22A—C22—H22B109.5
H10A—C10—H10B108.0C20—C22—H22C109.5
C15—C11—C2121.0 (4)H22A—C22—H22C109.5
C15—C11—H11119.5H22B—C22—H22C109.5
C2—C11—H11119.5C20—C23—H23A109.5
C19—C12—C10110.3 (4)C20—C23—H23B109.5
C19—C12—C17108.8 (4)H23A—C23—H23B109.5
C10—C12—C17109.4 (4)C20—C23—H23C109.5
C19—C12—C7108.0 (3)H23A—C23—H23C109.5
C10—C12—C7107.7 (3)H23B—C23—H23C109.5
C5—C1—C3—C1444.4 (5)C1—C4—C10—C12−61.1 (5)
C4—C1—C3—C14−80.6 (4)C9—C2—C11—C15−1.1 (6)
C5—C1—C3—C2−83.6 (4)C3—C2—C11—C15176.0 (4)
C4—C1—C3—C2151.5 (3)C4—C10—C12—C19172.9 (4)
C9—C2—C3—C1−73.9 (5)C4—C10—C12—C17−67.5 (5)
C11—C2—C3—C1109.1 (4)C4—C10—C12—C755.2 (5)
C9—C2—C3—C14160.2 (4)C5—C7—C12—C19−169.0 (4)
C11—C2—C3—C14−16.8 (5)C5—C7—C12—C10−49.8 (5)
C3—C1—C4—O43.8 (5)C5—C7—C12—C1770.8 (5)
C5—C1—C4—O4−123.8 (4)O1—C6—C14—C13−175.9 (4)
C3—C1—C4—C10−179.4 (3)C16—C6—C14—C131.9 (7)
C5—C1—C4—C1053.0 (5)O1—C6—C14—C32.6 (7)
C6—O1—C5—O2−84.3 (4)C16—C6—C14—C3−179.6 (5)
C6—O1—C5—C7156.7 (3)O3—C13—C14—C6174.1 (4)
C6—O1—C5—C133.6 (5)C21—C13—C14—C6−8.4 (7)
C3—C1—C5—O265.9 (4)O3—C13—C14—C3−4.6 (7)
C4—C1—C5—O2−167.5 (3)C21—C13—C14—C3173.0 (5)
C3—C1—C5—O1−52.3 (5)C1—C3—C14—C6−20.3 (6)
C4—C1—C5—O174.3 (4)C2—C3—C14—C6109.8 (5)
C3—C1—C5—C7−169.8 (3)C1—C3—C14—C13158.3 (4)
C4—C1—C5—C7−43.2 (5)C2—C3—C14—C13−71.6 (5)
C5—O1—C6—C14−9.9 (6)C2—C11—C15—C182.2 (7)
C5—O1—C6—C16172.1 (4)C14—C6—C16—C20−17.4 (9)
O2—C5—C7—C12168.1 (3)O1—C6—C16—C20160.6 (5)
O1—C5—C7—C12−75.0 (4)C9—C8—C18—C151.4 (7)
C1—C5—C7—C1245.9 (5)Cl2—C8—C18—C15−179.2 (4)
C11—C2—C9—C80.2 (6)C11—C15—C18—C8−2.3 (7)
C3—C2—C9—C8−176.9 (4)C6—C16—C20—C22174.0 (6)
C11—C2—C9—Cl1178.5 (3)C6—C16—C20—C2137.2 (8)
C3—C2—C9—Cl11.4 (5)C6—C16—C20—C23−73.6 (6)
C18—C8—C9—C2−0.3 (7)C22—C20—C21—C13179.6 (5)
Cl2—C8—C9—C2−179.8 (3)C16—C20—C21—C13−45.3 (8)
C18—C8—C9—Cl1−178.6 (3)C23—C20—C21—C1365.8 (6)
Cl2—C8—C9—Cl11.9 (5)O3—C13—C21—C20−150.8 (5)
O4—C4—C10—C12115.6 (5)C14—C13—C21—C2031.5 (8)
D—H···AD—HH···AD···AD—H···A
O2—H22···O3i0.79 (4)2.12 (4)2.879 (4)160 (5)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H22⋯O3i0.79 (4)2.12 (4)2.879 (4)160 (5)

Symmetry code: (i) .

  1 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  1 in total
  1 in total

1.  Crystal structure of 10a-hy-droxy-9-(3-nitro-phen-yl)-3,6-diphenyl-3,4,5,6,7,8a,9,10a-octa-hydro-1H-xanthene-1,8(2H)-dione.

Authors:  Xin-Yuan Zhang; Bing-Xiang Hu; Ze-Yu Zhou; Lei Zhou; Fang-Ming Wang
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-11-21
  1 in total

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