Literature DB >> 21201214

1,3-Bis(3-phenyl-prop-yl)benzimidazolium bromide monohydrate.

Mehmet Akkurt, Selvi Karaca, Ulkü Yılmaz, Hasan Küçükbay, Orhan Büyükgüngör.   

Abstract

In the title compound, C(25)H(27)N(2) (+)·Br(-)·H(2)O, the benzimidazole unit is essentially planar, with a maximum deviation of 0.020 (6) Å. The benzimidazole unit makes dihedral angles of 83.6 (3) and 81.0 (3)° with the two terminal phenyl rings. The dihedral angle between the phenyl rings is 58.5 (4)°. In the crystal structure, there are C-H⋯O hydrogen bonds, a C-H⋯π inter-action between a phenyl H atom and the phenyl ring of a neighbouring mol-ecule, and a π-π inter-action [3.512 (3) Å] between the centroids of the five-membered ring and the benzene ring of the benzimidazole unit of an adjacent mol-ecule.

Entities:  

Year:  2008        PMID: 21201214      PMCID: PMC2959260          DOI: 10.1107/S1600536808030432

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see: Sakai et al. (1989 ▶); Küçükbay et al. (2001 ▶, 2003 ▶, 2004 ▶). For a similar structure, see: Akkurt et al. (2005 ▶). For related structures, see: Akkurt et al. (2004 ▶, 2007 ▶); Karaca et al. (2005 ▶); Pınar et al. (2006 ▶); Yıldırım et al. (2005 ▶).

Experimental

Crystal data

C25H27N2Br−·H2O M = 453.40 Monoclinic, a = 14.1933 (8) Å b = 11.4594 (3) Å c = 18.3014 (10) Å β = 128.916 (3)° V = 2316.1 (2) Å3 Z = 4 Mo Kα radiation μ = 1.79 mm−1 T = 295 (2) K 0.71 × 0.63 × 0.54 mm

Data collection

Stoe IPDS II diffractometer Absorption correction: integration (; Stoe & Cie, 2002 ▶) T min = 0.363, T max = 0.444 18735 measured reflections 5283 independent reflections 2688 reflections with I > 2σ(I) R int = 0.071

Refinement

R[F 2 > 2σ(F 2)] = 0.065 wR(F 2) = 0.172 S = 0.99 5283 reflections 268 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.47 e Å−3 Δρmin = −0.23 e Å−3 Data collection: X-AREA (Stoe & Cie, 2002 ▶); cell refinement: X-AREA; data reduction: X-RED32 (Stoe & Cie, 2002 ▶); program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808030432/is2337sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808030432/is2337Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C25H27N2+·Br·H2OF(000) = 944
Mr = 453.40Dx = 1.300 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 13886 reflections
a = 14.1933 (8) Åθ = 1.4–28.0°
b = 11.4594 (3) ŵ = 1.79 mm1
c = 18.3014 (10) ÅT = 295 K
β = 128.916 (3)°Block, colourless
V = 2316.1 (2) Å30.71 × 0.63 × 0.54 mm
Z = 4
Stoe IPDS II diffractometer5283 independent reflections
Radiation source: sealed X-ray tube, 12 x 0.4 mm long-fine focus2688 reflections with I > 2σ(I)
plane graphiteRint = 0.071
Detector resolution: 6.67 pixels mm-1θmax = 27.6°, θmin = 1.8°
ω scansh = −18→18
Absorption correction: integration (X-RED32; Stoe & Cie, 2002)k = −13→14
Tmin = 0.363, Tmax = 0.444l = −23→23
18735 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.065Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.173H atoms treated by a mixture of independent and constrained refinement
S = 0.99w = 1/[σ2(Fo2) + (0.0827P)2] where P = (Fo2 + 2Fc2)/3
5283 reflections(Δ/σ)max < 0.001
268 parametersΔρmax = 0.47 e Å3
3 restraintsΔρmin = −0.24 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
N1−0.1093 (3)0.1691 (3)0.9193 (2)0.0541 (10)
N2−0.1505 (3)0.0103 (3)0.8391 (2)0.0539 (11)
C1−0.1415 (3)0.0860 (3)0.9554 (3)0.0514 (11)
C2−0.1469 (4)0.0912 (4)1.0285 (3)0.0622 (14)
C3−0.1784 (4)−0.0099 (4)1.0477 (3)0.0753 (17)
C4−0.2034 (4)−0.1121 (4)0.9973 (3)0.0742 (17)
C5−0.1995 (4)−0.1173 (3)0.9243 (3)0.0645 (16)
C6−0.1673 (3)−0.0157 (3)0.9049 (3)0.0505 (11)
C7−0.1159 (4)0.1196 (3)0.8509 (3)0.0587 (12)
C8−0.1677 (4)−0.0701 (4)0.7691 (3)0.0700 (17)
C9−0.3031 (5)−0.0933 (4)0.6894 (3)0.0853 (19)
C10−0.3233 (6)−0.1767 (6)0.6209 (4)0.105 (2)
C11−0.4522 (5)−0.2161 (5)0.5455 (4)0.0905 (19)
C12−0.5522 (5)−0.1513 (5)0.5160 (4)0.102 (2)
C13−0.6656 (6)−0.1874 (7)0.4419 (4)0.107 (3)
C14−0.6809 (8)−0.2866 (8)0.3982 (5)0.121 (3)
C15−0.5849 (10)−0.3547 (7)0.4275 (6)0.128 (4)
C16−0.4716 (7)−0.3209 (6)0.5006 (6)0.113 (3)
C17−0.0775 (4)0.2925 (3)0.9491 (3)0.0652 (16)
C18−0.1947 (5)0.3644 (4)0.8951 (4)0.0844 (19)
C19−0.1744 (5)0.4916 (4)0.9136 (4)0.085 (2)
C20−0.2942 (5)0.5556 (4)0.8583 (4)0.079 (2)
C21−0.3563 (8)0.5820 (7)0.7649 (5)0.126 (3)
C22−0.4712 (9)0.6297 (8)0.7129 (6)0.166 (4)
C23−0.5191 (7)0.6575 (6)0.7529 (8)0.134 (4)
C24−0.4537 (8)0.6398 (7)0.8464 (8)0.132 (4)
C25−0.3441 (6)0.5865 (5)0.8976 (5)0.093 (2)
O10.0138 (8)0.3343 (4)0.8276 (5)0.145 (3)
Br10.01170 (5)0.12751 (4)0.69968 (4)0.0869 (2)
H2−0.130100.159401.062300.0750*
H3−0.18330−0.010501.096000.0900*
H4−0.22340−0.179101.013600.0890*
H5−0.21740−0.185300.890000.0780*
H7−0.098300.157400.815800.0700*
H8A−0.12700−0.143300.799300.0850*
H8B−0.13160−0.036900.743100.0850*
H9A−0.33960−0.122900.716100.1020*
H9B−0.34280−0.020400.657900.1020*
H10A−0.27450−0.245200.654500.1260*
H10B−0.29360−0.142500.590400.1260*
H12−0.54230−0.082400.547000.1230*
H13−0.73240−0.142200.421800.1270*
H14−0.75850−0.309600.346800.1460*
H15−0.59700−0.425000.397300.1540*
H16−0.40610−0.368400.520800.1360*
H17A−0.025400.321600.935900.0780*
H17B−0.034400.298901.016100.0780*
H18A−0.240300.351100.828400.1010*
H18B−0.243500.336900.911900.1010*
H19A−0.127000.520500.895900.1020*
H19B−0.129200.506100.980100.1020*
H21−0.321000.567800.736800.1510*
H22−0.515000.642200.648800.2000*
H23−0.596600.688900.717700.1610*
H24−0.484600.664500.876000.1580*
H25−0.303100.571200.960900.1110*
HW1−0.042 (7)0.364 (8)0.775 (4)0.2170*
HW20.071 (6)0.383 (7)0.854 (7)0.2170*
U11U22U33U12U13U23
N10.0533 (19)0.0500 (15)0.0617 (19)−0.0075 (14)0.0374 (17)−0.0040 (15)
N20.0536 (19)0.0543 (17)0.0612 (19)−0.0002 (14)0.0396 (17)−0.0013 (14)
C10.038 (2)0.0523 (19)0.054 (2)0.0024 (16)0.0242 (18)0.0012 (17)
C20.059 (3)0.070 (2)0.058 (2)−0.002 (2)0.037 (2)−0.0056 (19)
C30.079 (3)0.094 (3)0.065 (3)0.001 (3)0.051 (3)0.010 (2)
C40.079 (3)0.070 (3)0.080 (3)−0.003 (2)0.053 (3)0.015 (2)
C50.067 (3)0.052 (2)0.074 (3)−0.004 (2)0.044 (2)0.001 (2)
C60.043 (2)0.0499 (19)0.057 (2)0.0042 (16)0.0307 (19)0.0045 (17)
C70.054 (2)0.056 (2)0.069 (2)−0.0047 (19)0.040 (2)0.004 (2)
C80.078 (3)0.071 (3)0.074 (3)−0.004 (2)0.054 (3)−0.010 (2)
C90.087 (4)0.080 (3)0.066 (3)0.013 (3)0.037 (3)−0.004 (2)
C100.100 (4)0.116 (4)0.101 (4)0.011 (4)0.064 (4)−0.021 (4)
C110.071 (3)0.088 (3)0.089 (4)−0.002 (3)0.039 (3)−0.016 (3)
C120.078 (4)0.099 (4)0.089 (4)0.008 (3)0.033 (3)−0.010 (3)
C130.075 (4)0.133 (5)0.091 (4)−0.012 (4)0.042 (4)0.015 (4)
C140.116 (6)0.141 (6)0.084 (4)−0.059 (5)0.052 (4)−0.009 (4)
C150.158 (8)0.116 (5)0.138 (6)−0.047 (6)0.106 (7)−0.041 (5)
C160.108 (5)0.099 (4)0.152 (6)−0.006 (4)0.091 (5)−0.020 (4)
C170.068 (3)0.050 (2)0.078 (3)−0.0074 (19)0.046 (3)−0.0058 (19)
C180.082 (3)0.067 (3)0.101 (4)−0.002 (2)0.056 (3)−0.009 (3)
C190.093 (4)0.059 (3)0.100 (4)−0.008 (2)0.059 (3)−0.006 (2)
C200.087 (4)0.064 (3)0.090 (4)0.001 (2)0.058 (3)0.006 (2)
C210.143 (6)0.133 (5)0.111 (5)0.037 (5)0.084 (5)0.026 (4)
C220.161 (8)0.177 (9)0.109 (6)0.082 (7)0.060 (6)0.045 (5)
C230.084 (5)0.103 (5)0.174 (8)0.030 (4)0.061 (6)0.019 (5)
C240.129 (6)0.121 (6)0.174 (8)0.014 (5)0.109 (6)−0.024 (6)
C250.104 (4)0.086 (3)0.107 (4)0.002 (3)0.075 (4)−0.005 (3)
O10.248 (6)0.096 (3)0.196 (5)0.007 (4)0.190 (5)0.018 (3)
Br10.1042 (4)0.0715 (3)0.0851 (4)−0.0021 (3)0.0595 (3)0.0094 (2)
O1—HW10.84 (7)C23—C241.355 (16)
O1—HW20.84 (11)C24—C251.356 (15)
N1—C11.390 (6)C2—H20.9300
N1—C71.323 (6)C3—H30.9300
N1—C171.480 (5)C4—H40.9300
N2—C61.399 (6)C5—H50.9300
N2—C81.469 (6)C7—H70.9300
N2—C71.313 (5)C8—H8B0.9700
C1—C61.386 (5)C8—H8A0.9700
C1—C21.389 (7)C9—H9B0.9700
C2—C31.365 (7)C9—H9A0.9700
C3—C41.392 (6)C10—H10A0.9700
C4—C51.373 (8)C10—H10B0.9700
C5—C61.376 (6)C12—H120.9300
C8—C91.539 (8)C13—H130.9300
C9—C101.455 (8)C14—H140.9300
C10—C111.511 (10)C15—H150.9300
C11—C121.376 (11)C16—H160.9300
C11—C161.382 (9)C17—H17A0.9700
C12—C131.363 (10)C17—H17B0.9700
C13—C141.327 (12)C18—H18B0.9700
C14—C151.355 (17)C18—H18A0.9700
C15—C161.350 (15)C19—H19B0.9700
C17—C181.535 (9)C19—H19A0.9700
C18—C191.483 (7)C21—H210.9300
C19—C201.514 (10)C22—H220.9300
C20—C251.336 (12)C23—H230.9300
C20—C211.377 (9)C24—H240.9300
C21—C221.384 (16)C25—H250.9300
C22—C231.313 (19)
Br1···O13.318 (8)HW2···Br1iii2.96 (8)
Br1···O1i3.383 (5)HW2···H8Biii2.5800
Br1···HW1i3.04 (9)H3···Br1iv3.2000
Br1···H17Bii3.1100H5···C83.0200
Br1···H8Aiii3.0900H5···C20vi3.0900
Br1···H3iv3.2000H5···H9A2.5900
Br1···HW2i2.96 (8)H7···O12.5000
Br1···H8B3.2200H7···H17A2.5700
Br1···H2ii3.1600H7···H8B2.4800
Br1···H13v3.1000H8A···H10A2.4100
O1···C173.236 (13)H8A···Br1i3.0900
O1···Br1iii3.383 (5)H8A···C53.0600
O1···C73.257 (10)H8B···H10B2.5500
O1···Br13.318 (8)H8B···HW2i2.5800
O1···H17A2.3800H8B···H72.4800
O1···H72.5000H8B···Br13.2200
N1···N22.175 (5)H9A···C52.9900
N2···N12.175 (5)H9A···C122.9600
C1···C6iv3.509 (7)H9A···H52.5900
C2···C8iv3.597 (7)H9A···C62.9700
C3···C7iv3.568 (9)H9B···C13v3.0500
C4···C7iv3.528 (8)H9B···C122.8500
C5···C93.574 (7)H9B···H122.3300
C6···C1iv3.509 (7)H10A···H8A2.4100
C7···O13.257 (10)H10A···H162.3900
C7···C3iv3.568 (9)H10B···H25ii2.4300
C7···C4iv3.528 (8)H10B···H8B2.5500
C8···C2iv3.597 (7)H12···H9B2.3300
C9···C53.574 (7)H12···C25vii3.0700
C17···O13.236 (13)H12···C92.6900
C1···H18B3.0900H13···Br1v3.1000
C2···H17B2.9500H14···HW1v2.3300
C5···H9A2.9900H15···H21v2.5400
C5···H8A3.0600H16···H10A2.3900
C6···H9A2.9700H17A···O12.3800
C7···H18A3.0700H17A···H19A2.5500
C8···H53.0200H17A···H72.5700
C9···H122.6900H17B···C22.9500
C11···H22vi3.0200H17B···H22.5600
C11···H24ii2.9000H17B···Br1x3.1100
C12···H9A2.9600H18A···C212.9400
C12···H9B2.8500H18A···C73.0700
C13···H9Bv3.0500H18B···C13.0900
C15···H24ii3.0600H19A···H17A2.5500
C16···H24ii2.8100H19A···H212.5100
C17···H23.0200H19B···H252.3800
C18···H23vii3.0700H21···H15v2.5400
C20···H5viii3.0900H21···H19A2.5100
C21···H18A2.9400H22···C11viii3.0200
C25···H12ix3.0700H23···C18ix3.0700
HW1···H14v2.3300H24···C11x2.9000
HW1···Br1iii3.04 (9)H24···C16x2.8100
H2···Br1x3.1600H24···C15x3.0600
H2···H17B2.5600H25···H10Bx2.4300
H2···C173.0200H25···H19B2.3800
HW1—O1—HW2105 (9)N2—C8—H8A109.00
C1—N1—C7107.9 (3)C9—C8—H8A109.00
C1—N1—C17126.5 (4)C9—C8—H8B109.00
C7—N1—C17125.6 (4)N2—C8—H8B109.00
C6—N2—C7108.1 (4)H8A—C8—H8B108.00
C6—N2—C8126.3 (4)C8—C9—H9B109.00
C7—N2—C8125.6 (4)C10—C9—H9A109.00
N1—C1—C6106.7 (4)C10—C9—H9B109.00
C2—C1—C6121.8 (4)H9A—C9—H9B108.00
N1—C1—C2131.5 (4)C8—C9—H9A109.00
C1—C2—C3115.9 (4)C9—C10—H10A108.00
C2—C3—C4122.1 (5)C9—C10—H10B108.00
C3—C4—C5122.2 (5)C11—C10—H10B108.00
C4—C5—C6115.9 (4)H10A—C10—H10B107.00
N2—C6—C1106.2 (4)C11—C10—H10A108.00
C1—C6—C5122.1 (4)C11—C12—H12120.00
N2—C6—C5131.8 (4)C13—C12—H12120.00
N1—C7—N2111.2 (5)C12—C13—H13120.00
N2—C8—C9111.1 (5)C14—C13—H13120.00
C8—C9—C10112.5 (6)C15—C14—H14120.00
C9—C10—C11117.0 (7)C13—C14—H14120.00
C10—C11—C12123.8 (6)C16—C15—H15120.00
C12—C11—C16117.7 (7)C14—C15—H15120.00
C10—C11—C16118.5 (8)C11—C16—H16120.00
C11—C12—C13120.6 (6)C15—C16—H16120.00
C12—C13—C14120.2 (9)N1—C17—H17B110.00
C13—C14—C15120.8 (9)C18—C17—H17A110.00
C14—C15—C16120.2 (8)N1—C17—H17A110.00
C11—C16—C15120.5 (9)H17A—C17—H17B108.00
N1—C17—C18108.6 (4)C18—C17—H17B110.00
C17—C18—C19113.8 (5)C17—C18—H18A109.00
C18—C19—C20110.4 (6)C17—C18—H18B109.00
C19—C20—C21120.7 (8)C19—C18—H18B109.00
C19—C20—C25121.4 (6)H18A—C18—H18B108.00
C21—C20—C25117.9 (8)C19—C18—H18A109.00
C20—C21—C22120.0 (10)C18—C19—H19B110.00
C21—C22—C23120.8 (9)C20—C19—H19A110.00
C22—C23—C24118.9 (12)C20—C19—H19B110.00
C23—C24—C25121.2 (12)H19A—C19—H19B108.00
C20—C25—C24120.9 (8)C18—C19—H19A110.00
C3—C2—H2122.00C22—C21—H21120.00
C1—C2—H2122.00C20—C21—H21120.00
C2—C3—H3119.00C21—C22—H22120.00
C4—C3—H3119.00C23—C22—H22120.00
C5—C4—H4119.00C24—C23—H23120.00
C3—C4—H4119.00C22—C23—H23121.00
C4—C5—H5122.00C23—C24—H24119.00
C6—C5—H5122.00C25—C24—H24119.00
N2—C7—H7124.00C20—C25—H25119.00
N1—C7—H7124.00C24—C25—H25120.00
C7—N1—C1—C2178.3 (6)C4—C5—C6—C1−0.6 (8)
C17—N1—C1—C2−3.8 (8)N2—C8—C9—C10−177.5 (5)
C7—N1—C1—C60.2 (5)C8—C9—C10—C11173.4 (5)
C17—N1—C1—C6178.1 (4)C9—C10—C11—C1224.9 (9)
C1—N1—C7—N20.3 (6)C9—C10—C11—C16−157.8 (7)
C17—N1—C7—N2−177.7 (4)C10—C11—C12—C13174.1 (7)
C1—N1—C17—C18−85.3 (5)C12—C11—C16—C153.1 (13)
C7—N1—C17—C1892.3 (7)C16—C11—C12—C13−3.2 (11)
C6—N2—C8—C972.9 (5)C10—C11—C16—C15−174.4 (9)
C7—N2—C8—C9−107.4 (6)C11—C12—C13—C141.0 (12)
C7—N2—C6—C5−177.9 (6)C12—C13—C14—C151.4 (14)
C8—N2—C6—C51.8 (9)C13—C14—C15—C16−1.5 (17)
C7—N2—C6—C10.6 (5)C14—C15—C16—C11−0.8 (16)
C8—N2—C6—C1−179.7 (4)N1—C17—C18—C19−175.7 (5)
C6—N2—C7—N1−0.6 (6)C17—C18—C19—C20−179.6 (5)
C8—N2—C7—N1179.7 (4)C18—C19—C20—C21−81.0 (8)
N1—C1—C2—C3−177.6 (5)C18—C19—C20—C2597.9 (7)
C2—C1—C6—C5−0.1 (8)C19—C20—C21—C22173.4 (7)
N1—C1—C6—C5178.3 (5)C25—C20—C21—C22−5.5 (11)
C6—C1—C2—C30.4 (8)C19—C20—C25—C24−177.4 (7)
C2—C1—C6—N2−178.8 (5)C21—C20—C25—C241.5 (10)
N1—C1—C6—N2−0.5 (5)C20—C21—C22—C234.6 (14)
C1—C2—C3—C40.1 (8)C21—C22—C23—C240.6 (14)
C2—C3—C4—C5−0.9 (9)C22—C23—C24—C25−4.8 (14)
C3—C4—C5—C61.1 (8)C23—C24—C25—C203.8 (13)
C4—C5—C6—N2177.8 (5)
D—H···AD—HH···AD···AD—H···A
C7—H7···O10.932.503.257 (10)139
C17—H17A···O10.972.383.236 (13)148
C24—H24···Cg1x0.932.843.771 (14)176
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C7—H7⋯O10.932.503.257 (10)139
C17—H17A⋯O10.972.383.236 (13)148
C24—H24⋯Cg1i0.932.843.771 (14)176

Symmetry code: (i) . Cg1 is the centriod of the C11–C16 phenyl ring.

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Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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Journal:  J Pharmacobiodyn       Date:  1989-09

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Authors:  H Küçükbay; R Durmaz; M Güven; S Günal
Journal:  Arzneimittelforschung       Date:  2001

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Journal:  Farmaco       Date:  2003-06
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