Literature DB >> 21201251

Diaqua-bis(9-oxo-4,5-diaza-fluoren-3-olato-κN,O)cadmium(II).

Ya-Hui Zhao1, Xing Yuan, Wei-Chao Qin, Lian-Xi Sheng, Yun-Zheng Ding.   

Abstract

The title compound, [Cd(C(11)H(5)N(2)O(2))(2)(H(2)O)(2)], is a mononuclear complex consisting of a Cd(II) atom, two 3-hydr-oxy-4,5-diaza-fluoren-9-one ligands and two coordinated water mol-ecules. The Cd(II) atom, lying on a twofold axis, displays a distorted octa-hedral coordintion. Adjacent mol-ecules are linked by O-H⋯O hydrogen bonds and π-π inter-actions [centroid-centroid distance = 3.84 (1) Å], leading to a one-dimensional chain. Weak C-H⋯O hydrogen bonds connect the chains into a two-dimensional supra-molecular structure.

Entities:  

Year:  2008        PMID: 21201251      PMCID: PMC2960196          DOI: 10.1107/S1600536807067323

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Li et al. (2006 ▶); Rillema et al. (2007 ▶); Tershansy et al. (2006 ▶); Zhao et al. (2006 ▶).

Experimental

Crystal data

[Cd(C11H5N2O2)2(H2O)2] M = 542.77 Monoclinic, a = 28.190 (5) Å b = 5.572 (4) Å c = 13.933 (5) Å β = 110.622 (5)° V = 2048.3 (17) Å3 Z = 4 Mo Kα radiation μ = 1.12 mm−1 T = 293 (2) K 0.26 × 0.21 × 0.17 mm

Data collection

Rigaku R-AXIS RAPID diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.760, T max = 0.833 5972 measured reflections 2406 independent reflections 1965 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.029 wR(F 2) = 0.082 S = 1.02 2406 reflections 158 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.62 e Å−3 Δρmin = −0.36 e Å−3 Data collection: PROCESS-AUTO (Rigaku, 1998 ▶); cell refinement: PROCESS-AUTO; data reduction: PROCESS-AUTO; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997 ▶); molecular graphics: SHELXTL-Plus (Siemens, 1990 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536807067323/hy2109sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536807067323/hy2109Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cd(C11H5N2O2)2(H2O)2]F000 = 1080
Mr = 542.77Dx = 1.760 Mg m3
Monoclinic, C2/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 4465 reflections
a = 28.190 (5) Åθ = 3.0–28.3º
b = 5.572 (4) ŵ = 1.12 mm1
c = 13.933 (5) ÅT = 293 (2) K
β = 110.622 (5)ºBlock, colorless
V = 2048.3 (17) Å30.26 × 0.21 × 0.17 mm
Z = 4
Rigaku R-AXIS RAPID diffractometer2406 independent reflections
Radiation source: rotation anode1965 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.021
T = 293(2) Kθmax = 28.3º
ω scansθmin = 3.0º
Absorption correction: multi-scan(ABSCOR; Higashi, 1995)h = −26→37
Tmin = 0.760, Tmax = 0.833k = −7→7
5972 measured reflectionsl = −18→12
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.029H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.082  w = 1/[σ2(Fo2) + (0.0433P)2 + 1.5483P] where P = (Fo2 + 2Fc2)/3
S = 1.02(Δ/σ)max < 0.001
2406 reflectionsΔρmax = 0.62 e Å3
158 parametersΔρmin = −0.36 e Å3
2 restraintsExtinction correction: none
Primary atom site location: structure-invariant direct methods
xyzUiso*/Ueq
Cd11.00000.24267 (5)0.25000.04153 (11)
N10.91692 (7)0.1412 (4)0.15373 (15)0.0337 (4)
N20.90481 (8)0.5376 (4)−0.00770 (16)0.0400 (5)
O20.95401 (7)−0.0756 (3)0.29552 (14)0.0455 (4)
O30.75172 (7)0.0883 (4)−0.09790 (15)0.0553 (5)
C10.91486 (9)−0.0461 (4)0.21600 (18)0.0358 (5)
C20.87029 (11)−0.1903 (5)0.1904 (2)0.0430 (6)
H20.8695−0.32030.23170.052*
C30.82874 (10)−0.1395 (5)0.1061 (2)0.0423 (6)
H30.7995−0.23220.08970.051*
C40.83130 (9)0.0555 (5)0.04508 (18)0.0366 (5)
C50.79449 (9)0.1567 (5)−0.0489 (2)0.0404 (6)
C60.82108 (9)0.3654 (5)−0.07684 (18)0.0377 (5)
C70.80569 (10)0.5278 (5)−0.1560 (2)0.0470 (6)
H70.77310.5249−0.20450.056*
C80.84113 (12)0.6963 (5)−0.1601 (2)0.0501 (7)
H80.83250.8102−0.21220.060*
C90.88918 (12)0.6950 (5)−0.0868 (2)0.0460 (7)
H90.91220.8091−0.09200.055*
C100.87021 (9)0.3786 (4)−0.00494 (17)0.0334 (5)
C110.87612 (9)0.1865 (4)0.07194 (19)0.0327 (5)
O10.99406 (8)0.4960 (4)0.36946 (16)0.0505 (5)
H1A1.0223 (8)0.519 (6)0.412 (2)0.065 (10)*
H1B0.9809 (13)0.630 (4)0.353 (3)0.067 (11)*
U11U22U33U12U13U23
Cd10.02980 (15)0.03837 (17)0.04841 (18)0.0000.00383 (11)0.000
N10.0281 (10)0.0314 (10)0.0377 (11)−0.0028 (8)0.0066 (8)0.0013 (9)
N20.0387 (11)0.0401 (12)0.0400 (11)−0.0032 (9)0.0125 (9)0.0036 (9)
O20.0427 (10)0.0407 (10)0.0454 (10)0.0028 (8)0.0058 (8)0.0076 (8)
O30.0343 (10)0.0707 (14)0.0495 (11)−0.0142 (9)0.0005 (8)−0.0081 (10)
C10.0369 (12)0.0317 (12)0.0382 (13)0.0023 (10)0.0124 (10)0.0002 (10)
C20.0489 (16)0.0348 (13)0.0490 (15)−0.0056 (11)0.0218 (13)0.0017 (11)
C30.0385 (14)0.0400 (14)0.0494 (15)−0.0123 (11)0.0168 (12)−0.0068 (12)
C40.0296 (11)0.0403 (13)0.0385 (13)−0.0051 (10)0.0103 (10)−0.0061 (11)
C50.0331 (13)0.0464 (14)0.0396 (13)−0.0031 (11)0.0100 (11)−0.0089 (12)
C60.0317 (12)0.0444 (15)0.0345 (12)−0.0003 (10)0.0085 (10)−0.0048 (11)
C70.0415 (14)0.0581 (17)0.0355 (13)0.0076 (12)0.0062 (11)0.0035 (12)
C80.0597 (18)0.0509 (16)0.0383 (14)0.0123 (14)0.0154 (13)0.0101 (12)
C90.0500 (16)0.0423 (15)0.0499 (16)0.0011 (12)0.0227 (13)0.0083 (12)
C100.0318 (11)0.0350 (13)0.0312 (11)−0.0004 (9)0.0086 (9)−0.0022 (10)
C110.0296 (12)0.0320 (12)0.0353 (12)−0.0025 (9)0.0097 (10)−0.0030 (10)
O10.0448 (12)0.0426 (11)0.0532 (12)0.0076 (9)0.0039 (10)−0.0025 (10)
Cd1—O12.233 (2)C3—C41.397 (4)
Cd1—O1i2.233 (2)C3—H30.9300
Cd1—N1i2.3217 (19)C4—C111.391 (3)
Cd1—N12.3217 (19)C4—C51.468 (4)
Cd1—O22.410 (2)C5—C61.507 (4)
Cd1—O2i2.410 (2)C6—C71.374 (4)
N1—C111.327 (3)C6—C101.396 (3)
N1—C11.371 (3)C7—C81.386 (4)
N2—C101.328 (3)C7—H70.9300
N2—C91.355 (3)C8—C91.380 (4)
O2—C11.269 (3)C8—H80.9300
O3—C51.219 (3)C9—H90.9300
C1—C21.427 (4)C10—C111.482 (4)
C2—C31.365 (4)O1—H1A0.817 (18)
C2—H20.9300O1—H1B0.832 (19)
O1—Cd1—O1i101.59 (13)C4—C3—H3120.9
O1—Cd1—N1i92.77 (7)C11—C4—C3118.8 (2)
O1i—Cd1—N1i105.03 (8)C11—C4—C5109.1 (2)
O1—Cd1—N1105.03 (8)C3—C4—C5132.1 (2)
O1i—Cd1—N192.77 (7)O3—C5—C4128.9 (3)
N1i—Cd1—N1151.82 (11)O3—C5—C6125.5 (3)
O1—Cd1—O294.62 (9)C4—C5—C6105.5 (2)
O1i—Cd1—O2148.19 (7)C7—C6—C10119.6 (2)
N1i—Cd1—O2101.27 (7)C7—C6—C5132.1 (2)
N1—Cd1—O256.38 (7)C10—C6—C5108.3 (2)
O1—Cd1—O2i148.19 (7)C6—C7—C8116.8 (2)
O1i—Cd1—O2i94.62 (9)C6—C7—H7121.6
N1i—Cd1—O2i56.38 (7)C8—C7—H7121.6
N1—Cd1—O2i101.27 (7)C9—C8—C7120.0 (3)
O2—Cd1—O2i85.23 (11)C9—C8—H8120.0
C11—N1—C1118.1 (2)C7—C8—H8120.0
C11—N1—Cd1147.41 (17)N2—C9—C8124.0 (3)
C1—N1—Cd194.51 (14)N2—C9—H9118.0
C10—N2—C9115.1 (2)C8—C9—H9118.0
C1—O2—Cd193.31 (15)N2—C10—C6124.6 (2)
O2—C1—N1115.7 (2)N2—C10—C11127.3 (2)
O2—C1—C2124.3 (2)C6—C10—C11108.1 (2)
N1—C1—C2120.0 (2)N1—C11—C4124.2 (2)
C3—C2—C1120.8 (3)N1—C11—C10126.9 (2)
C3—C2—H2119.6C4—C11—C10108.9 (2)
C1—C2—H2119.6Cd1—O1—H1A109 (2)
C2—C3—C4118.2 (2)Cd1—O1—H1B120 (2)
C2—C3—H3120.9H1A—O1—H1B107 (3)
O1—Cd1—N1—C1193.5 (3)C3—C4—C5—C6−179.4 (3)
O1i—Cd1—N1—C11−9.3 (3)O3—C5—C6—C72.3 (5)
N1i—Cd1—N1—C11−139.1 (3)C4—C5—C6—C7−179.5 (3)
O2—Cd1—N1—C11179.0 (3)O3—C5—C6—C10−176.9 (3)
O2i—Cd1—N1—C11−104.6 (3)C4—C5—C6—C101.4 (3)
O1—Cd1—N1—C1−87.51 (16)C10—C6—C7—C80.9 (4)
O1i—Cd1—N1—C1169.70 (14)C5—C6—C7—C8−178.2 (3)
N1i—Cd1—N1—C139.89 (13)C6—C7—C8—C90.1 (4)
O2—Cd1—N1—C1−2.01 (13)C10—N2—C9—C80.3 (4)
O2i—Cd1—N1—C174.44 (15)C7—C8—C9—N2−0.7 (5)
O1—Cd1—O2—C1107.16 (15)C9—N2—C10—C60.7 (4)
O1i—Cd1—O2—C1−13.7 (2)C9—N2—C10—C11−179.8 (2)
N1i—Cd1—O2—C1−159.08 (14)C7—C6—C10—N2−1.3 (4)
N1—Cd1—O2—C12.17 (14)C5—C6—C10—N2178.0 (2)
O2i—Cd1—O2—C1−104.75 (16)C7—C6—C10—C11179.0 (2)
Cd1—O2—C1—N1−3.4 (2)C5—C6—C10—C11−1.7 (3)
Cd1—O2—C1—C2177.7 (2)C1—N1—C11—C4−0.2 (4)
C11—N1—C1—O2−177.1 (2)Cd1—N1—C11—C4178.7 (2)
Cd1—N1—C1—O23.5 (2)C1—N1—C11—C10−180.0 (2)
C11—N1—C1—C21.9 (3)Cd1—N1—C11—C10−1.1 (5)
Cd1—N1—C1—C2−177.5 (2)C3—C4—C11—N1−1.3 (4)
O2—C1—C2—C3176.7 (2)C5—C4—C11—N1179.7 (2)
N1—C1—C2—C3−2.2 (4)C3—C4—C11—C10178.6 (2)
C1—C2—C3—C40.7 (4)C5—C4—C11—C10−0.5 (3)
C2—C3—C4—C110.9 (4)N2—C10—C11—N11.6 (4)
C2—C3—C4—C5179.7 (3)C6—C10—C11—N1−178.8 (2)
C11—C4—C5—O3177.7 (3)N2—C10—C11—C4−178.3 (2)
C3—C4—C5—O3−1.2 (5)C6—C10—C11—C41.4 (3)
C11—C4—C5—C6−0.5 (3)
D—H···AD—HH···AD···AD—H···A
O1—H1A···N2i0.82 (2)2.02 (2)2.832 (3)172 (3)
O1—H1B···O2ii0.83 (2)1.86 (2)2.686 (3)170 (4)
C3—H3···O3iii0.932.483.351 (5)156
Cd1—O12.233 (2)
Cd1—N12.3217 (19)
Cd1—O22.410 (2)
O1—Cd1—O1i101.59 (13)
O1—Cd1—N1i92.77 (7)
O1—Cd1—N1105.03 (8)
N1i—Cd1—N1151.82 (11)
O1—Cd1—O294.62 (9)
O1i—Cd1—O2148.19 (7)
N1i—Cd1—O2101.27 (7)
N1—Cd1—O256.38 (7)
O2—Cd1—O2i85.23 (11)

Symmetry code: (i) .

Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1A⋯N2i0.82 (2)2.02 (2)2.832 (3)172 (3)
O1—H1B⋯O2ii0.83 (2)1.86 (2)2.686 (3)170 (4)
C3—H3⋯O3iii0.932.483.351 (5)156

Symmetry codes: (i) ; (ii) ; (iii) .

  2 in total

1.  Tetrakis[2-(2-pyridyl)pyridinium] tetra-mu3-iodo-hexa-mu2-iodo-dodecaiodohexabismuthate and bis[tris(2,2'-bipyridine)ruthenium(II)] di-mu4-iodo-octa-mu2-iodo-dodecaiodohexabismuthate.

Authors:  Andrea M Goforth; Meredith A Tershansy; Mark D Smith; LeRoy Peterson; Hans-Conrad zur Loye
Journal:  Acta Crystallogr C       Date:  2006-08-11       Impact factor: 1.172

2.  Diaquabis[2'-(4,5-diazafluoren-9-ylidene)picolinohydrazidato-kappa2N,O]zinc(II) tetrahydrate: a metal-water chain complex containing cyclic water hexamers.

Authors:  Zhi Feng Li; Chun Xiang Wang; Chen Xia Du
Journal:  Acta Crystallogr C       Date:  2006-09-21       Impact factor: 1.172

  2 in total

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