Literature DB >> 21201511

1'-Phenyl-6'-thia-cyclo-heptane-1-spiro-2'-perhydro-pyrrolizine-3'-spiro-3''-indoline-2,2''-dione.

S Sundaramoorthy, D Gayathri, D Velmurugan, M Poornachandran, K Ravikumar.   

Abstract

The thia-zolidine ring and the pyrrolidine ring in the title compound, C(25)H(26)N(2)O(2)S, both adopt an envelope conformation. The seven-membered ring has a twist-chair conformation. The crystal packing is stabilized by inter-molecular N-H⋯O hydrogen bonds.

Entities:  

Year:  2008        PMID: 21201511      PMCID: PMC2960420          DOI: 10.1107/S1600536807068705

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Amal Raj et al. (2003 ▶); Cremer & Pople (1975 ▶); Kumar et al. (2006 ▶); Nardelli (1983 ▶); Si et al. (2005 ▶).

Experimental

Crystal data

C25H26N2O2S M = 418.54 Triclinic, a = 8.9846 (10) Å b = 10.3564 (11) Å c = 12.8124 (14) Å α = 80.147 (2)° β = 71.012 (2)° γ = 67.497 (2)° V = 1040.0 (2) Å3 Z = 2 Mo Kα radiation μ = 0.18 mm−1 T = 293 (2) K 0.26 × 0.25 × 0.23 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: none 11582 measured reflections 4697 independent reflections 3880 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.062 wR(F 2) = 0.157 S = 1.08 4697 reflections 271 parameters H-atom parameters constrained Δρmax = 0.36 e Å−3 Δρmin = −0.20 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2003 ▶); software used to prepare material for publication: SHELXL97 and PARST (Nardelli, 1995 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536807068705/bt2666sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536807068705/bt2666Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C25H26N2O2SZ = 2
Mr = 418.54F000 = 444
Triclinic, P1Dx = 1.337 Mg m3
Hall symbol: -P 1Mo Kα radiation λ = 0.71073 Å
a = 8.9846 (10) ÅCell parameters from 2358 reflections
b = 10.3564 (11) Åθ = 1.7–25.0º
c = 12.8124 (14) ŵ = 0.18 mm1
α = 80.147 (2)ºT = 293 (2) K
β = 71.012 (2)ºBlock, colorless
γ = 67.497 (2)º0.26 × 0.25 × 0.23 mm
V = 1040.0 (2) Å3
Bruker SMART CCD area-detector diffractometer3880 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.023
Monochromator: graphiteθmax = 28.0º
T = 293(2) Kθmin = 1.7º
ω scansh = −11→11
Absorption correction: nonek = −13→13
11582 measured reflectionsl = −16→16
4697 independent reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.062H-atom parameters constrained
wR(F2) = 0.157  w = 1/[σ2(Fo2) + (0.0833P)2 + 0.2981P] where P = (Fo2 + 2Fc2)/3
S = 1.08(Δ/σ)max < 0.001
4697 reflectionsΔρmax = 0.36 e Å3
271 parametersΔρmin = −0.20 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.2327 (2)0.71980 (19)0.35784 (14)0.0267 (4)
C20.1643 (2)0.84561 (18)0.27522 (14)0.0245 (4)
C30.2629 (2)0.93969 (19)0.27834 (14)0.0275 (4)
H30.38070.89160.23860.033*
C40.2543 (2)0.9308 (2)0.39991 (15)0.0309 (4)
H40.15031.00220.43860.037*
C50.4043 (3)0.9465 (3)0.4219 (2)0.0486 (6)
H5A0.36750.99610.48870.058*
H5B0.45680.99890.36070.058*
C60.3716 (3)0.7143 (3)0.4993 (2)0.0477 (6)
H6A0.40630.61460.49180.057*
H6B0.32560.73250.57730.057*
C70.1116 (2)0.63856 (19)0.41978 (14)0.0283 (4)
C80.3423 (3)0.4830 (2)0.31052 (16)0.0340 (4)
C90.4440 (3)0.3632 (2)0.25409 (19)0.0474 (6)
H90.41180.28550.26480.057*
C100.5958 (3)0.3639 (3)0.1810 (2)0.0552 (7)
H100.66650.28570.14040.066*
C110.6440 (3)0.4783 (3)0.1674 (2)0.0521 (6)
H110.74820.47500.11930.063*
C120.5404 (3)0.5984 (2)0.22390 (18)0.0410 (5)
H120.57410.67520.21410.049*
C130.3852 (2)0.6016 (2)0.29553 (15)0.0311 (4)
C140.2143 (3)0.79473 (19)0.15917 (15)0.0312 (4)
C150.1212 (3)0.7116 (2)0.13959 (18)0.0435 (5)
H15A0.06940.67110.20930.052*
H15B0.19900.63600.09200.052*
C16−0.0142 (4)0.8082 (3)0.0852 (2)0.0584 (7)
H16A0.03700.85840.02160.070*
H16B−0.05760.75140.05880.070*
C17−0.1593 (3)0.9132 (3)0.1619 (2)0.0600 (7)
H17A−0.22340.86310.21720.072*
H17B−0.23260.97630.11930.072*
C18−0.1110 (3)1.0007 (2)0.22123 (19)0.0433 (5)
H18A−0.21131.07770.25380.052*
H18B−0.03391.04060.16690.052*
C19−0.0288 (2)0.9197 (2)0.31231 (15)0.0307 (4)
H19A−0.07930.84970.34740.037*
H19B−0.05610.98440.36790.037*
C200.2132 (2)1.0876 (2)0.22729 (15)0.0300 (4)
C210.3124 (3)1.1172 (2)0.12397 (17)0.0393 (5)
H210.40701.04590.08760.047*
C220.2726 (3)1.2504 (3)0.07487 (19)0.0503 (6)
H220.34061.26810.00600.060*
C230.1336 (4)1.3570 (2)0.1268 (2)0.0512 (6)
H230.10511.44610.09240.061*
C240.0365 (3)1.3313 (2)0.2302 (2)0.0477 (6)
H24−0.05651.40390.26650.057*
C250.0765 (3)1.1980 (2)0.28063 (18)0.0385 (5)
H250.01101.18220.35110.046*
N10.2471 (2)0.79135 (17)0.44146 (12)0.0312 (4)
N20.1822 (2)0.50686 (17)0.38528 (14)0.0365 (4)
H20.13470.44510.40660.044*
O1−0.02147 (18)0.68469 (15)0.49036 (11)0.0377 (3)
O20.3167 (2)0.82744 (17)0.08308 (11)0.0449 (4)
S10.55069 (8)0.77332 (8)0.43717 (6)0.0609 (2)
U11U22U33U12U13U23
C10.0286 (9)0.0307 (9)0.0235 (8)−0.0144 (8)−0.0074 (7)0.0014 (7)
C20.0295 (9)0.0258 (9)0.0194 (8)−0.0125 (7)−0.0066 (7)0.0012 (7)
C30.0301 (9)0.0301 (9)0.0234 (9)−0.0143 (8)−0.0045 (7)−0.0014 (7)
C40.0358 (10)0.0354 (10)0.0264 (9)−0.0176 (8)−0.0091 (8)−0.0014 (8)
C50.0577 (15)0.0605 (15)0.0485 (13)−0.0368 (12)−0.0255 (11)0.0027 (11)
C60.0591 (15)0.0524 (14)0.0437 (12)−0.0251 (12)−0.0296 (11)0.0099 (10)
C70.0345 (10)0.0316 (10)0.0220 (8)−0.0166 (8)−0.0096 (7)0.0051 (7)
C80.0395 (11)0.0309 (10)0.0289 (9)−0.0104 (9)−0.0115 (8)0.0039 (8)
C90.0591 (15)0.0308 (11)0.0446 (12)−0.0088 (10)−0.0154 (11)0.0015 (9)
C100.0559 (15)0.0376 (12)0.0446 (13)0.0071 (11)−0.0077 (11)−0.0015 (10)
C110.0362 (12)0.0530 (15)0.0435 (13)−0.0005 (11)−0.0028 (10)0.0044 (11)
C120.0337 (11)0.0433 (12)0.0383 (11)−0.0108 (9)−0.0075 (9)0.0052 (9)
C130.0316 (10)0.0327 (10)0.0259 (9)−0.0092 (8)−0.0100 (8)0.0043 (7)
C140.0404 (11)0.0272 (9)0.0255 (9)−0.0110 (8)−0.0103 (8)0.0001 (7)
C150.0661 (15)0.0409 (12)0.0357 (11)−0.0268 (11)−0.0212 (10)−0.0010 (9)
C160.0824 (19)0.0688 (17)0.0485 (14)−0.0382 (15)−0.0401 (14)0.0050 (12)
C170.0601 (16)0.0745 (18)0.0625 (16)−0.0296 (14)−0.0409 (14)0.0135 (14)
C180.0408 (12)0.0444 (12)0.0435 (12)−0.0107 (10)−0.0202 (10)0.0068 (10)
C190.0298 (10)0.0352 (10)0.0259 (9)−0.0123 (8)−0.0075 (8)0.0028 (8)
C200.0372 (10)0.0313 (10)0.0273 (9)−0.0189 (8)−0.0090 (8)0.0001 (7)
C210.0471 (12)0.0397 (11)0.0316 (10)−0.0215 (10)−0.0057 (9)0.0000 (9)
C220.0710 (17)0.0501 (14)0.0367 (12)−0.0360 (13)−0.0131 (11)0.0110 (10)
C230.0764 (17)0.0352 (12)0.0554 (14)−0.0290 (12)−0.0331 (13)0.0147 (10)
C240.0562 (14)0.0318 (11)0.0581 (14)−0.0125 (10)−0.0222 (12)−0.0057 (10)
C250.0442 (12)0.0363 (11)0.0350 (10)−0.0169 (9)−0.0070 (9)−0.0037 (9)
N10.0371 (9)0.0375 (9)0.0259 (8)−0.0184 (7)−0.0141 (7)0.0032 (7)
N20.0430 (10)0.0299 (8)0.0372 (9)−0.0191 (7)−0.0074 (8)0.0041 (7)
O10.0382 (8)0.0393 (8)0.0332 (7)−0.0206 (6)−0.0002 (6)0.0013 (6)
O20.0558 (10)0.0530 (9)0.0247 (7)−0.0257 (8)0.0002 (7)−0.0059 (6)
S10.0454 (4)0.0753 (5)0.0743 (5)−0.0243 (3)−0.0318 (3)0.0007 (4)
C1—N11.466 (2)C12—C131.389 (3)
C1—C131.534 (3)C12—H120.9300
C1—C71.560 (2)C14—O21.206 (2)
C1—C21.592 (2)C14—C151.505 (3)
C2—C141.531 (2)C15—C161.532 (3)
C2—C191.547 (3)C15—H15A0.9700
C2—C31.560 (2)C15—H15B0.9700
C3—C201.516 (3)C16—C171.514 (4)
C3—C41.523 (2)C16—H16A0.9700
C3—H30.9800C16—H16B0.9700
C4—N11.469 (2)C17—C181.530 (3)
C4—C51.535 (3)C17—H17A0.9700
C4—H40.9800C17—H17B0.9700
C5—S11.796 (3)C18—C191.537 (3)
C5—H5A0.9700C18—H18A0.9700
C5—H5B0.9700C18—H18B0.9700
C6—N11.445 (3)C19—H19A0.9700
C6—S11.830 (2)C19—H19B0.9700
C6—H6A0.9700C20—C251.389 (3)
C6—H6B0.9700C20—C211.394 (3)
C7—O11.217 (2)C21—C221.378 (3)
C7—N21.349 (2)C21—H210.9300
C8—C91.381 (3)C22—C231.370 (4)
C8—C131.388 (3)C22—H220.9300
C8—N21.400 (3)C23—C241.375 (4)
C9—C101.382 (3)C23—H230.9300
C9—H90.9300C24—C251.385 (3)
C10—C111.377 (4)C24—H240.9300
C10—H100.9300C25—H250.9300
C11—C121.386 (3)N2—H20.8600
C11—H110.9300
N1—C1—C13120.41 (15)O2—C14—C2121.75 (17)
N1—C1—C7106.89 (14)C15—C14—C2118.00 (17)
C13—C1—C7100.64 (14)C14—C15—C16109.25 (18)
N1—C1—C2102.68 (14)C14—C15—H15A109.8
C13—C1—C2111.37 (14)C16—C15—H15A109.8
C7—C1—C2115.44 (14)C14—C15—H15B109.8
C14—C2—C19108.15 (15)C16—C15—H15B109.8
C14—C2—C3111.12 (14)H15A—C15—H15B108.3
C19—C2—C3113.41 (15)C17—C16—C15113.6 (2)
C14—C2—C1110.81 (14)C17—C16—H16A108.8
C19—C2—C1113.62 (14)C15—C16—H16A108.8
C3—C2—C199.60 (13)C17—C16—H16B108.8
C20—C3—C4114.20 (15)C15—C16—H16B108.8
C20—C3—C2118.60 (15)H16A—C16—H16B107.7
C4—C3—C2103.40 (14)C16—C17—C18115.7 (2)
C20—C3—H3106.6C16—C17—H17A108.4
C4—C3—H3106.6C18—C17—H17A108.4
C2—C3—H3106.6C16—C17—H17B108.4
N1—C4—C3104.86 (14)C18—C17—H17B108.4
N1—C4—C5109.38 (17)H17A—C17—H17B107.4
C3—C4—C5114.85 (16)C17—C18—C19114.69 (19)
N1—C4—H4109.2C17—C18—H18A108.6
C3—C4—H4109.2C19—C18—H18A108.6
C5—C4—H4109.2C17—C18—H18B108.6
C4—C5—S1107.24 (15)C19—C18—H18B108.6
C4—C5—H5A110.3H18A—C18—H18B107.6
S1—C5—H5A110.3C18—C19—C2116.35 (16)
C4—C5—H5B110.3C18—C19—H19A108.2
S1—C5—H5B110.3C2—C19—H19A108.2
H5A—C5—H5B108.5C18—C19—H19B108.2
N1—C6—S1107.08 (15)C2—C19—H19B108.2
N1—C6—H6A110.3H19A—C19—H19B107.4
S1—C6—H6A110.3C25—C20—C21117.67 (18)
N1—C6—H6B110.3C25—C20—C3123.12 (17)
S1—C6—H6B110.3C21—C20—C3119.15 (18)
H6A—C6—H6B108.6C22—C21—C20121.1 (2)
O1—C7—N2125.70 (17)C22—C21—H21119.5
O1—C7—C1125.71 (17)C20—C21—H21119.5
N2—C7—C1108.54 (16)C23—C22—C21120.4 (2)
C9—C8—C13123.1 (2)C23—C22—H22119.8
C9—C8—N2126.65 (19)C21—C22—H22119.8
C13—C8—N2110.23 (17)C22—C23—C24119.5 (2)
C8—C9—C10117.0 (2)C22—C23—H23120.2
C8—C9—H9121.5C24—C23—H23120.2
C10—C9—H9121.5C23—C24—C25120.4 (2)
C11—C10—C9121.1 (2)C23—C24—H24119.8
C11—C10—H10119.5C25—C24—H24119.8
C9—C10—H10119.5C24—C25—C20120.8 (2)
C10—C11—C12121.4 (2)C24—C25—H25119.6
C10—C11—H11119.3C20—C25—H25119.6
C12—C11—H11119.3C6—N1—C1117.96 (17)
C11—C12—C13118.6 (2)C6—N1—C4112.11 (16)
C11—C12—H12120.7C1—N1—C4111.66 (14)
C13—C12—H12120.7C7—N2—C8111.73 (16)
C8—C13—C12118.80 (19)C7—N2—H2124.1
C8—C13—C1108.37 (16)C8—N2—H2124.1
C12—C13—C1132.51 (18)C5—S1—C688.36 (11)
O2—C14—C15120.06 (18)
N1—C1—C2—C14154.06 (15)C3—C2—C14—O2−0.4 (3)
C13—C1—C2—C1423.9 (2)C1—C2—C14—O2−110.2 (2)
C7—C1—C2—C14−90.04 (18)C19—C2—C14—C15−50.3 (2)
N1—C1—C2—C19−83.94 (17)C3—C2—C14—C15−175.42 (17)
C13—C1—C2—C19145.89 (16)C1—C2—C14—C1574.8 (2)
C7—C1—C2—C1932.0 (2)O2—C14—C15—C16−75.9 (3)
N1—C1—C2—C336.98 (16)C2—C14—C15—C1699.2 (2)
C13—C1—C2—C3−93.19 (16)C14—C15—C16—C17−70.3 (3)
C7—C1—C2—C3152.88 (15)C15—C16—C17—C1852.0 (3)
C14—C2—C3—C2074.5 (2)C16—C17—C18—C19−71.4 (3)
C19—C2—C3—C20−47.6 (2)C17—C18—C19—C287.6 (2)
C1—C2—C3—C20−168.64 (15)C14—C2—C19—C18−34.2 (2)
C14—C2—C3—C4−157.92 (15)C3—C2—C19—C1889.6 (2)
C19—C2—C3—C480.01 (17)C1—C2—C19—C18−157.62 (16)
C1—C2—C3—C4−41.06 (17)C4—C3—C20—C25−42.5 (3)
C20—C3—C4—N1160.57 (15)C2—C3—C20—C2579.8 (2)
C2—C3—C4—N130.29 (18)C4—C3—C20—C21134.67 (19)
C20—C3—C4—C5−79.4 (2)C2—C3—C20—C21−103.0 (2)
C2—C3—C4—C5150.37 (17)C25—C20—C21—C22−2.2 (3)
N1—C4—C5—S122.4 (2)C3—C20—C21—C22−179.53 (19)
C3—C4—C5—S1−95.20 (18)C20—C21—C22—C23−0.2 (4)
N1—C1—C7—O145.1 (2)C21—C22—C23—C242.1 (4)
C13—C1—C7—O1171.63 (18)C22—C23—C24—C25−1.5 (4)
C2—C1—C7—O1−68.4 (2)C23—C24—C25—C20−1.0 (3)
N1—C1—C7—N2−132.43 (16)C21—C20—C25—C242.8 (3)
C13—C1—C7—N2−5.90 (18)C3—C20—C25—C24−179.97 (19)
C2—C1—C7—N2114.09 (17)S1—C6—N1—C1101.84 (17)
C13—C8—C9—C100.9 (3)S1—C6—N1—C4−30.0 (2)
N2—C8—C9—C10177.8 (2)C13—C1—N1—C6−27.7 (2)
C8—C9—C10—C111.4 (4)C7—C1—N1—C686.0 (2)
C9—C10—C11—C12−1.9 (4)C2—C1—N1—C6−152.11 (16)
C10—C11—C12—C130.1 (4)C13—C1—N1—C4104.30 (18)
C9—C8—C13—C12−2.7 (3)C7—C1—N1—C4−142.00 (16)
N2—C8—C13—C12179.99 (17)C2—C1—N1—C4−20.10 (19)
C9—C8—C13—C1171.59 (19)C3—C4—N1—C6128.85 (18)
N2—C8—C13—C1−5.7 (2)C5—C4—N1—C65.2 (2)
C11—C12—C13—C82.1 (3)C3—C4—N1—C1−6.0 (2)
C11—C12—C13—C1−170.5 (2)C5—C4—N1—C1−129.71 (17)
N1—C1—C13—C8123.82 (18)O1—C7—N2—C8−174.57 (18)
C7—C1—C13—C86.88 (19)C1—C7—N2—C83.0 (2)
C2—C1—C13—C8−116.00 (16)C9—C8—N2—C7−175.5 (2)
N1—C1—C13—C12−63.0 (3)C13—C8—N2—C71.8 (2)
C7—C1—C13—C12−179.9 (2)C4—C5—S1—C6−33.23 (16)
C2—C1—C13—C1257.2 (3)N1—C6—S1—C536.70 (17)
C19—C2—C14—O2124.6 (2)
D—H···AD—HH···AD···AD—H···A
N2—H2···O1i0.862.042.859 (2)160
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2⋯O1i0.862.042.859 (2)160

Symmetry code: (i) .

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