Literature DB >> 21201296

Bis[methyl 2-(2-pyridylmethyl-idene)hydrazinecarbodithio-ato]zinc(II).

Xiu-Xia Zhou1, Zheng-Yuan Zhou, Jian-Qiao Chen, Xiao-Ming Lin, Yue-Peng Cai.   

Abstract

In the title compound, [Zn(C(8)n class="Species">H(8)N(3)S(2))(2)], the Zn atom is coordinated by the two ligands in a tridentate manner, via the pyridyl N, the azomethine N and the thiol-ate S atom; the coordination geometry is distorted octa-hedral, with the two ligands in the mer configuration (two S atoms and two pyridyl N atoms are cis with respect to each other and the azomethine N atoms is trans). The mol-ecules are linked by C-H⋯S hydrogen bonds, forming a three-dimensional network structure.

Entities:  

Year:  2008        PMID: 21201296      PMCID: PMC2960303          DOI: 10.1107/S1600536807068493

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see: Akbar Ali et al. (2001 ▶); Casas et al. (2000 ▶); Kasuga et al. (2001 ▶); Tarafder et al. (2003 ▶). For related structures, see: Chen et al. (2003a ▶,b ▶); Lin et al. (2007 ▶).

Experimental

Crystal data

[Zn(C8H8N3S2)2] M = 487.97 Orthorhombic, a = 18.630 (7) Å b = 9.160 (3) Å c = 12.457 (4) Å V = 2125.8 (13) Å3 Z = 4 Mo Kα radiation μ = 1.56 mm−1 T = 293 (2) K 0.25 × 0.22 × 0.17 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.745, T max = 0.777 11500 measured reflections 4584 independent reflections 3257 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.079 S = 1.04 4584 reflections 244 parameters 1 restraint H-atom parameters constrained Δρmax = 0.25 e Å−3 Δρmin = −0.30 e Å−3 Absolute structure: Flack (1983 ▶), 2122 Friedel pairs Flack parameter: 0.013 (12) Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT (Bruker, 1998 ▶); data reduction: SAIn class="Chemical">NT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Bruker, 1998 ▶); software used to prepare material for publication: SHELXTL and local programs. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536807068493/wn2230sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536807068493/wn2230Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Zn(C8H8N3S2)2]F000 = 1000
Mr = 487.97Dx = 1.525 Mg m3
Orthorhombic, Pna21Mo Kα radiation λ = 0.71073 Å
Hall symbol: P2c-2nCell parameters from 5120 reflections
a = 18.630 (7) Åθ = 2.8–26.8º
b = 9.160 (3) ŵ = 1.56 mm1
c = 12.457 (4) ÅT = 293 (2) K
V = 2125.8 (13) Å3Block, colorless
Z = 40.25 × 0.22 × 0.17 mm
Bruker SMART CCD area-detector diffractometer4584 independent reflections
Radiation source: fine-focus sealed tube3257 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.028
T = 293(2) Kθmax = 27.1º
φ and ω scansθmin = 2.2º
Absorption correction: multi-scan(SADABS; Sheldrick, 1996)h = −23→13
Tmin = 0.745, Tmax = 0.777k = −11→11
11500 measured reflectionsl = −15→15
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.034  w = 1/[σ2(Fo2) + (0.0305P)2 + 0.1243P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.079(Δ/σ)max < 0.001
S = 1.04Δρmax = 0.25 e Å3
4584 reflectionsΔρmin = −0.30 e Å3
244 parametersExtinction correction: none
1 restraintAbsolute structure: Flack (1983), 2122 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.013 (12)
Secondary atom site location: difference Fourier map
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Zn10.056290 (19)0.37624 (4)−0.00480 (4)0.05017 (12)
S10.06703 (6)0.16722 (11)−0.12754 (9)0.0649 (3)
S20.16269 (7)0.12965 (14)−0.30631 (10)0.0782 (4)
S30.15974 (5)0.33863 (11)0.11758 (9)0.0641 (3)
S40.16648 (8)0.15980 (16)0.30963 (11)0.0885 (4)
N10.05862 (16)0.6151 (3)0.0248 (2)0.0548 (9)
N20.11660 (15)0.4672 (3)−0.1347 (2)0.0494 (7)
N30.14624 (17)0.3833 (4)−0.2142 (2)0.0587 (8)
H3A0.17570.4172−0.26110.070*
N4−0.06136 (14)0.3920 (3)−0.0321 (2)0.0527 (8)
N50.00813 (14)0.2761 (3)0.1317 (2)0.0468 (7)
N60.04532 (16)0.2141 (3)0.2144 (2)0.0563 (8)
H6A0.02520.16360.26420.068*
C10.0304 (2)0.6883 (5)0.1059 (4)0.0695 (11)
H1A−0.00210.64050.15040.083*
C20.0468 (3)0.8328 (5)0.1276 (4)0.0782 (13)
H2A0.02680.88020.18640.094*
C30.0925 (3)0.9028 (5)0.0616 (4)0.0806 (13)
H3B0.10430.99980.07460.097*
C40.1219 (2)0.8307 (4)−0.0255 (4)0.0708 (12)
H4A0.15320.8780−0.07230.085*
C50.1034 (2)0.6868 (4)−0.0407 (3)0.0519 (9)
C60.13319 (19)0.6008 (4)−0.1282 (3)0.0540 (9)
H6B0.16380.6431−0.17830.065*
C70.1259 (2)0.2492 (5)−0.2121 (3)0.0513 (10)
C80.2232 (3)0.2385 (6)−0.3797 (5)0.123 (2)
H8A0.24610.1801−0.43370.185*
H8B0.25890.2776−0.33200.185*
H8C0.19760.3172−0.41330.185*
C9−0.0957 (2)0.4483 (5)−0.1153 (4)0.0715 (11)
H9A−0.06950.4984−0.16700.086*
C10−0.1684 (2)0.4357 (5)−0.1283 (4)0.0832 (14)
H10A−0.19060.4778−0.18760.100*
C11−0.2080 (2)0.3619 (5)−0.0549 (4)0.0846 (15)
H11A−0.25730.3521−0.06320.102*
C12−0.1735 (2)0.3019 (5)0.0324 (4)0.0729 (12)
H12A−0.19930.25190.08480.087*
C13−0.09986 (19)0.3174 (4)0.0405 (3)0.0529 (9)
C14−0.05961 (18)0.2558 (4)0.1289 (3)0.0543 (9)
H14A−0.08260.20260.18240.065*
C150.1136 (2)0.2385 (4)0.2107 (3)0.0535 (10)
C160.1042 (3)0.0692 (7)0.3960 (4)0.131 (2)
H16A0.12980.02230.45330.197*
H16B0.0781−0.00270.35580.197*
H16C0.07130.13930.42530.197*
U11U22U33U12U13U23
Zn10.0438 (2)0.0553 (2)0.0514 (2)−0.00346 (17)0.0087 (2)0.0044 (2)
S10.0754 (7)0.0579 (6)0.0615 (6)−0.0133 (5)0.0076 (6)−0.0041 (5)
S20.0750 (8)0.0874 (9)0.0721 (7)0.0010 (6)0.0107 (6)−0.0295 (6)
S30.0393 (5)0.0865 (7)0.0665 (6)0.0000 (5)0.0002 (5)−0.0022 (6)
S40.0793 (9)0.0942 (9)0.0921 (9)0.0049 (7)−0.0400 (8)0.0142 (7)
N10.0497 (16)0.0497 (16)0.065 (3)0.0043 (15)0.0092 (15)−0.0022 (14)
N20.0492 (16)0.053 (2)0.0462 (16)−0.0006 (14)0.0097 (14)0.0008 (15)
N30.0558 (19)0.071 (2)0.0496 (18)−0.0080 (16)0.0192 (15)−0.0006 (16)
N40.0441 (16)0.0578 (18)0.056 (2)−0.0011 (14)0.0030 (14)0.0111 (14)
N50.0418 (17)0.0534 (17)0.0451 (15)−0.0013 (13)0.0030 (14)0.0051 (14)
N60.057 (2)0.065 (2)0.0474 (17)−0.0068 (15)−0.0047 (15)0.0106 (15)
C10.066 (3)0.073 (3)0.070 (3)0.007 (2)0.016 (2)−0.002 (2)
C20.097 (3)0.068 (3)0.070 (3)0.021 (2)0.008 (3)−0.011 (2)
C30.101 (4)0.058 (3)0.083 (3)0.007 (3)−0.005 (3)−0.009 (2)
C40.080 (3)0.057 (2)0.076 (4)−0.004 (2)0.002 (2)0.005 (2)
C50.051 (2)0.044 (2)0.060 (2)0.0033 (17)−0.0019 (17)0.0037 (16)
C60.056 (2)0.052 (2)0.055 (2)−0.0081 (17)0.0097 (19)0.0076 (18)
C70.051 (2)0.058 (3)0.045 (2)−0.0007 (19)−0.0046 (16)−0.0083 (18)
C80.119 (4)0.148 (5)0.103 (4)−0.015 (4)0.053 (4)−0.024 (4)
C90.060 (3)0.079 (3)0.076 (3)0.000 (2)−0.003 (2)0.026 (3)
C100.066 (3)0.089 (3)0.095 (3)0.001 (2)−0.026 (3)0.032 (3)
C110.047 (2)0.093 (4)0.114 (4)−0.004 (2)−0.018 (3)0.023 (3)
C120.048 (2)0.090 (3)0.080 (3)−0.019 (2)0.002 (2)0.016 (2)
C130.039 (2)0.060 (2)0.059 (2)0.0024 (17)0.0026 (17)0.0065 (18)
C140.045 (2)0.069 (2)0.049 (2)−0.0080 (17)0.0058 (19)0.0063 (18)
C150.051 (2)0.056 (3)0.054 (2)0.0061 (19)−0.0101 (19)−0.0152 (17)
C160.158 (6)0.146 (5)0.090 (4)−0.045 (4)−0.054 (4)0.052 (4)
Zn1—N52.130 (3)C1—H1A0.9300
Zn1—N22.139 (3)C2—C31.346 (7)
Zn1—N12.219 (3)C2—H2A0.9300
Zn1—N42.223 (3)C3—C41.384 (6)
Zn1—S12.4584 (13)C3—H3B0.9300
Zn1—S32.4814 (13)C4—C51.376 (5)
S1—C71.697 (4)C4—H4A0.9300
S2—C71.744 (4)C5—C61.456 (5)
S2—C81.761 (5)C6—H6B0.9300
S3—C151.710 (4)C8—H8A0.9600
S4—C151.735 (4)C8—H8B0.9600
S4—C161.786 (6)C8—H8C0.9600
N1—C11.321 (5)C9—C101.368 (5)
N1—C51.339 (4)C9—H9A0.9300
N2—C61.264 (4)C10—C111.356 (6)
N2—N31.370 (4)C10—H10A0.9300
N3—C71.286 (5)C11—C121.377 (6)
N3—H3A0.8600C11—H11A0.9300
N4—C91.323 (5)C12—C131.384 (5)
N4—C131.341 (4)C12—H12A0.9300
N5—C141.276 (4)C13—C141.447 (5)
N5—N61.365 (4)C14—H14A0.9300
N6—C151.293 (4)C16—H16A0.9600
N6—H6A0.8600C16—H16B0.9600
C1—C21.385 (6)C16—H16C0.9600
N5—Zn1—N2173.15 (11)C5—C4—C3117.7 (4)
N5—Zn1—N1107.46 (11)C5—C4—H4A121.1
N2—Zn1—N174.43 (11)C3—C4—H4A121.1
N5—Zn1—N474.61 (10)N1—C5—C4122.9 (4)
N2—Zn1—N4112.15 (11)N1—C5—C6115.4 (3)
N1—Zn1—N488.90 (11)C4—C5—C6121.7 (4)
N5—Zn1—S1101.26 (8)N2—C6—C5118.6 (3)
N2—Zn1—S177.89 (8)N2—C6—H6B120.7
N1—Zn1—S1150.43 (8)C5—C6—H6B120.7
N4—Zn1—S192.05 (8)N3—C7—S1128.7 (3)
N5—Zn1—S377.11 (8)N3—C7—S2118.1 (3)
N2—Zn1—S396.37 (9)S1—C7—S2113.2 (2)
N1—Zn1—S391.11 (8)S2—C8—H8A109.5
N4—Zn1—S3150.32 (8)S2—C8—H8B109.5
S1—Zn1—S3102.17 (4)H8A—C8—H8B109.5
C7—S1—Zn195.42 (14)S2—C8—H8C109.5
C7—S2—C8104.2 (2)H8A—C8—H8C109.5
C15—S3—Zn195.79 (13)H8B—C8—H8C109.5
C15—S4—C16104.6 (2)N4—C9—C10122.6 (4)
C1—N1—C5117.7 (3)N4—C9—H9A118.7
C1—N1—Zn1128.3 (3)C10—C9—H9A118.7
C5—N1—Zn1113.2 (2)C11—C10—C9120.0 (4)
C6—N2—N3119.4 (3)C11—C10—H10A120.0
C6—N2—Zn1117.2 (2)C9—C10—H10A120.0
N3—N2—Zn1122.7 (2)C10—C11—C12118.6 (4)
C7—N3—N2113.8 (3)C10—C11—H11A120.7
C7—N3—H3A123.1C12—C11—H11A120.7
N2—N3—H3A123.1C11—C12—C13118.6 (4)
C9—N4—C13117.9 (3)C11—C12—H12A120.7
C9—N4—Zn1128.5 (3)C13—C12—H12A120.7
C13—N4—Zn1113.0 (2)N4—C13—C12122.3 (4)
C14—N5—N6117.5 (3)N4—C13—C14115.8 (3)
C14—N5—Zn1117.2 (2)C12—C13—C14122.0 (4)
N6—N5—Zn1124.6 (2)N5—C14—C13118.5 (3)
C15—N6—N5113.6 (3)N5—C14—H14A120.8
C15—N6—H6A123.2C13—C14—H14A120.8
N5—N6—H6A123.2N6—C15—S3127.7 (3)
N1—C1—C2123.1 (4)N6—C15—S4117.5 (3)
N1—C1—H1A118.5S3—C15—S4114.8 (2)
C2—C1—H1A118.5S4—C16—H16A109.5
C3—C2—C1118.4 (4)S4—C16—H16B109.5
C3—C2—H2A120.8H16A—C16—H16B109.5
C1—C2—H2A120.8S4—C16—H16C109.5
C2—C3—C4120.2 (4)H16A—C16—H16C109.5
C2—C3—H3B119.9H16B—C16—H16C109.5
C4—C3—H3B119.9
D—H···AD—HH···AD···AD—H···A
C2—H2A···Sli0.932.943.715 (3)142
C12—H12A···S3ii0.932.793.526 (4)138
Zn1—N52.130 (3)
Zn1—N22.139 (3)
Zn1—N12.219 (3)
Zn1—N42.223 (3)
Zn1—S12.4584 (13)
Zn1—S32.4814 (13)
N5—Zn1—N2173.15 (11)
N5—Zn1—N1107.46 (11)
N2—Zn1—N174.43 (11)
N5—Zn1—N474.61 (10)
N2—Zn1—N4112.15 (11)
N1—Zn1—N488.90 (11)
N5—Zn1—S1101.26 (8)
N2—Zn1—S177.89 (8)
N1—Zn1—S1150.43 (8)
N4—Zn1—S192.05 (8)
N5—Zn1—S377.11 (8)
N2—Zn1—S396.37 (9)
N1—Zn1—S391.11 (8)
N4—Zn1—S3150.32 (8)
S1—Zn1—S3102.17 (4)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C2—H2A⋯Sli0.932.943.715 (3)142
C12—H12A⋯S3ii0.932.793.526 (4)138

Symmetry codes: (i) ; (ii) .

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