Literature DB >> 21201222

2-Amino-5-(1H-tetra-zol-5-yl)pyridin-1-ium nitrate.

Jing Dai1, Xiao-Chun Wen.   

Abstract

In the cation of the title compound, C(6)H(7)N(6) (+)·NO(3) (-), the pyridine and tetra-zole rings are essentially coplanar, exhibiting a dihedral angle of 6.30 (6)°. In the crystal structure, N-H⋯O, N-H⋯N, C-H⋯O and C-H⋯N hydrogen bonds form a three-dimensional network.

Entities:  

Year:  2008        PMID: 21201222      PMCID: PMC2959428          DOI: 10.1107/S1600536808030791

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background on the chemistry of tetra­zole derivatives, see: Dunica et al. (1991 ▶); Wittenberger & Donner (1993 ▶); Zou et al. (2007 ▶); Xiong et al. (2002 ▶). For the crystal structures of related compounds, see: Dai & Fu (2008 ▶); Wang et al. (2005 ▶).

Experimental

Crystal data

C6H7N6 +·NO3 M = 225.19 Monoclinic, a = 8.3797 (17) Å b = 6.9314 (14) Å c = 15.881 (3) Å β = 94.31 (3)° V = 919.8 (3) Å3 Z = 4 Mo Kα radiation μ = 0.13 mm−1 T = 298 (2) K 0.30 × 0.22 × 0.20 mm

Data collection

Rigaku Mercury2 diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2005 ▶) T min = 0.916, T max = 0.970 8766 measured reflections 2023 independent reflections 1520 reflections with I > 2σ(I) R int = 0.041

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.120 S = 1.07 2023 reflections 173 parameters All H-atom parameters refined Δρmax = 0.15 e Å−3 Δρmin = −0.18 e Å−3 Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL/PC (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL/PC. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808030791/rz2247sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808030791/rz2247Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H7N6+·NO3F(000) = 464
Mr = 225.19Dx = 1.626 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1772 reflections
a = 8.3797 (17) Åθ = 2.4–27.1°
b = 6.9314 (14) ŵ = 0.13 mm1
c = 15.881 (3) ÅT = 298 K
β = 94.31 (3)°Block, colourless
V = 919.8 (3) Å30.30 × 0.22 × 0.20 mm
Z = 4
Rigaku Mercury2 (2x2 bin mode) diffractometer2023 independent reflections
Radiation source: fine-focus sealed tube1520 reflections with I > 2σ(I)
graphiteRint = 0.041
Detector resolution: 13.6612 pixels mm-1θmax = 27.1°, θmin = 3.2°
ω scansh = −10→10
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005)k = −8→8
Tmin = 0.916, Tmax = 0.970l = −20→20
8766 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.049Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.120All H-atom parameters refined
S = 1.07w = 1/[σ2(Fo2) + (0.0527P)2 + 0.2064P] where P = (Fo2 + 2Fc2)/3
2023 reflections(Δ/σ)max < 0.001
173 parametersΔρmax = 0.15 e Å3
0 restraintsΔρmin = −0.18 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.49052 (18)0.0891 (2)0.58329 (9)0.0552 (4)
O20.3288 (2)0.0420 (2)0.68089 (9)0.0632 (5)
O30.46287 (18)0.3054 (2)0.67890 (10)0.0588 (4)
N70.42643 (19)0.1424 (2)0.64808 (10)0.0406 (4)
N10.2311 (2)0.0535 (2)0.27752 (10)0.0416 (4)
C20.2037 (2)0.2485 (3)0.40803 (11)0.0359 (4)
C50.2593 (2)0.5628 (3)0.51712 (11)0.0401 (4)
N50.3153 (2)0.5556 (2)0.43967 (10)0.0427 (4)
C40.1695 (2)0.4035 (3)0.54193 (12)0.0411 (5)
C60.1714 (2)0.0831 (3)0.35207 (11)0.0367 (4)
N40.0781 (2)−0.0636 (3)0.36762 (11)0.0526 (5)
N60.2911 (3)0.7171 (3)0.56527 (13)0.0550 (5)
C30.1443 (2)0.2500 (3)0.48954 (12)0.0399 (4)
N20.1724 (2)−0.1144 (2)0.24520 (10)0.0497 (5)
C10.2875 (2)0.4049 (3)0.38512 (12)0.0414 (5)
N30.0808 (2)−0.1835 (3)0.29971 (11)0.0577 (5)
H6A0.345 (3)0.815 (4)0.5462 (15)0.066 (8)*
H6B0.260 (4)0.723 (4)0.618 (2)0.092 (10)*
H1A0.306 (3)0.126 (3)0.2484 (15)0.066 (7)*
H40.132 (2)0.408 (3)0.5949 (13)0.045 (5)*
H30.085 (3)0.143 (3)0.5074 (13)0.052 (6)*
H10.325 (3)0.423 (3)0.3298 (14)0.056 (6)*
H50.370 (3)0.658 (3)0.4211 (14)0.061 (7)*
U11U22U33U12U13U23
O10.0669 (10)0.0599 (10)0.0416 (8)0.0075 (8)0.0238 (7)−0.0058 (7)
O20.0879 (12)0.0556 (9)0.0497 (9)−0.0239 (9)0.0292 (9)−0.0047 (7)
O30.0629 (10)0.0531 (9)0.0633 (10)−0.0168 (8)0.0236 (8)−0.0186 (7)
N70.0451 (9)0.0430 (9)0.0345 (8)0.0031 (7)0.0084 (7)−0.0002 (7)
N10.0519 (10)0.0426 (9)0.0314 (8)−0.0025 (8)0.0094 (7)0.0003 (7)
C20.0373 (10)0.0387 (10)0.0321 (9)−0.0009 (8)0.0055 (7)0.0016 (8)
C50.0445 (10)0.0413 (11)0.0344 (9)0.0030 (8)0.0015 (8)−0.0005 (8)
N50.0499 (10)0.0397 (9)0.0391 (9)−0.0064 (8)0.0081 (8)0.0028 (7)
C40.0457 (11)0.0481 (11)0.0302 (9)−0.0006 (9)0.0077 (8)0.0010 (8)
C60.0395 (10)0.0406 (10)0.0306 (9)−0.0012 (8)0.0063 (8)0.0029 (7)
N40.0623 (11)0.0533 (11)0.0440 (10)−0.0183 (9)0.0154 (9)−0.0049 (8)
N60.0739 (14)0.0439 (11)0.0475 (11)−0.0070 (10)0.0060 (10)−0.0057 (9)
C30.0414 (10)0.0445 (11)0.0344 (10)−0.0052 (9)0.0076 (8)0.0037 (8)
N20.0650 (11)0.0454 (10)0.0392 (9)−0.0052 (9)0.0077 (8)−0.0030 (8)
C10.0469 (11)0.0453 (11)0.0331 (10)−0.0040 (9)0.0101 (8)0.0021 (8)
N30.0750 (13)0.0515 (11)0.0475 (10)−0.0159 (10)0.0118 (9)−0.0056 (8)
O1—N71.2517 (19)N5—C11.366 (2)
O2—N71.221 (2)N5—H50.91 (2)
O3—N71.260 (2)C4—C31.358 (3)
N1—C61.336 (2)C4—H40.92 (2)
N1—N21.350 (2)C6—N41.317 (2)
N1—H1A0.95 (2)N4—N31.363 (2)
C2—C11.356 (3)N6—H6A0.88 (3)
C2—C31.422 (2)N6—H6B0.90 (3)
C2—C61.463 (3)C3—H30.95 (2)
C5—N61.330 (3)N2—N31.292 (2)
C5—N51.350 (2)C1—H10.96 (2)
C5—C41.409 (3)
O2—N7—O1121.71 (17)C5—C4—H4117.3 (12)
O2—N7—O3119.76 (16)N4—C6—N1108.35 (17)
O1—N7—O3118.53 (16)N4—C6—C2125.21 (16)
C6—N1—N2108.63 (16)N1—C6—C2126.44 (17)
C6—N1—H1A131.0 (14)C6—N4—N3106.09 (16)
N2—N1—H1A120.3 (14)C5—N6—H6A120.5 (16)
C1—C2—C3117.54 (18)C5—N6—H6B120.9 (19)
C1—C2—C6122.64 (16)H6A—N6—H6B119 (2)
C3—C2—C6119.82 (17)C4—C3—C2120.98 (18)
N6—C5—N5119.03 (19)C4—C3—H3119.4 (13)
N6—C5—C4123.88 (19)C2—C3—H3119.6 (13)
N5—C5—C4117.09 (17)N3—N2—N1106.44 (16)
C5—N5—C1123.48 (17)C2—C1—N5120.56 (17)
C5—N5—H5119.1 (15)C2—C1—H1123.9 (13)
C1—N5—H5117.4 (15)N5—C1—H1115.4 (13)
C3—C4—C5120.32 (18)N2—N3—N4110.49 (17)
C3—C4—H4122.4 (13)
N6—C5—N5—C1−179.14 (19)C2—C6—N4—N3179.73 (19)
C4—C5—N5—C10.9 (3)C5—C4—C3—C2−1.7 (3)
N6—C5—C4—C3−179.0 (2)C1—C2—C3—C40.6 (3)
N5—C5—C4—C31.0 (3)C6—C2—C3—C4−178.50 (18)
N2—N1—C6—N40.7 (2)C6—N1—N2—N3−0.4 (2)
N2—N1—C6—C2−179.74 (18)C3—C2—C1—N51.2 (3)
C1—C2—C6—N4−173.07 (19)C6—C2—C1—N5−179.71 (18)
C3—C2—C6—N46.0 (3)C5—N5—C1—C2−2.0 (3)
C1—C2—C6—N17.5 (3)N1—N2—N3—N40.0 (2)
C3—C2—C6—N1−173.47 (18)C6—N4—N3—N20.5 (2)
N1—C6—N4—N3−0.7 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O2i0.95 (2)2.55 (2)3.328 (2)138.7 (18)
N1—H1A···O3i0.95 (2)1.84 (3)2.764 (2)163 (2)
N5—H5···O1ii0.91 (2)2.11 (2)2.989 (2)163 (2)
N5—H5···O3ii0.91 (2)2.21 (2)2.908 (2)133.3 (19)
N6—H6A···O1iii0.88 (3)2.31 (3)3.074 (3)145 (2)
N6—H6B···O2iii0.90 (3)2.48 (3)2.908 (2)110 (2)
N6—H6B···N2iv0.90 (3)2.32 (3)3.176 (3)158 (3)
C1—H1···O3ii0.96 (2)2.60 (2)3.124 (2)114.4 (16)
C1—H1···O2i0.96 (2)2.38 (2)3.308 (2)161.5 (18)
C3—H3···N4v0.95 (2)2.55 (2)3.305 (3)136.3 (16)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯O2i0.95 (2)2.55 (2)3.328 (2)138.7 (18)
N1—H1A⋯O3i0.95 (2)1.84 (3)2.764 (2)163 (2)
N5—H5⋯O1ii0.91 (2)2.11 (2)2.989 (2)163 (2)
N5—H5⋯O3ii0.91 (2)2.21 (2)2.908 (2)133.3 (19)
N6—H6A⋯O1iii0.88 (3)2.31 (3)3.074 (3)145 (2)
N6—H6B⋯O2iii0.90 (3)2.48 (3)2.908 (2)110 (2)
N6—H6B⋯N2iv0.90 (3)2.32 (3)3.176 (3)158 (3)
C1—H1⋯O3ii0.96 (2)2.60 (2)3.124 (2)114.4 (16)
C1—H1⋯O2i0.96 (2)2.38 (2)3.308 (2)161.5 (18)
C3—H3⋯N4v0.95 (2)2.55 (2)3.305 (3)136.3 (16)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

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