Literature DB >> 21201468

1-Ethyl-6-fluoro-7-(4-methyl-piperazin-4-ium-1-yl)-4-oxo-1,4-dihydroquinoline-3-carboxylate hexa-hydrate.

Zhe An, Qing-Cheng Liang.   

Abstract

In the title compound, C(17)H(20)FN(3)O(3)·6H(2)O, the pefloxacin (pef) neutral zwitterion is accompanied by six water mol-ecules of hydration. An extensive network of O-H⋯O and N-H⋯O hydrogen bonds help to establish the crystal packing.

Entities:  

Year:  2008        PMID: 21201468      PMCID: PMC2960169          DOI: 10.1107/S1600536808000421

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For metal complexes of the pef anion, see: Baenziger et al. (1986 ▶); An, Huang & Qi (2007 ▶); An, Qi & Huang (2007 ▶). For background on the medicinal uses of Hpef, see: Mizuki et al. (1996 ▶).

Experimental

Crystal data

C17H20FN3O3·6H2O M = 441.46 Monoclinic, a = 8.0925 (15) Å b = 24.075 (5) Å c = 10.8006 (19) Å β = 92.064 (3)° V = 2102.9 (7) Å3 Z = 4 Mo Kα radiation μ = 0.12 mm−1 T = 296 (2) K 0.34 × 0.26 × 0.18 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 1998 ▶) T min = 0.960, T max = 0.978 10920 measured reflections 3743 independent reflections 2239 reflections with I > 2σ(I) R int = 0.051

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.134 S = 1.02 3743 reflections 312 parameters 19 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.22 e Å−3 Δρmin = −0.20 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT-Plus (Bruker, 1998 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Bruker, 1998 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808000421/hb2680sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808000421/hb2680Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H20FN3O3·6H2OF000 = 944
Mr = 441.46Dx = 1.394 Mg m3
Monoclinic, P21/nMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 10069 reflections
a = 8.0925 (15) Åθ = 2.1–25.1º
b = 24.075 (5) ŵ = 0.12 mm1
c = 10.8006 (19) ÅT = 296 (2) K
β = 92.064 (3)ºPrism, colorless
V = 2102.9 (7) Å30.34 × 0.26 × 0.18 mm
Z = 4
Bruker SMART CCD diffractometer3743 independent reflections
Radiation source: fine-focus sealed tube2239 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.051
T = 295(2) Kθmax = 25.1º
ω scansθmin = 2.1º
Absorption correction: multi-scan(SADABS; Bruker, 1998)h = −9→9
Tmin = 0.960, Tmax = 0.978k = −25→28
10920 measured reflectionsl = −8→12
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.048H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.134  w = 1/[σ2(Fo2) + (0.0593P)2 + 0.0315P] where P = (Fo2 + 2Fc2)/3
S = 1.02(Δ/σ)max < 0.001
3743 reflectionsΔρmax = 0.22 e Å3
312 parametersΔρmin = −0.20 e Å3
19 restraintsExtinction correction: none
Primary atom site location: structure-invariant direct methods
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
F10.4982 (2)0.12293 (6)0.56081 (13)0.0524 (5)
O10.9475 (3)−0.18675 (8)0.62111 (17)0.0512 (5)
O20.9816 (3)−0.13364 (8)0.78658 (17)0.0548 (6)
O30.7598 (2)−0.04158 (7)0.76314 (16)0.0436 (5)
O1W1.0319 (4)−0.28815 (9)0.7094 (2)0.0761 (7)
H1W11.010 (5)−0.2538 (6)0.695 (3)0.114*
H1W21.104 (4)−0.2906 (13)0.768 (3)0.114*
O2W1.0567 (3)−0.19330 (10)0.9952 (2)0.0687 (7)
H2W11.042 (4)−0.1772 (13)0.9256 (17)0.103*
H2W21.121 (4)−0.1734 (12)1.042 (2)0.103*
O3W1.2764 (3)−0.26876 (9)0.92250 (17)0.0558 (6)
H3W21.318 (4)−0.2872 (11)0.9835 (19)0.084*
H3W11.204 (3)−0.2460 (12)0.950 (2)0.084*
O4W0.6261 (3)0.02774 (10)0.9339 (2)0.0637 (6)
O5W1.0677 (3)−0.04707 (12)0.9484 (2)0.0817 (8)
H5W11.022 (4)−0.0705 (13)0.899 (3)0.123*
H5W20.997 (3)−0.0308 (15)0.990 (4)0.123*
O6W1.2719 (3)−0.13973 (11)1.1601 (3)0.0914 (9)
H6W11.360 (3)−0.1585 (13)1.176 (4)0.137*
H6W21.298 (5)−0.1066 (7)1.143 (4)0.137*
N10.8676 (2)−0.05154 (8)0.39571 (18)0.0325 (5)
N20.5711 (3)0.12232 (8)0.31502 (18)0.0351 (5)
N30.4587 (3)0.20866 (9)0.1516 (2)0.0399 (6)
H3N0.552 (2)0.2224 (11)0.119 (2)0.060*
C10.9405 (3)−0.14034 (11)0.6754 (3)0.0361 (6)
C20.8807 (3)−0.09193 (10)0.6006 (2)0.0318 (6)
C30.7935 (3)−0.04596 (10)0.6512 (2)0.0320 (6)
C40.7415 (3)−0.00337 (10)0.5619 (2)0.0303 (6)
C50.6494 (3)0.04228 (10)0.6011 (2)0.0350 (6)
H50.62340.04540.68400.042*
C60.5981 (3)0.08168 (11)0.5202 (2)0.0354 (6)
C70.6356 (3)0.08101 (11)0.3938 (2)0.0327 (6)
C80.7274 (3)0.03613 (10)0.3540 (2)0.0318 (6)
H80.75560.03410.27140.038*
C90.7785 (3)−0.00614 (10)0.4361 (2)0.0294 (6)
C100.9112 (3)−0.09195 (10)0.4773 (2)0.0337 (6)
H100.9671−0.12250.44670.040*
C110.6038 (3)0.18058 (10)0.3458 (2)0.0404 (7)
H11B0.71000.19160.31490.048*
H11A0.60760.18530.43510.048*
C120.4696 (4)0.21632 (11)0.2885 (2)0.0422 (7)
H12B0.36460.20670.32330.051*
H12A0.49240.25500.30760.051*
C130.4413 (3)0.14871 (11)0.1185 (2)0.0390 (7)
H13B0.44750.14450.02950.047*
H13A0.33380.13550.14240.047*
C140.5745 (3)0.11382 (11)0.1818 (2)0.0391 (7)
H14B0.55600.07490.16270.047*
H14A0.68180.12430.15220.047*
C150.3210 (4)0.24236 (14)0.0946 (3)0.0607 (9)
H15A0.31800.23740.00640.091*
H15B0.33870.28090.11380.091*
H15C0.21790.23050.12700.091*
C160.9107 (3)−0.05917 (12)0.2649 (2)0.0390 (7)
H16B1.0083−0.08240.26170.047*
H16A0.9375−0.02330.22990.047*
C170.7735 (4)−0.08525 (15)0.1874 (3)0.0642 (10)
H17A0.7489−0.12130.21980.096*
H17B0.8072−0.08880.10350.096*
H17C0.6766−0.06230.18950.096*
H4W10.657 (4)0.0071 (13)0.874 (2)0.096*
H4W20.709 (3)0.0325 (14)0.984 (2)0.096*
U11U22U33U12U13U23
F10.0657 (11)0.0498 (11)0.0420 (10)0.0227 (9)0.0072 (8)−0.0003 (7)
O10.0692 (14)0.0320 (12)0.0515 (13)0.0057 (10)−0.0116 (10)0.0010 (9)
O20.0748 (15)0.0505 (13)0.0380 (13)0.0082 (11)−0.0155 (10)0.0037 (9)
O30.0604 (13)0.0411 (12)0.0293 (11)0.0039 (10)0.0017 (9)0.0017 (8)
O1W0.097 (2)0.0451 (14)0.0843 (19)−0.0009 (14)−0.0253 (14)0.0077 (12)
O2W0.0744 (18)0.0650 (16)0.0660 (16)0.0009 (13)−0.0099 (13)0.0230 (12)
O3W0.0567 (15)0.0574 (15)0.0531 (14)−0.0038 (11)−0.0015 (10)0.0151 (10)
O4W0.0667 (15)0.0719 (17)0.0519 (15)0.0112 (13)−0.0060 (11)−0.0213 (11)
O5W0.091 (2)0.081 (2)0.0720 (19)−0.0046 (16)−0.0108 (14)−0.0229 (12)
O6W0.107 (2)0.0690 (18)0.096 (2)0.0147 (16)−0.0310 (17)−0.0081 (16)
N10.0363 (13)0.0324 (12)0.0290 (12)0.0011 (10)0.0018 (9)−0.0018 (10)
N20.0484 (14)0.0282 (12)0.0280 (12)−0.0011 (11)−0.0074 (10)−0.0007 (9)
N30.0408 (15)0.0389 (14)0.0400 (14)0.0036 (11)0.0015 (11)0.0076 (10)
C10.0346 (16)0.0341 (16)0.0395 (17)−0.0036 (13)−0.0005 (12)0.0017 (13)
C20.0330 (15)0.0322 (15)0.0298 (15)−0.0020 (12)−0.0040 (11)0.0008 (11)
C30.0324 (15)0.0327 (15)0.0305 (15)−0.0051 (12)−0.0031 (11)−0.0002 (12)
C40.0325 (15)0.0285 (14)0.0295 (14)−0.0049 (12)−0.0025 (11)−0.0001 (11)
C50.0409 (16)0.0380 (16)0.0258 (14)0.0016 (13)−0.0013 (11)−0.0029 (12)
C60.0377 (16)0.0359 (16)0.0325 (15)0.0056 (13)−0.0003 (12)−0.0046 (12)
C70.0316 (14)0.0332 (15)0.0327 (15)−0.0062 (12)−0.0045 (11)0.0026 (12)
C80.0338 (15)0.0317 (15)0.0299 (14)−0.0024 (12)0.0026 (11)0.0000 (11)
C90.0278 (14)0.0304 (14)0.0299 (14)−0.0053 (12)0.0009 (11)−0.0011 (11)
C100.0340 (15)0.0266 (14)0.0405 (16)0.0019 (12)−0.0015 (12)−0.0020 (12)
C110.0492 (18)0.0333 (16)0.0378 (16)−0.0046 (14)−0.0090 (12)−0.0014 (12)
C120.0522 (19)0.0367 (16)0.0379 (17)0.0030 (14)0.0035 (13)−0.0014 (12)
C130.0450 (17)0.0415 (17)0.0304 (15)−0.0026 (14)−0.0021 (12)0.0020 (12)
C140.0504 (17)0.0338 (16)0.0329 (16)0.0014 (13)−0.0010 (12)0.0005 (12)
C150.053 (2)0.061 (2)0.068 (2)0.0162 (17)−0.0062 (16)0.0190 (16)
C160.0476 (17)0.0404 (16)0.0294 (15)0.0017 (13)0.0086 (12)−0.0007 (12)
C170.073 (2)0.077 (2)0.0430 (19)−0.019 (2)0.0019 (16)−0.0111 (16)
F1—C61.363 (3)C3—C41.459 (3)
C1—O11.264 (3)C4—C51.402 (3)
C1—O21.245 (3)C4—C91.404 (3)
C3—O31.253 (3)C5—C61.345 (3)
O1W—H1W10.857 (10)C5—H50.9300
O1W—H1W20.85 (3)C6—C71.409 (3)
O2W—H2W10.851 (10)C7—C81.388 (3)
O2W—H2W20.86 (3)C8—C91.402 (3)
O3W—H3W20.852 (10)C8—H80.9300
O3W—H3W10.86 (3)C10—H100.9300
O4W—H4W10.86 (3)C11—C121.501 (4)
O4W—H4W20.851 (10)C11—H11B0.9700
O5W—H5W10.85 (3)C11—H11A0.9700
O5W—H5W20.84 (3)C12—H12B0.9700
O6W—H6W10.86 (3)C12—H12A0.9700
O6W—H6W20.847 (10)C13—C141.510 (4)
N1—C101.351 (3)C13—H13B0.9700
N1—C91.388 (3)C13—H13A0.9700
N1—C161.479 (3)C14—H14B0.9700
N2—C71.397 (3)C14—H14A0.9700
N2—C141.454 (3)C15—H15A0.9600
N2—C111.463 (3)C15—H15B0.9600
N3—C121.490 (3)C15—H15C0.9600
N3—C131.492 (3)C16—C171.504 (4)
N3—C151.493 (3)C16—H16B0.9700
N3—H3N0.910 (10)C16—H16A0.9700
C1—C21.489 (4)C17—H17A0.9600
C2—C101.363 (3)C17—H17B0.9600
C2—C31.431 (3)C17—H17C0.9600
H1W1—O1W—H1W2109.3 (17)N1—C10—C2125.8 (2)
H2W1—O2W—H2W2109.4 (16)N1—C10—H10117.1
H3W2—O3W—H3W1108.6 (16)C2—C10—H10117.1
H4W1—O4W—H4W2108.2 (16)N2—C11—C12109.5 (2)
H5W1—O5W—H5W2110.9 (18)N2—C11—H11B109.8
H6W1—O6W—H6W2109.4 (17)C12—C11—H11B109.8
C10—N1—C9119.2 (2)N2—C11—H11A109.8
C10—N1—C16118.0 (2)C12—C11—H11A109.8
C9—N1—C16122.7 (2)H11B—C11—H11A108.2
C7—N2—C14118.8 (2)N3—C12—C11110.8 (2)
C7—N2—C11118.89 (19)N3—C12—H12B109.5
C14—N2—C11110.49 (19)C11—C12—H12B109.5
C12—N3—C13111.04 (19)N3—C12—H12A109.5
C12—N3—C15111.0 (2)C11—C12—H12A109.5
C13—N3—C15111.4 (2)H12B—C12—H12A108.1
C12—N3—H3N108.4 (19)N3—C13—C14111.7 (2)
C13—N3—H3N109.5 (19)N3—C13—H13B109.3
C15—N3—H3N105.3 (19)C14—C13—H13B109.3
O2—C1—O1123.2 (2)N3—C13—H13A109.3
O2—C1—C2119.5 (2)C14—C13—H13A109.3
O1—C1—C2117.3 (2)H13B—C13—H13A107.9
C10—C2—C3118.9 (2)N2—C14—C13109.3 (2)
C10—C2—C1117.6 (2)N2—C14—H14B109.8
C3—C2—C1123.6 (2)C13—C14—H14B109.8
O3—C3—C2124.1 (2)N2—C14—H14A109.8
O3—C3—C4120.7 (2)C13—C14—H14A109.8
C2—C3—C4115.2 (2)H14B—C14—H14A108.3
C5—C4—C9117.6 (2)N3—C15—H15A109.5
C5—C4—C3119.7 (2)N3—C15—H15B109.5
C9—C4—C3122.7 (2)H15A—C15—H15B109.5
C6—C5—C4120.8 (2)N3—C15—H15C109.5
C6—C5—H5119.6H15A—C15—H15C109.5
C4—C5—H5119.6H15B—C15—H15C109.5
C5—C6—F1118.5 (2)N1—C16—C17112.9 (2)
C5—C6—C7123.3 (2)N1—C16—H16B109.0
F1—C6—C7118.1 (2)C17—C16—H16B109.0
C8—C7—N2123.9 (2)N1—C16—H16A109.0
C8—C7—C6116.4 (2)C17—C16—H16A109.0
N2—C7—C6119.5 (2)H16B—C16—H16A107.8
C7—C8—C9121.2 (2)C16—C17—H17A109.5
C7—C8—H8119.4C16—C17—H17B109.5
C9—C8—H8119.4H17A—C17—H17B109.5
N1—C9—C8121.2 (2)C16—C17—H17C109.5
N1—C9—C4118.2 (2)H17A—C17—H17C109.5
C8—C9—C4120.6 (2)H17B—C17—H17C109.5
O2—C1—C2—C10149.2 (3)C10—N1—C9—C8−178.5 (2)
O1—C1—C2—C10−30.5 (3)C16—N1—C9—C8−1.6 (3)
O2—C1—C2—C3−30.8 (4)C10—N1—C9—C41.9 (3)
O1—C1—C2—C3149.5 (2)C16—N1—C9—C4178.8 (2)
C10—C2—C3—O3−179.6 (2)C7—C8—C9—N1178.8 (2)
C1—C2—C3—O30.5 (4)C7—C8—C9—C4−1.7 (3)
C10—C2—C3—C41.5 (3)C5—C4—C9—N1−179.1 (2)
C1—C2—C3—C4−178.4 (2)C3—C4—C9—N10.3 (3)
O3—C3—C4—C5−1.5 (3)C5—C4—C9—C81.3 (3)
C2—C3—C4—C5177.4 (2)C3—C4—C9—C8−179.3 (2)
O3—C3—C4—C9179.1 (2)C9—N1—C10—C2−2.5 (4)
C2—C3—C4—C9−2.0 (3)C16—N1—C10—C2−179.6 (2)
C9—C4—C5—C60.3 (4)C3—C2—C10—N10.6 (4)
C3—C4—C5—C6−179.1 (2)C1—C2—C10—N1−179.4 (2)
C4—C5—C6—F1175.0 (2)C7—N2—C11—C12−154.7 (2)
C4—C5—C6—C7−1.7 (4)C14—N2—C11—C1262.7 (3)
C14—N2—C7—C811.0 (4)C13—N3—C12—C1153.2 (3)
C11—N2—C7—C8−128.5 (3)C15—N3—C12—C11177.7 (2)
C14—N2—C7—C6−164.6 (2)N2—C11—C12—N3−58.1 (3)
C11—N2—C7—C656.0 (3)C12—N3—C13—C14−52.3 (3)
C5—C6—C7—C81.3 (4)C15—N3—C13—C14−176.6 (2)
F1—C6—C7—C8−175.4 (2)C7—N2—C14—C13156.2 (2)
C5—C6—C7—N2177.2 (2)C11—N2—C14—C13−61.2 (3)
F1—C6—C7—N20.4 (3)N3—C13—C14—N256.0 (3)
N2—C7—C8—C9−175.3 (2)C10—N1—C16—C1793.5 (3)
C6—C7—C8—C90.4 (3)C9—N1—C16—C17−83.4 (3)
D—H···AD—HH···AD···AD—H···A
O1W—H1W1···O10.857 (10)1.866 (12)2.700 (3)164 (3)
O1W—H1W2···O3W0.85 (3)2.201 (16)3.017 (3)162 (3)
O2W—H2W1···O20.851 (10)1.881 (13)2.722 (3)170 (4)
O2W—H2W2···O6W0.86 (3)1.91 (3)2.765 (3)171 (3)
O3W—H3W2···O1i0.852 (10)1.896 (13)2.730 (3)166 (3)
O3W—H3W1···O2W0.86 (3)1.82 (3)2.679 (3)175 (3)
O6W—H6W1···O1Wi0.86 (3)1.92 (3)2.765 (4)170 (4)
O6W—H6W2···O4Wii0.847 (10)2.17 (3)3.007 (4)170 (4)
N3—H3N···O3Wiii0.910 (10)1.847 (13)2.730 (3)163 (3)
O4W—H4W1···O30.86 (3)1.89 (3)2.739 (3)169 (3)
O4W—H4W2···O5Wii0.85 (3)1.959 (15)2.783 (3)163 (3)
O5W—H5W1···O20.85 (3)1.97 (3)2.792 (3)164 (4)
O5W—H5W1···O30.85 (3)2.63 (4)3.142 (3)120 (3)
O5W—H5W2···O5Wii0.84 (3)2.06 (2)2.769 (5)142 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1W—H1W1⋯O10.857 (10)1.866 (12)2.700 (3)164 (3)
O1W—H1W2⋯O3W0.85 (3)2.201 (16)3.017 (3)162 (3)
O2W—H2W1⋯O20.851 (10)1.881 (13)2.722 (3)170 (4)
O2W—H2W2⋯O6W0.86 (3)1.91 (3)2.765 (3)171 (3)
O3W—H3W2⋯O1i0.852 (10)1.896 (13)2.730 (3)166 (3)
O3W—H3W1⋯O2W0.86 (3)1.82 (3)2.679 (3)175 (3)
O6W—H6W1⋯O1Wi0.86 (3)1.92 (3)2.765 (4)170 (4)
O6W—H6W2⋯O4Wii0.847 (10)2.17 (3)3.007 (4)170 (4)
N3—H3N⋯O3Wiii0.910 (10)1.847 (13)2.730 (3)163 (3)
O4W—H4W1⋯O30.86 (3)1.89 (3)2.739 (3)169 (3)
O4W—H4W2⋯O5Wii0.85 (3)1.959 (15)2.783 (3)163 (3)
O5W—H5W1⋯O20.85 (3)1.97 (3)2.792 (3)164 (4)
O5W—H5W1⋯O30.85 (3)2.63 (4)3.142 (3)120 (3)
O5W—H5W2⋯O5Wii0.84 (3)2.06 (2)2.769 (5)142 (3)

Symmetry codes: (i) ; (ii) ; (iii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 2.  Pharmacokinetic interactions related to the chemical structures of fluoroquinolones.

Authors:  Y Mizuki; I Fujiwara; T Yamaguchi
Journal:  J Antimicrob Chemother       Date:  1996-05       Impact factor: 5.790

  2 in total
  1 in total

1.  4-(3-Carb-oxy-1-ethyl-6-fluoro-4-oxo-1,4-dihydro-7-quinol-yl)-1-methyl-piper-azin-ium picrate.

Authors:  Hoong-Kun Fun; Madhukar Hemamalini; Divya N Shetty; B Narayana; H S Yathirajan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-02-27
  1 in total

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