| Literature DB >> 21201475 |
Lijun Zhang1, Jiarong Li, Daxin Shi, Ling Zhang, Yanqiu Fan.
Abstract
In the racemic title compound, C(14)H(11)N(3)O(3), the pyrimidine ring has an envelope conformation with the puckering parameters Q = 0.3338 (17) Å, Θ = 60.1 (3) and ϕ = 290.4 (3)°. The two N-H groups form hydrogen bonds with symmetry-related mol-ecules, building a two-dimensional network parallel to the (10) plane.Entities:
Year: 2008 PMID: 21201475 PMCID: PMC2960258 DOI: 10.1107/S1600536807066251
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C14H11N3O3 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 4115 reflections |
| θ = 1.8–27.9º | |
| µ = 0.11 mm−1 | |
| β = 109.697 (7)º | Block, yellow |
| 0.16 × 0.12 × 0.10 mm | |
| Rigaku Saturn diffractometer | 2358 independent reflections |
| Radiation source: rotating anode | 2209 reflections with |
| Monochromator: confocal | |
| Detector resolution: 14.63 pixels mm-1 | θmax = 26.0º |
| θmin = 2.2º | |
| ω scans | |
| Absorption correction: multi-scan(CrystalClear; Rigaku, 2004) | |
| 12847 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| | |
| (Δ/σ)max = 0.001 | |
| 2358 reflections | Δρmax = 0.30 e Å−3 |
| 187 parameters | Δρmin = −0.27 e Å−3 |
| 2 restraints | Extinction correction: none |
| Primary atom site location: structure-invariant direct methods |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.38313 (11) | 0.37578 (12) | 0.01748 (10) | 0.0300 (3) | |
| O2 | 0.88573 (16) | 0.82212 (18) | 0.63964 (16) | 0.0661 (6) | |
| O3 | 1.00163 (13) | 0.66568 (15) | 0.59857 (12) | 0.0405 (4) | |
| N1 | 0.59073 (14) | 0.40329 (15) | 0.13946 (12) | 0.0251 (3) | |
| H1 | 0.5980 (18) | 0.4683 (15) | 0.0939 (15) | 0.030* | |
| N2 | 0.69081 (13) | 0.25348 (14) | 0.30194 (13) | 0.0241 (3) | |
| H2 | 0.7543 (14) | 0.2352 (19) | 0.3656 (12) | 0.029* | |
| N3 | 0.89721 (16) | 0.71853 (17) | 0.58678 (14) | 0.0369 (4) | |
| C1 | 0.47429 (16) | 0.34319 (17) | 0.11042 (15) | 0.0248 (4) | |
| C2 | 0.46290 (16) | 0.23302 (17) | 0.19167 (14) | 0.0237 (4) | |
| C3 | 0.57453 (16) | 0.19070 (17) | 0.28587 (14) | 0.0226 (4) | |
| C4 | 0.56527 (17) | 0.07855 (17) | 0.35660 (15) | 0.0265 (4) | |
| H4 | 0.6379 | 0.0482 | 0.4185 | 0.032* | |
| C5 | 0.44777 (17) | 0.01378 (18) | 0.33363 (16) | 0.0287 (4) | |
| H5 | 0.4425 | −0.0606 | 0.3803 | 0.034* | |
| C6 | 0.33707 (18) | 0.05748 (18) | 0.24215 (16) | 0.0299 (4) | |
| H6 | 0.2584 | 0.0138 | 0.2288 | 0.036* | |
| C7 | 0.34564 (17) | 0.16652 (18) | 0.17147 (16) | 0.0272 (4) | |
| H7 | 0.2723 | 0.1958 | 0.1098 | 0.033* | |
| C8 | 0.69237 (16) | 0.39113 (17) | 0.25765 (14) | 0.0235 (4) | |
| H8 | 0.7758 | 0.4049 | 0.2459 | 0.028* | |
| C9 | 0.67990 (15) | 0.49851 (16) | 0.34659 (14) | 0.0227 (4) | |
| C10 | 0.79123 (16) | 0.55921 (17) | 0.42414 (15) | 0.0248 (4) | |
| H10 | 0.8723 | 0.5349 | 0.4220 | 0.030* | |
| C11 | 0.77919 (17) | 0.65619 (17) | 0.50431 (15) | 0.0269 (4) | |
| C12 | 0.66122 (18) | 0.69635 (18) | 0.51111 (16) | 0.0306 (4) | |
| H12 | 0.6560 | 0.7633 | 0.5649 | 0.037* | |
| C13 | 0.55171 (18) | 0.63387 (19) | 0.43545 (17) | 0.0326 (4) | |
| H13 | 0.4711 | 0.6573 | 0.4391 | 0.039* | |
| C14 | 0.56071 (17) | 0.53628 (18) | 0.35387 (16) | 0.0282 (4) | |
| H14 | 0.4858 | 0.4954 | 0.3031 | 0.034* |
| O1 | 0.0275 (7) | 0.0325 (7) | 0.0214 (6) | −0.0004 (5) | −0.0029 (5) | 0.0017 (5) |
| O2 | 0.0589 (11) | 0.0685 (12) | 0.0687 (12) | −0.0165 (9) | 0.0185 (9) | −0.0473 (10) |
| O3 | 0.0295 (8) | 0.0512 (9) | 0.0354 (8) | −0.0077 (6) | 0.0040 (6) | −0.0056 (6) |
| N1 | 0.0249 (8) | 0.0281 (8) | 0.0182 (7) | −0.0030 (6) | 0.0018 (6) | 0.0025 (6) |
| N2 | 0.0206 (7) | 0.0258 (8) | 0.0206 (7) | 0.0013 (6) | 0.0001 (6) | 0.0013 (6) |
| N3 | 0.0398 (10) | 0.0399 (10) | 0.0290 (9) | −0.0098 (8) | 0.0089 (7) | −0.0087 (7) |
| C1 | 0.0261 (9) | 0.0254 (9) | 0.0202 (9) | 0.0000 (7) | 0.0042 (7) | −0.0027 (7) |
| C2 | 0.0248 (9) | 0.0246 (9) | 0.0194 (8) | 0.0003 (7) | 0.0047 (7) | −0.0027 (7) |
| C3 | 0.0260 (9) | 0.0227 (8) | 0.0183 (8) | 0.0012 (7) | 0.0062 (7) | −0.0044 (6) |
| C4 | 0.0316 (9) | 0.0254 (9) | 0.0210 (9) | 0.0025 (7) | 0.0070 (7) | −0.0004 (7) |
| C5 | 0.0393 (10) | 0.0244 (9) | 0.0246 (9) | −0.0023 (8) | 0.0138 (8) | −0.0009 (7) |
| C6 | 0.0305 (10) | 0.0310 (10) | 0.0309 (10) | −0.0069 (8) | 0.0138 (8) | −0.0067 (7) |
| C7 | 0.0239 (9) | 0.0313 (9) | 0.0246 (9) | −0.0011 (7) | 0.0057 (7) | −0.0046 (7) |
| C8 | 0.0213 (8) | 0.0277 (9) | 0.0183 (8) | −0.0019 (7) | 0.0026 (7) | 0.0009 (6) |
| C9 | 0.0258 (9) | 0.0219 (8) | 0.0188 (8) | −0.0004 (7) | 0.0056 (7) | 0.0044 (6) |
| C10 | 0.0253 (9) | 0.0280 (9) | 0.0204 (8) | −0.0023 (7) | 0.0066 (7) | 0.0023 (7) |
| C11 | 0.0305 (10) | 0.0267 (9) | 0.0205 (9) | −0.0050 (7) | 0.0045 (7) | 0.0000 (7) |
| C12 | 0.0397 (11) | 0.0254 (9) | 0.0256 (9) | 0.0033 (8) | 0.0097 (8) | −0.0014 (7) |
| C13 | 0.0286 (10) | 0.0329 (10) | 0.0343 (10) | 0.0066 (8) | 0.0079 (8) | 0.0000 (8) |
| C14 | 0.0253 (9) | 0.0279 (9) | 0.0271 (9) | 0.0009 (7) | 0.0034 (7) | 0.0000 (7) |
| O1—C1 | 1.250 (2) | C5—H5 | 0.9300 |
| O2—N3 | 1.224 (2) | C6—C7 | 1.382 (2) |
| O3—N3 | 1.224 (2) | C6—H6 | 0.9300 |
| N1—C1 | 1.344 (2) | C7—H7 | 0.9300 |
| N1—C8 | 1.465 (2) | C8—C9 | 1.527 (2) |
| N1—H1 | 0.857 (9) | C8—H8 | 0.9800 |
| N2—C3 | 1.373 (2) | C9—C10 | 1.390 (2) |
| N2—C8 | 1.456 (2) | C9—C14 | 1.390 (2) |
| N2—H2 | 0.853 (9) | C10—C11 | 1.381 (2) |
| N3—C11 | 1.466 (2) | C10—H10 | 0.9300 |
| C1—C2 | 1.480 (2) | C11—C12 | 1.382 (3) |
| C2—C7 | 1.392 (2) | C12—C13 | 1.377 (3) |
| C2—C3 | 1.410 (2) | C12—H12 | 0.9300 |
| C3—C4 | 1.408 (2) | C13—C14 | 1.386 (3) |
| C4—C5 | 1.382 (2) | C13—H13 | 0.9300 |
| C4—H4 | 0.9300 | C14—H14 | 0.9300 |
| C5—C6 | 1.392 (3) | ||
| C1—N1—C8 | 124.04 (14) | C6—C7—C2 | 120.70 (16) |
| C1—N1—H1 | 116.9 (13) | C6—C7—H7 | 119.7 |
| C8—N1—H1 | 116.9 (13) | C2—C7—H7 | 119.7 |
| C3—N2—C8 | 119.58 (14) | N2—C8—N1 | 108.59 (13) |
| C3—N2—H2 | 118.2 (13) | N2—C8—C9 | 112.76 (13) |
| C8—N2—H2 | 114.0 (13) | N1—C8—C9 | 112.21 (13) |
| O3—N3—O2 | 123.41 (17) | N2—C8—H8 | 107.7 |
| O3—N3—C11 | 118.77 (15) | N1—C8—H8 | 107.7 |
| O2—N3—C11 | 117.82 (17) | C9—C8—H8 | 107.7 |
| O1—C1—N1 | 121.41 (16) | C10—C9—C14 | 118.78 (16) |
| O1—C1—C2 | 122.46 (15) | C10—C9—C8 | 119.10 (15) |
| N1—C1—C2 | 116.08 (14) | C14—C9—C8 | 122.11 (15) |
| C7—C2—C3 | 120.22 (16) | C11—C10—C9 | 118.77 (16) |
| C7—C2—C1 | 120.68 (15) | C11—C10—H10 | 120.6 |
| C3—C2—C1 | 118.99 (15) | C9—C10—H10 | 120.6 |
| N2—C3—C4 | 121.45 (15) | C10—C11—C12 | 123.05 (16) |
| N2—C3—C2 | 119.73 (15) | C10—C11—N3 | 118.41 (16) |
| C4—C3—C2 | 118.70 (16) | C12—C11—N3 | 118.53 (16) |
| C5—C4—C3 | 119.74 (16) | C13—C12—C11 | 117.73 (17) |
| C5—C4—H4 | 120.1 | C13—C12—H12 | 121.1 |
| C3—C4—H4 | 120.1 | C11—C12—H12 | 121.1 |
| C4—C5—C6 | 121.46 (17) | C12—C13—C14 | 120.52 (17) |
| C4—C5—H5 | 119.3 | C12—C13—H13 | 119.7 |
| C6—C5—H5 | 119.3 | C14—C13—H13 | 119.7 |
| C7—C6—C5 | 119.16 (16) | C13—C14—C9 | 121.12 (16) |
| C7—C6—H6 | 120.4 | C13—C14—H14 | 119.4 |
| C5—C6—H6 | 120.4 | C9—C14—H14 | 119.4 |
| H··· | ||||
| N1—H1···O1i | 0.857 (9) | 2.075 (10) | 2.9318 (19) | 179.3 (19) |
| N2—H2···O1ii | 0.853 (9) | 2.165 (11) | 2.9837 (18) | 160.9 (17) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1⋯O1i | 0.857 (9) | 2.075 (10) | 2.9318 (19) | 179.3 (19) |
| N2—H2⋯O1ii | 0.853 (9) | 2.165 (11) | 2.9837 (18) | 160.9 (17) |
Symmetry codes: (i) ; (ii) .