| Literature DB >> 21201296 |
Xiu-Xia Zhou1, Zheng-Yuan Zhou, Jian-Qiao Chen, Xiao-Ming Lin, Yue-Peng Cai.
Abstract
In the title compound, [Zn(C(8)H(8)N(3)S(2))(2)], the Zn atom is coordinated by the two ligands in a tridentate manner, via the pyridyl N, the azomethine N and the thiol-ate S atom; the coordination geometry is distorted octa-hedral, with the two ligands in the mer configuration (two S atoms and two pyridyl N atoms are cis with respect to each other and the azomethine N atoms is trans). The mol-ecules are linked by C-H⋯S hydrogen bonds, forming a three-dimensional network structure.Entities:
Year: 2008 PMID: 21201296 PMCID: PMC2960303 DOI: 10.1107/S1600536807068493
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Zn(C8H8N3S2)2] | |
| Orthorhombic, | Mo |
| Hall symbol: P2c-2n | Cell parameters from 5120 reflections |
| θ = 2.8–26.8º | |
| µ = 1.56 mm−1 | |
| Block, colorless | |
| 0.25 × 0.22 × 0.17 mm |
| Bruker SMART CCD area-detector diffractometer | 4584 independent reflections |
| Radiation source: fine-focus sealed tube | 3257 reflections with |
| Monochromator: graphite | |
| θmax = 27.1º | |
| φ and ω scans | θmin = 2.2º |
| Absorption correction: multi-scan(SADABS; Sheldrick, 1996) | |
| 11500 measured reflections |
| Refinement on | Hydrogen site location: inferred from neighbouring sites |
| Least-squares matrix: full | H-atom parameters constrained |
| | |
| (Δ/σ)max < 0.001 | |
| Δρmax = 0.25 e Å−3 | |
| 4584 reflections | Δρmin = −0.30 e Å−3 |
| 244 parameters | Extinction correction: none |
| 1 restraint | Absolute structure: Flack (1983), 2122 Friedel pairs |
| Primary atom site location: structure-invariant direct methods | Flack parameter: 0.013 (12) |
| Secondary atom site location: difference Fourier map |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Zn1 | 0.056290 (19) | 0.37624 (4) | −0.00480 (4) | 0.05017 (12) | |
| S1 | 0.06703 (6) | 0.16722 (11) | −0.12754 (9) | 0.0649 (3) | |
| S2 | 0.16269 (7) | 0.12965 (14) | −0.30631 (10) | 0.0782 (4) | |
| S3 | 0.15974 (5) | 0.33863 (11) | 0.11758 (9) | 0.0641 (3) | |
| S4 | 0.16648 (8) | 0.15980 (16) | 0.30963 (11) | 0.0885 (4) | |
| N1 | 0.05862 (16) | 0.6151 (3) | 0.0248 (2) | 0.0548 (9) | |
| N2 | 0.11660 (15) | 0.4672 (3) | −0.1347 (2) | 0.0494 (7) | |
| N3 | 0.14624 (17) | 0.3833 (4) | −0.2142 (2) | 0.0587 (8) | |
| H3A | 0.1757 | 0.4172 | −0.2611 | 0.070* | |
| N4 | −0.06136 (14) | 0.3920 (3) | −0.0321 (2) | 0.0527 (8) | |
| N5 | 0.00813 (14) | 0.2761 (3) | 0.1317 (2) | 0.0468 (7) | |
| N6 | 0.04532 (16) | 0.2141 (3) | 0.2144 (2) | 0.0563 (8) | |
| H6A | 0.0252 | 0.1636 | 0.2642 | 0.068* | |
| C1 | 0.0304 (2) | 0.6883 (5) | 0.1059 (4) | 0.0695 (11) | |
| H1A | −0.0021 | 0.6405 | 0.1504 | 0.083* | |
| C2 | 0.0468 (3) | 0.8328 (5) | 0.1276 (4) | 0.0782 (13) | |
| H2A | 0.0268 | 0.8802 | 0.1864 | 0.094* | |
| C3 | 0.0925 (3) | 0.9028 (5) | 0.0616 (4) | 0.0806 (13) | |
| H3B | 0.1043 | 0.9998 | 0.0746 | 0.097* | |
| C4 | 0.1219 (2) | 0.8307 (4) | −0.0255 (4) | 0.0708 (12) | |
| H4A | 0.1532 | 0.8780 | −0.0723 | 0.085* | |
| C5 | 0.1034 (2) | 0.6868 (4) | −0.0407 (3) | 0.0519 (9) | |
| C6 | 0.13319 (19) | 0.6008 (4) | −0.1282 (3) | 0.0540 (9) | |
| H6B | 0.1638 | 0.6431 | −0.1783 | 0.065* | |
| C7 | 0.1259 (2) | 0.2492 (5) | −0.2121 (3) | 0.0513 (10) | |
| C8 | 0.2232 (3) | 0.2385 (6) | −0.3797 (5) | 0.123 (2) | |
| H8A | 0.2461 | 0.1801 | −0.4337 | 0.185* | |
| H8B | 0.2589 | 0.2776 | −0.3320 | 0.185* | |
| H8C | 0.1976 | 0.3172 | −0.4133 | 0.185* | |
| C9 | −0.0957 (2) | 0.4483 (5) | −0.1153 (4) | 0.0715 (11) | |
| H9A | −0.0695 | 0.4984 | −0.1670 | 0.086* | |
| C10 | −0.1684 (2) | 0.4357 (5) | −0.1283 (4) | 0.0832 (14) | |
| H10A | −0.1906 | 0.4778 | −0.1876 | 0.100* | |
| C11 | −0.2080 (2) | 0.3619 (5) | −0.0549 (4) | 0.0846 (15) | |
| H11A | −0.2573 | 0.3521 | −0.0632 | 0.102* | |
| C12 | −0.1735 (2) | 0.3019 (5) | 0.0324 (4) | 0.0729 (12) | |
| H12A | −0.1993 | 0.2519 | 0.0848 | 0.087* | |
| C13 | −0.09986 (19) | 0.3174 (4) | 0.0405 (3) | 0.0529 (9) | |
| C14 | −0.05961 (18) | 0.2558 (4) | 0.1289 (3) | 0.0543 (9) | |
| H14A | −0.0826 | 0.2026 | 0.1824 | 0.065* | |
| C15 | 0.1136 (2) | 0.2385 (4) | 0.2107 (3) | 0.0535 (10) | |
| C16 | 0.1042 (3) | 0.0692 (7) | 0.3960 (4) | 0.131 (2) | |
| H16A | 0.1298 | 0.0223 | 0.4533 | 0.197* | |
| H16B | 0.0781 | −0.0027 | 0.3558 | 0.197* | |
| H16C | 0.0713 | 0.1393 | 0.4253 | 0.197* |
| Zn1 | 0.0438 (2) | 0.0553 (2) | 0.0514 (2) | −0.00346 (17) | 0.0087 (2) | 0.0044 (2) |
| S1 | 0.0754 (7) | 0.0579 (6) | 0.0615 (6) | −0.0133 (5) | 0.0076 (6) | −0.0041 (5) |
| S2 | 0.0750 (8) | 0.0874 (9) | 0.0721 (7) | 0.0010 (6) | 0.0107 (6) | −0.0295 (6) |
| S3 | 0.0393 (5) | 0.0865 (7) | 0.0665 (6) | 0.0000 (5) | 0.0002 (5) | −0.0022 (6) |
| S4 | 0.0793 (9) | 0.0942 (9) | 0.0921 (9) | 0.0049 (7) | −0.0400 (8) | 0.0142 (7) |
| N1 | 0.0497 (16) | 0.0497 (16) | 0.065 (3) | 0.0043 (15) | 0.0092 (15) | −0.0022 (14) |
| N2 | 0.0492 (16) | 0.053 (2) | 0.0462 (16) | −0.0006 (14) | 0.0097 (14) | 0.0008 (15) |
| N3 | 0.0558 (19) | 0.071 (2) | 0.0496 (18) | −0.0080 (16) | 0.0192 (15) | −0.0006 (16) |
| N4 | 0.0441 (16) | 0.0578 (18) | 0.056 (2) | −0.0011 (14) | 0.0030 (14) | 0.0111 (14) |
| N5 | 0.0418 (17) | 0.0534 (17) | 0.0451 (15) | −0.0013 (13) | 0.0030 (14) | 0.0051 (14) |
| N6 | 0.057 (2) | 0.065 (2) | 0.0474 (17) | −0.0068 (15) | −0.0047 (15) | 0.0106 (15) |
| C1 | 0.066 (3) | 0.073 (3) | 0.070 (3) | 0.007 (2) | 0.016 (2) | −0.002 (2) |
| C2 | 0.097 (3) | 0.068 (3) | 0.070 (3) | 0.021 (2) | 0.008 (3) | −0.011 (2) |
| C3 | 0.101 (4) | 0.058 (3) | 0.083 (3) | 0.007 (3) | −0.005 (3) | −0.009 (2) |
| C4 | 0.080 (3) | 0.057 (2) | 0.076 (4) | −0.004 (2) | 0.002 (2) | 0.005 (2) |
| C5 | 0.051 (2) | 0.044 (2) | 0.060 (2) | 0.0033 (17) | −0.0019 (17) | 0.0037 (16) |
| C6 | 0.056 (2) | 0.052 (2) | 0.055 (2) | −0.0081 (17) | 0.0097 (19) | 0.0076 (18) |
| C7 | 0.051 (2) | 0.058 (3) | 0.045 (2) | −0.0007 (19) | −0.0046 (16) | −0.0083 (18) |
| C8 | 0.119 (4) | 0.148 (5) | 0.103 (4) | −0.015 (4) | 0.053 (4) | −0.024 (4) |
| C9 | 0.060 (3) | 0.079 (3) | 0.076 (3) | 0.000 (2) | −0.003 (2) | 0.026 (3) |
| C10 | 0.066 (3) | 0.089 (3) | 0.095 (3) | 0.001 (2) | −0.026 (3) | 0.032 (3) |
| C11 | 0.047 (2) | 0.093 (4) | 0.114 (4) | −0.004 (2) | −0.018 (3) | 0.023 (3) |
| C12 | 0.048 (2) | 0.090 (3) | 0.080 (3) | −0.019 (2) | 0.002 (2) | 0.016 (2) |
| C13 | 0.039 (2) | 0.060 (2) | 0.059 (2) | 0.0024 (17) | 0.0026 (17) | 0.0065 (18) |
| C14 | 0.045 (2) | 0.069 (2) | 0.049 (2) | −0.0080 (17) | 0.0058 (19) | 0.0063 (18) |
| C15 | 0.051 (2) | 0.056 (3) | 0.054 (2) | 0.0061 (19) | −0.0101 (19) | −0.0152 (17) |
| C16 | 0.158 (6) | 0.146 (5) | 0.090 (4) | −0.045 (4) | −0.054 (4) | 0.052 (4) |
| Zn1—N5 | 2.130 (3) | C1—H1A | 0.9300 |
| Zn1—N2 | 2.139 (3) | C2—C3 | 1.346 (7) |
| Zn1—N1 | 2.219 (3) | C2—H2A | 0.9300 |
| Zn1—N4 | 2.223 (3) | C3—C4 | 1.384 (6) |
| Zn1—S1 | 2.4584 (13) | C3—H3B | 0.9300 |
| Zn1—S3 | 2.4814 (13) | C4—C5 | 1.376 (5) |
| S1—C7 | 1.697 (4) | C4—H4A | 0.9300 |
| S2—C7 | 1.744 (4) | C5—C6 | 1.456 (5) |
| S2—C8 | 1.761 (5) | C6—H6B | 0.9300 |
| S3—C15 | 1.710 (4) | C8—H8A | 0.9600 |
| S4—C15 | 1.735 (4) | C8—H8B | 0.9600 |
| S4—C16 | 1.786 (6) | C8—H8C | 0.9600 |
| N1—C1 | 1.321 (5) | C9—C10 | 1.368 (5) |
| N1—C5 | 1.339 (4) | C9—H9A | 0.9300 |
| N2—C6 | 1.264 (4) | C10—C11 | 1.356 (6) |
| N2—N3 | 1.370 (4) | C10—H10A | 0.9300 |
| N3—C7 | 1.286 (5) | C11—C12 | 1.377 (6) |
| N3—H3A | 0.8600 | C11—H11A | 0.9300 |
| N4—C9 | 1.323 (5) | C12—C13 | 1.384 (5) |
| N4—C13 | 1.341 (4) | C12—H12A | 0.9300 |
| N5—C14 | 1.276 (4) | C13—C14 | 1.447 (5) |
| N5—N6 | 1.365 (4) | C14—H14A | 0.9300 |
| N6—C15 | 1.293 (4) | C16—H16A | 0.9600 |
| N6—H6A | 0.8600 | C16—H16B | 0.9600 |
| C1—C2 | 1.385 (6) | C16—H16C | 0.9600 |
| N5—Zn1—N2 | 173.15 (11) | C5—C4—C3 | 117.7 (4) |
| N5—Zn1—N1 | 107.46 (11) | C5—C4—H4A | 121.1 |
| N2—Zn1—N1 | 74.43 (11) | C3—C4—H4A | 121.1 |
| N5—Zn1—N4 | 74.61 (10) | N1—C5—C4 | 122.9 (4) |
| N2—Zn1—N4 | 112.15 (11) | N1—C5—C6 | 115.4 (3) |
| N1—Zn1—N4 | 88.90 (11) | C4—C5—C6 | 121.7 (4) |
| N5—Zn1—S1 | 101.26 (8) | N2—C6—C5 | 118.6 (3) |
| N2—Zn1—S1 | 77.89 (8) | N2—C6—H6B | 120.7 |
| N1—Zn1—S1 | 150.43 (8) | C5—C6—H6B | 120.7 |
| N4—Zn1—S1 | 92.05 (8) | N3—C7—S1 | 128.7 (3) |
| N5—Zn1—S3 | 77.11 (8) | N3—C7—S2 | 118.1 (3) |
| N2—Zn1—S3 | 96.37 (9) | S1—C7—S2 | 113.2 (2) |
| N1—Zn1—S3 | 91.11 (8) | S2—C8—H8A | 109.5 |
| N4—Zn1—S3 | 150.32 (8) | S2—C8—H8B | 109.5 |
| S1—Zn1—S3 | 102.17 (4) | H8A—C8—H8B | 109.5 |
| C7—S1—Zn1 | 95.42 (14) | S2—C8—H8C | 109.5 |
| C7—S2—C8 | 104.2 (2) | H8A—C8—H8C | 109.5 |
| C15—S3—Zn1 | 95.79 (13) | H8B—C8—H8C | 109.5 |
| C15—S4—C16 | 104.6 (2) | N4—C9—C10 | 122.6 (4) |
| C1—N1—C5 | 117.7 (3) | N4—C9—H9A | 118.7 |
| C1—N1—Zn1 | 128.3 (3) | C10—C9—H9A | 118.7 |
| C5—N1—Zn1 | 113.2 (2) | C11—C10—C9 | 120.0 (4) |
| C6—N2—N3 | 119.4 (3) | C11—C10—H10A | 120.0 |
| C6—N2—Zn1 | 117.2 (2) | C9—C10—H10A | 120.0 |
| N3—N2—Zn1 | 122.7 (2) | C10—C11—C12 | 118.6 (4) |
| C7—N3—N2 | 113.8 (3) | C10—C11—H11A | 120.7 |
| C7—N3—H3A | 123.1 | C12—C11—H11A | 120.7 |
| N2—N3—H3A | 123.1 | C11—C12—C13 | 118.6 (4) |
| C9—N4—C13 | 117.9 (3) | C11—C12—H12A | 120.7 |
| C9—N4—Zn1 | 128.5 (3) | C13—C12—H12A | 120.7 |
| C13—N4—Zn1 | 113.0 (2) | N4—C13—C12 | 122.3 (4) |
| C14—N5—N6 | 117.5 (3) | N4—C13—C14 | 115.8 (3) |
| C14—N5—Zn1 | 117.2 (2) | C12—C13—C14 | 122.0 (4) |
| N6—N5—Zn1 | 124.6 (2) | N5—C14—C13 | 118.5 (3) |
| C15—N6—N5 | 113.6 (3) | N5—C14—H14A | 120.8 |
| C15—N6—H6A | 123.2 | C13—C14—H14A | 120.8 |
| N5—N6—H6A | 123.2 | N6—C15—S3 | 127.7 (3) |
| N1—C1—C2 | 123.1 (4) | N6—C15—S4 | 117.5 (3) |
| N1—C1—H1A | 118.5 | S3—C15—S4 | 114.8 (2) |
| C2—C1—H1A | 118.5 | S4—C16—H16A | 109.5 |
| C3—C2—C1 | 118.4 (4) | S4—C16—H16B | 109.5 |
| C3—C2—H2A | 120.8 | H16A—C16—H16B | 109.5 |
| C1—C2—H2A | 120.8 | S4—C16—H16C | 109.5 |
| C2—C3—C4 | 120.2 (4) | H16A—C16—H16C | 109.5 |
| C2—C3—H3B | 119.9 | H16B—C16—H16C | 109.5 |
| C4—C3—H3B | 119.9 |
| H··· | ||||
| C2—H2A···Sli | 0.93 | 2.94 | 3.715 (3) | 142 |
| C12—H12A···S3ii | 0.93 | 2.79 | 3.526 (4) | 138 |
| Zn1—N5 | 2.130 (3) |
| Zn1—N2 | 2.139 (3) |
| Zn1—N1 | 2.219 (3) |
| Zn1—N4 | 2.223 (3) |
| Zn1—S1 | 2.4584 (13) |
| Zn1—S3 | 2.4814 (13) |
| N5—Zn1—N2 | 173.15 (11) |
| N5—Zn1—N1 | 107.46 (11) |
| N2—Zn1—N1 | 74.43 (11) |
| N5—Zn1—N4 | 74.61 (10) |
| N2—Zn1—N4 | 112.15 (11) |
| N1—Zn1—N4 | 88.90 (11) |
| N5—Zn1—S1 | 101.26 (8) |
| N2—Zn1—S1 | 77.89 (8) |
| N1—Zn1—S1 | 150.43 (8) |
| N4—Zn1—S1 | 92.05 (8) |
| N5—Zn1—S3 | 77.11 (8) |
| N2—Zn1—S3 | 96.37 (9) |
| N1—Zn1—S3 | 91.11 (8) |
| N4—Zn1—S3 | 150.32 (8) |
| S1—Zn1—S3 | 102.17 (4) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| C2—H2 | 0.93 | 2.94 | 3.715 (3) | 142 |
| C12—H12 | 0.93 | 2.79 | 3.526 (4) | 138 |
Symmetry codes: (i) ; (ii) .