Literature DB >> 21201420

Morpholinium perchlorate.

Mikhail S Grigoriev1, Konstantin E German, Alesia Ya Maruk.   

Abstract

In the title salt, C(4)H(10)NO(+)·ClO(4) (-), which has three independent formula units, the cations are linked into chains along [100] by N-H⋯O hydrogen bonds. Each cation acts both as a donor and as an acceptor, and every cation makes one N-H⋯O hydrogen bond with a ClO(4) (-) anion. The crystal studied was an inversion twin.

Entities:  

Year:  2008        PMID: 21201420      PMCID: PMC2960441          DOI: 10.1107/S1600536807068134

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

See Grigoriev et al. (2007 ▶) for the structure of morpholinium tetra­oxidorhenate(VII).

Experimental

Crystal data

C4H10NOClO4 M = 187.58 Orthorhombic, a = 8.1515 (3) Å b = 9.5435 (4) Å c = 28.9022 (12) Å V = 2248.41 (16) Å3 Z = 12 Mo Kα radiation μ = 0.49 mm−1 T = 100 (2) K 0.24 × 0.20 × 0.16 mm

Data collection

Bruker Kappa APEXII area-detector diffractometer Absorption correction: none 31159 measured reflections 6453 independent reflections 5928 reflections with I > 2σ(I) R int = 0.038

Refinement

R[F 2 > 2σ(F 2)] = 0.025 wR(F 2) = 0.062 S = 1.03 6453 reflections 323 parameters 6 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.30 e Å−3 Δρmin = −0.32 e Å−3 Absolute structure: Flack (1983 ▶), 2793 Friedel pairs Flack parameter: 0.42 (3) Data collection: APEX2 (Bruker, 2006 ▶); cell refinement: SAINT-Plus (Bruker, 1998 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997a ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997a ▶); molecular graphics: SHELXTL (Sheldrick, 1997b ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536807068134/ng2409sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536807068134/ng2409Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C4H10NO+·ClO4F000 = 1176
Mr = 187.58Dx = 1.662 Mg m3
Orthorhombic, P212121Mo Kα radiation λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 7054 reflections
a = 8.1515 (3) Åθ = 2.3–30.0º
b = 9.5435 (4) ŵ = 0.49 mm1
c = 28.9022 (12) ÅT = 100 (2) K
V = 2248.41 (16) Å3Fragment, colourless
Z = 120.24 × 0.20 × 0.16 mm
Bruker KappaAPEXII area-detector diffractometer5928 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.038
Monochromator: graphiteθmax = 30.0º
T = 100(2) Kθmin = 2.3º
ω and φ scansh = −11→11
Absorption correction: none (SADABS; Sheldrick, 2004?)k = −13→13
31159 measured reflectionsl = −40→40
6453 independent reflections
Refinement on F2Hydrogen site location: mixed
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.025  w = 1/[σ2(Fo2) + (0.0368P)2 + 0.1234P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.062(Δ/σ)max = 0.001
S = 1.03Δρmax = 0.30 e Å3
6453 reflectionsΔρmin = −0.32 e Å3
323 parametersExtinction correction: none
6 restraintsAbsolute structure: Flack (1983), 2793 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.42 (3)
Secondary atom site location: difference Fourier map
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.57617 (4)−0.38371 (3)0.659062 (11)0.01229 (6)
Cl20.37184 (4)0.16395 (3)0.506534 (10)0.01225 (6)
Cl30.57257 (4)−0.35661 (3)0.339378 (11)0.01296 (7)
O10.68287 (14)−0.37350 (14)0.69869 (4)0.0261 (3)
O20.53026 (15)−0.24599 (12)0.64345 (5)0.0297 (3)
O30.43207 (14)−0.46173 (11)0.67131 (4)0.0207 (2)
O40.66220 (12)−0.45314 (11)0.62201 (3)0.0157 (2)
O50.34519 (14)0.23379 (12)0.46318 (4)0.0237 (2)
O60.22474 (13)0.09516 (12)0.52183 (4)0.0246 (2)
O70.50117 (12)0.06236 (11)0.50191 (4)0.0248 (2)
O80.41766 (13)0.26762 (11)0.54084 (4)0.0189 (2)
O90.53099 (16)−0.22094 (13)0.35767 (5)0.0342 (3)
O100.67421 (14)−0.34228 (16)0.29901 (4)0.0321 (3)
O110.42568 (14)−0.43179 (12)0.32752 (4)0.0236 (2)
O120.66235 (13)−0.43202 (11)0.37422 (3)0.0168 (2)
O130.69481 (11)0.24689 (11)0.67280 (4)0.0155 (2)
O140.22067 (11)0.76837 (11)0.49220 (3)0.0171 (2)
O150.69469 (12)0.27281 (11)0.32867 (4)0.0165 (2)
N10.45845 (14)0.02905 (12)0.66878 (4)0.0119 (2)
H1C0.434 (2)−0.0603 (10)0.6668 (6)0.014*
H1D0.3666 (14)0.0755 (16)0.6699 (6)0.014*
N20.44656 (13)0.54724 (12)0.50755 (4)0.0135 (2)
H2C0.5419 (14)0.5912 (16)0.5086 (6)0.016*
H2D0.462 (2)0.4558 (10)0.5114 (6)0.016*
N30.45865 (14)0.05497 (12)0.33319 (4)0.0122 (2)
H3C0.3684 (15)0.1049 (17)0.3313 (6)0.015*
H3D0.440 (2)−0.0347 (10)0.3344 (6)0.015*
C10.55582 (18)0.05548 (15)0.71163 (5)0.0144 (3)
H1A0.492 (2)0.0284 (19)0.7388 (6)0.017*
H1B0.646 (2)0.0006 (19)0.7113 (6)0.017*
C20.60347 (17)0.20873 (15)0.71312 (5)0.0164 (3)
H2A0.50330.26710.71510.020*
H2B0.67050.22680.74110.020*
C30.59875 (17)0.22590 (15)0.63150 (5)0.0143 (3)
H3A0.66280.25560.60410.017*
H3B0.49810.28380.63300.017*
C40.55258 (18)0.07310 (14)0.62683 (5)0.0144 (3)
H4A0.48470.05940.59880.017*
H4B0.65280.01530.62370.017*
C50.33638 (17)0.60033 (17)0.54496 (5)0.0167 (3)
H5A0.39050.58940.57540.020*
H5B0.23310.54580.54530.020*
C60.29959 (18)0.75241 (16)0.53623 (5)0.0188 (3)
H6A0.22730.78890.56100.023*
H6B0.40280.80700.53670.023*
C70.32779 (17)0.72437 (16)0.45577 (5)0.0164 (3)
H7A0.42930.78130.45640.020*
H7B0.27360.73950.42550.020*
C80.37108 (18)0.57105 (15)0.46105 (4)0.0148 (3)
H8A0.27100.51310.45780.018*
H8B0.44920.54310.43650.018*
C90.55216 (18)0.10032 (15)0.37512 (4)0.0150 (3)
H9A0.65210.04230.37860.018*
H9B0.48370.08790.40310.018*
C100.59916 (17)0.25284 (15)0.36984 (5)0.0162 (3)
H10A0.49880.31100.36820.019*
H10B0.66340.28320.39710.019*
C110.60345 (17)0.23347 (15)0.28832 (5)0.0168 (3)
H11A0.67040.25100.26030.020*
H11B0.50290.29130.28620.020*
C120.55698 (18)0.07970 (14)0.29050 (5)0.0146 (3)
H12A0.49200.05390.26290.018*
H12B0.65720.02110.29110.018*
U11U22U33U12U13U23
Cl10.01222 (14)0.01077 (13)0.01386 (13)−0.00072 (11)0.00049 (11)−0.00074 (11)
Cl20.01095 (11)0.01167 (13)0.01412 (13)0.00027 (10)−0.00132 (11)−0.00073 (11)
Cl30.01248 (14)0.01263 (14)0.01377 (13)−0.00160 (11)−0.00006 (11)0.00151 (11)
O10.0178 (5)0.0441 (8)0.0165 (5)−0.0076 (5)−0.0015 (4)−0.0063 (5)
O20.0395 (7)0.0108 (5)0.0389 (7)0.0094 (5)0.0117 (5)0.0024 (5)
O30.0130 (4)0.0230 (5)0.0262 (5)−0.0054 (4)0.0027 (4)0.0000 (4)
O40.0170 (5)0.0146 (5)0.0155 (4)0.0036 (4)0.0009 (4)−0.0010 (4)
O50.0302 (6)0.0260 (6)0.0150 (5)0.0064 (5)−0.0028 (4)0.0020 (4)
O60.0154 (5)0.0216 (6)0.0368 (6)−0.0073 (4)0.0043 (4)−0.0036 (5)
O70.0189 (5)0.0193 (5)0.0361 (6)0.0093 (4)0.0022 (5)0.0007 (5)
O80.0271 (5)0.0143 (5)0.0153 (5)−0.0058 (4)−0.0048 (4)−0.0006 (4)
O90.0453 (8)0.0124 (5)0.0449 (8)0.0121 (5)−0.0133 (6)−0.0033 (5)
O100.0233 (6)0.0579 (9)0.0150 (5)−0.0133 (6)0.0023 (4)0.0081 (6)
O110.0126 (5)0.0272 (6)0.0311 (6)−0.0067 (4)−0.0034 (4)0.0013 (5)
O120.0195 (5)0.0152 (5)0.0158 (4)0.0042 (4)−0.0018 (4)0.0001 (4)
O130.0128 (4)0.0172 (5)0.0166 (5)−0.0049 (4)−0.0022 (4)0.0006 (4)
O140.0143 (4)0.0174 (5)0.0196 (5)0.0057 (4)−0.0010 (4)−0.0015 (4)
O150.0129 (5)0.0185 (5)0.0181 (5)−0.0061 (4)0.0007 (4)−0.0014 (4)
N10.0104 (5)0.0102 (5)0.0152 (5)0.0001 (4)−0.0003 (4)−0.0012 (4)
N20.0108 (5)0.0101 (5)0.0195 (6)0.0003 (4)−0.0001 (4)0.0018 (4)
N30.0115 (6)0.0092 (5)0.0159 (5)0.0000 (4)0.0008 (4)0.0014 (4)
C10.0158 (7)0.0162 (7)0.0112 (6)−0.0004 (5)−0.0004 (5)0.0012 (5)
C20.0180 (7)0.0167 (7)0.0145 (6)−0.0036 (5)−0.0015 (5)−0.0027 (5)
C30.0163 (7)0.0131 (6)0.0133 (6)−0.0010 (5)−0.0013 (5)0.0009 (5)
C40.0187 (7)0.0127 (6)0.0118 (6)0.0001 (5)−0.0002 (5)−0.0013 (5)
C50.0146 (6)0.0244 (7)0.0109 (5)−0.0002 (5)0.0002 (5)0.0009 (5)
C60.0183 (7)0.0210 (8)0.0170 (7)0.0030 (5)−0.0020 (5)−0.0072 (6)
C70.0159 (6)0.0181 (7)0.0152 (6)0.0024 (5)0.0017 (5)0.0045 (5)
C80.0166 (6)0.0156 (7)0.0123 (6)0.0012 (5)0.0026 (5)−0.0010 (5)
C90.0174 (7)0.0180 (7)0.0097 (5)0.0004 (5)0.0004 (5)0.0014 (5)
C100.0169 (7)0.0156 (7)0.0161 (6)−0.0014 (5)0.0009 (5)−0.0024 (5)
C110.0169 (7)0.0185 (7)0.0150 (6)−0.0038 (5)0.0000 (5)0.0031 (5)
C120.0156 (6)0.0167 (7)0.0116 (6)−0.0013 (5)0.0011 (5)−0.0009 (5)
Cl1—O31.4351 (11)C1—C21.514 (2)
Cl1—O21.4391 (12)C1—H1A0.975 (18)
Cl1—O41.4415 (10)C1—H1B0.900 (18)
Cl1—O11.4415 (11)C2—H2A0.9900
Cl2—O51.4359 (11)C2—H2B0.9900
Cl2—O61.4367 (11)C3—C41.5121 (19)
Cl2—O71.4385 (10)C3—H3A0.9900
Cl2—O81.4496 (10)C3—H3B0.9900
Cl3—O111.4374 (11)C4—H4A0.9900
Cl3—O101.4376 (11)C4—H4B0.9900
Cl3—O121.4379 (10)C5—C61.503 (2)
Cl3—O91.4390 (13)C5—H5A0.9900
O13—C21.4301 (17)C5—H5B0.9900
O13—C31.4415 (16)C6—H6A0.9900
O14—C71.4308 (16)C6—H6B0.9900
O14—C61.4342 (17)C7—C81.513 (2)
O15—C111.4333 (17)C7—H7A0.9900
O15—C101.4349 (17)C7—H7B0.9900
N1—C11.4926 (17)C8—H8A0.9900
N1—C41.4951 (17)C8—H8B0.9900
N1—H1C0.877 (9)C9—C101.513 (2)
N1—H1D0.871 (9)C9—H9A0.9900
N2—C51.4943 (18)C9—H9B0.9900
N2—C81.4955 (17)C10—H10A0.9900
N2—H2C0.884 (9)C10—H10B0.9900
N2—H2D0.889 (9)C11—C121.5169 (19)
N3—C121.4903 (17)C11—H11A0.9900
N3—C91.4956 (18)C11—H11B0.9900
N3—H3C0.878 (9)C12—H12A0.9900
N3—H3D0.870 (9)C12—H12B0.9900
O3—Cl1—O2109.78 (7)H3A—C3—H3B108.2
O3—Cl1—O4110.06 (6)N1—C4—C3109.05 (11)
O2—Cl1—O4108.26 (7)N1—C4—H4A109.9
O3—Cl1—O1109.45 (7)C3—C4—H4A109.9
O2—Cl1—O1110.14 (8)N1—C4—H4B109.9
O4—Cl1—O1109.14 (7)C3—C4—H4B109.9
O5—Cl2—O6110.75 (7)H4A—C4—H4B108.3
O5—Cl2—O7110.04 (7)N2—C5—C6109.01 (12)
O6—Cl2—O7109.41 (7)N2—C5—H5A109.9
O5—Cl2—O8108.60 (7)C6—C5—H5A109.9
O6—Cl2—O8108.45 (7)N2—C5—H5B109.9
O7—Cl2—O8109.55 (7)C6—C5—H5B109.9
O11—Cl3—O10109.51 (7)H5A—C5—H5B108.3
O11—Cl3—O12109.94 (7)O14—C6—C5109.94 (12)
O10—Cl3—O12108.83 (7)O14—C6—H6A109.7
O11—Cl3—O9109.91 (8)C5—C6—H6A109.7
O10—Cl3—O9110.39 (9)O14—C6—H6B109.7
O12—Cl3—O9108.24 (7)C5—C6—H6B109.7
C2—O13—C3110.89 (10)H6A—C6—H6B108.2
C7—O14—C6110.37 (10)O14—C7—C8110.61 (11)
C11—O15—C10111.00 (10)O14—C7—H7A109.5
C1—N1—C4110.64 (10)C8—C7—H7A109.5
C1—N1—H1C109.7 (11)O14—C7—H7B109.5
C4—N1—H1C109.6 (11)C8—C7—H7B109.5
C1—N1—H1D109.9 (11)H7A—C7—H7B108.1
C4—N1—H1D109.2 (11)N2—C8—C7109.49 (11)
H1C—N1—H1D107.8 (16)N2—C8—H8A109.8
C5—N2—C8110.58 (10)C7—C8—H8A109.8
C5—N2—H2C110.1 (11)N2—C8—H8B109.8
C8—N2—H2C108.7 (11)C7—C8—H8B109.8
C5—N2—H2D109.2 (11)H8A—C8—H8B108.2
C8—N2—H2D108.7 (11)N3—C9—C10109.02 (11)
H2C—N2—H2D109.6 (15)N3—C9—H9A109.9
C12—N3—C9110.54 (11)C10—C9—H9A109.9
C12—N3—H3C108.1 (11)N3—C9—H9B109.9
C9—N3—H3C108.8 (11)C10—C9—H9B109.9
C12—N3—H3D106.5 (11)H9A—C9—H9B108.3
C9—N3—H3D109.9 (12)O15—C10—C9110.41 (11)
H3C—N3—H3D113.0 (17)O15—C10—H10A109.6
N1—C1—C2108.86 (11)C9—C10—H10A109.6
N1—C1—H1A109.9 (10)O15—C10—H10B109.6
C2—C1—H1A111.7 (11)C9—C10—H10B109.6
N1—C1—H1B109.0 (11)H10A—C10—H10B108.1
C2—C1—H1B110.8 (12)O15—C11—C12110.44 (12)
H1A—C1—H1B106.5 (15)O15—C11—H11A109.6
O13—C2—C1110.88 (11)C12—C11—H11A109.6
O13—C2—H2A109.5O15—C11—H11B109.6
C1—C2—H2A109.5C12—C11—H11B109.6
O13—C2—H2B109.5H11A—C11—H11B108.1
C1—C2—H2B109.5N3—C12—C11108.78 (11)
H2A—C2—H2B108.1N3—C12—H12A109.9
O13—C3—C4110.07 (11)C11—C12—H12A109.9
O13—C3—H3A109.6N3—C12—H12B109.9
C4—C3—H3A109.6C11—C12—H12B109.9
O13—C3—H3B109.6H12A—C12—H12B108.3
C4—C3—H3B109.6
C4—N1—C1—C256.08 (15)C6—O14—C7—C861.45 (14)
C3—O13—C2—C160.92 (15)C5—N2—C8—C754.51 (14)
N1—C1—C2—O13−57.76 (15)O14—C7—C8—N2−56.81 (14)
C2—O13—C3—C4−61.05 (15)C12—N3—C9—C1056.67 (14)
C1—N1—C4—C3−56.79 (15)C11—O15—C10—C960.83 (14)
O13—C3—C4—N158.36 (14)N3—C9—C10—O15−57.92 (14)
C8—N2—C5—C6−56.06 (14)C10—O15—C11—C12−61.04 (14)
C7—O14—C6—C5−62.99 (15)C9—N3—C12—C11−56.71 (15)
N2—C5—C6—O1459.76 (15)O15—C11—C12—N358.34 (15)
D—H···AD—HH···AD···AD—H···A
N1—H1C···O20.877 (9)2.051 (13)2.7872 (16)141.0 (15)
N1—H1D···O15i0.871 (9)2.015 (10)2.8642 (15)164.7 (16)
N2—H2C···O14ii0.884 (9)1.980 (10)2.8441 (14)165.5 (16)
N2—H2D···O80.889 (9)2.020 (11)2.8465 (15)154.1 (15)
N3—H3C···O13i0.878 (9)2.004 (10)2.8690 (15)168.0 (17)
N3—H3D···O90.870 (9)2.039 (13)2.7895 (17)143.9 (16)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1C⋯O20.877 (9)2.051 (13)2.7872 (16)141.0 (15)
N1—H1D⋯O15i0.871 (9)2.015 (10)2.8642 (15)164.7 (16)
N2—H2C⋯O14ii0.884 (9)1.980 (10)2.8441 (14)165.5 (16)
N2—H2D⋯O80.889 (9)2.020 (11)2.8465 (15)154.1 (15)
N3—H3C⋯O13i0.878 (9)2.004 (10)2.8690 (15)168.0 (17)
N3—H3D⋯O90.870 (9)2.039 (13)2.7895 (17)143.9 (16)

Symmetry codes: (i) ; (ii) .

  1 in total

1.  The low-temperature phase of morpholinium tetra-fluoro-borate.

Authors:  Magdalena Owczarek; Przemyslaw Szklarz; Ryszard Jakubas; Tadeusz Lis
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-03-05
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.