Literature DB >> 21201201

6,7,9,10-Tetra-hydro-16,22-ethano-oxyethano-5,8,11,19-tetra-oxa-16,22-diaza-dibenzo[h,q]cyclo-octa-decine-17,21-dione: a benzyl-annelated macrobicyclic diamide.

Gary L N Smith, Yang Lei, Douglas R Powell, Richard W Taylor.   

Abstract

The macrobicyclic title compound, C(24)H(28)N(2)O(7), has two tertiary diamide bridgehead atoms and is composed of a 12-membered ring (N(2)O(2) donor set) and two 18-membered rings (N(2)O(4) donor sets). The solid-state structure shows that each of the amide groups is not coplanar with the adjacent benzene ring and NMR studies indicate that this conformational relationship persists in solution.

Entities:  

Year:  2008        PMID: 21201201      PMCID: PMC2959315          DOI: 10.1107/S1600536808030067

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see: Dietrich et al. (1969 ▶); Tummler et al. (1977 ▶); Niklas et al. (2004 ▶); Schickaneder et al. (2006 ▶); Lehn (1973 ▶). For related structures, see: Tarnowska et al. (2004 ▶); Smith et al. (2007 ▶). For the synthesis, see: Dietrich et al. (1973 ▶). For NMR studies, see: Smith et al. (2007 ▶); Silverstein & Webster (1998 ▶).

Experimental

Crystal data

C24H28N2O7 M = 456.48 Monoclinic, a = 15.125 (2) Å b = 9.3901 (14) Å c = 16.446 (2) Å β = 108.416 (5)° V = 2216.1 (5) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 87 (2) K 0.58 × 0.56 × 0.52 mm

Data collection

Bruker APEX diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2007 ▶) T min = 0.940, T max = 0.950 23465 measured reflections 4352 independent reflections 4142 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.085 S = 1.03 4352 reflections 298 parameters H-atom parameters constrained Δρmax = 0.24 e Å−3 Δρmin = −0.23 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT (Bruker, 1998 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808030067/pk2117sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808030067/pk2117Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C24H28N2O7F(000) = 968
Mr = 456.48Dx = 1.368 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 7313 reflections
a = 15.125 (2) Åθ = 2.6–28.2°
b = 9.3901 (14) ŵ = 0.10 mm1
c = 16.446 (2) ÅT = 87 K
β = 108.416 (5)°Block, colorless
V = 2216.1 (5) Å30.58 × 0.56 × 0.52 mm
Z = 4
Bruker APEX diffractometer4352 independent reflections
Radiation source: fine-focus sealed tube4142 reflections with I > 2σ(I)
graphiteRint = 0.020
Detector resolution: 8.366 pixels mm-1θmax = 26.0°, θmin = 2.2°
ω scansh = −18→18
Absorption correction: multi-scan (SADABS; Sheldrick, 2007)k = −11→11
Tmin = 0.940, Tmax = 0.950l = −20→20
23465 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.032Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.085H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0451P)2 + 0.7509P] where P = (Fo2 + 2Fc2)/3
4352 reflections(Δ/σ)max = 0.001
298 parametersΔρmax = 0.24 e Å3
0 restraintsΔρmin = −0.23 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.64508 (5)0.74748 (8)0.62300 (5)0.02150 (17)
O20.59736 (5)0.89145 (8)0.45462 (5)0.02121 (17)
O30.64605 (5)0.75428 (8)0.31729 (5)0.02270 (17)
O40.57879 (5)0.34635 (8)0.45980 (5)0.02311 (17)
O50.84403 (5)0.62786 (8)0.72596 (5)0.02390 (17)
O60.81395 (5)0.53553 (8)0.52618 (5)0.02129 (17)
O70.85667 (5)0.62395 (8)0.34044 (5)0.02538 (18)
N10.72291 (6)0.48401 (9)0.65874 (5)0.01944 (19)
N20.72987 (6)0.49648 (9)0.34218 (6)0.02010 (19)
C10.66837 (7)0.54166 (11)0.70866 (6)0.0198 (2)
C20.65342 (8)0.46203 (12)0.77389 (7)0.0240 (2)
H20.68200.37130.78770.029*
C30.59674 (8)0.51404 (12)0.81940 (7)0.0265 (2)
H30.58690.45930.86440.032*
C40.55497 (8)0.64576 (12)0.79873 (7)0.0249 (2)
H40.51570.68100.82920.030*
C50.56994 (7)0.72721 (12)0.73368 (7)0.0224 (2)
H50.54130.81800.72030.027*
C60.62683 (7)0.67631 (11)0.68798 (6)0.0193 (2)
C70.60204 (8)0.88484 (11)0.60179 (7)0.0219 (2)
H7A0.61670.94490.65390.026*
H7B0.53350.87400.57850.026*
C80.63801 (8)0.95395 (11)0.53658 (7)0.0232 (2)
H8A0.62341.05700.53360.028*
H8B0.70660.94330.55400.028*
C90.63046 (8)0.96135 (11)0.39353 (7)0.0228 (2)
H9A0.69940.96240.41400.027*
H9B0.60841.06120.38690.027*
C100.59670 (8)0.88731 (11)0.30861 (7)0.0233 (2)
H10A0.52880.87000.29240.028*
H10B0.60920.94650.26370.028*
C110.68585 (7)0.35454 (11)0.60899 (7)0.0217 (2)
H11A0.68580.27590.64910.026*
H11B0.72750.32690.57580.026*
C120.58634 (7)0.37445 (12)0.54701 (7)0.0224 (2)
H12A0.54370.31000.56440.027*
H12B0.56600.47350.55170.027*
C130.61408 (7)0.45732 (11)0.41885 (7)0.0219 (2)
H13A0.64410.53220.46090.026*
H13B0.56260.50120.37260.026*
C140.68495 (7)0.39065 (11)0.38188 (7)0.0219 (2)
H14A0.73330.34110.42820.026*
H14B0.65330.31870.33840.026*
C150.80862 (7)0.53954 (11)0.67021 (7)0.0200 (2)
C160.86233 (7)0.49116 (12)0.61103 (7)0.0233 (2)
H16A0.92560.53300.62990.028*
H16B0.86850.38620.61310.028*
C170.86817 (7)0.50959 (12)0.47159 (7)0.0235 (2)
H17A0.88510.40740.47450.028*
H17B0.92660.56540.49190.028*
C180.81667 (7)0.54926 (11)0.37915 (7)0.0206 (2)
C190.67883 (7)0.54321 (11)0.25679 (7)0.0203 (2)
C200.67082 (7)0.45530 (12)0.18772 (7)0.0241 (2)
H200.69960.36420.19650.029*
C210.62088 (8)0.49929 (13)0.10519 (7)0.0270 (2)
H210.61530.43850.05760.032*
C220.57953 (8)0.63187 (13)0.09301 (7)0.0262 (2)
H220.54620.66270.03660.031*
C230.58607 (7)0.72109 (12)0.16232 (7)0.0243 (2)
H230.55690.81190.15310.029*
C240.63543 (7)0.67709 (11)0.24507 (7)0.0207 (2)
U11U22U33U12U13U23
O10.0234 (4)0.0199 (4)0.0218 (4)0.0037 (3)0.0079 (3)0.0030 (3)
O20.0234 (4)0.0210 (4)0.0195 (4)−0.0021 (3)0.0071 (3)−0.0003 (3)
O30.0257 (4)0.0211 (4)0.0209 (4)0.0051 (3)0.0067 (3)0.0006 (3)
O40.0239 (4)0.0256 (4)0.0195 (4)−0.0087 (3)0.0064 (3)−0.0022 (3)
O50.0218 (4)0.0226 (4)0.0245 (4)−0.0028 (3)0.0034 (3)−0.0016 (3)
O60.0177 (3)0.0262 (4)0.0196 (4)0.0040 (3)0.0055 (3)0.0019 (3)
O70.0231 (4)0.0266 (4)0.0282 (4)−0.0026 (3)0.0105 (3)0.0011 (3)
N10.0182 (4)0.0184 (4)0.0203 (4)−0.0004 (3)0.0040 (3)−0.0012 (3)
N20.0188 (4)0.0201 (4)0.0217 (4)0.0006 (3)0.0068 (4)0.0016 (3)
C10.0174 (5)0.0209 (5)0.0191 (5)−0.0032 (4)0.0030 (4)−0.0029 (4)
C20.0240 (5)0.0215 (5)0.0241 (5)−0.0041 (4)0.0043 (4)0.0005 (4)
C30.0278 (6)0.0297 (6)0.0225 (5)−0.0089 (5)0.0086 (4)0.0004 (4)
C40.0210 (5)0.0315 (6)0.0229 (5)−0.0066 (4)0.0078 (4)−0.0069 (4)
C50.0198 (5)0.0239 (5)0.0217 (5)−0.0005 (4)0.0037 (4)−0.0035 (4)
C60.0171 (5)0.0216 (5)0.0170 (5)−0.0034 (4)0.0023 (4)−0.0015 (4)
C70.0250 (5)0.0183 (5)0.0207 (5)0.0037 (4)0.0047 (4)−0.0008 (4)
C80.0261 (5)0.0186 (5)0.0221 (5)−0.0018 (4)0.0035 (4)−0.0014 (4)
C90.0248 (5)0.0195 (5)0.0271 (6)0.0012 (4)0.0127 (4)0.0026 (4)
C100.0248 (5)0.0221 (5)0.0246 (5)0.0062 (4)0.0101 (4)0.0043 (4)
C110.0231 (5)0.0181 (5)0.0220 (5)−0.0001 (4)0.0043 (4)−0.0021 (4)
C120.0204 (5)0.0266 (5)0.0201 (5)−0.0034 (4)0.0062 (4)−0.0018 (4)
C130.0191 (5)0.0224 (5)0.0234 (5)−0.0018 (4)0.0057 (4)0.0022 (4)
C140.0220 (5)0.0189 (5)0.0246 (5)−0.0016 (4)0.0071 (4)0.0013 (4)
C150.0186 (5)0.0191 (5)0.0196 (5)0.0021 (4)0.0022 (4)0.0041 (4)
C160.0174 (5)0.0291 (6)0.0210 (5)0.0028 (4)0.0026 (4)0.0025 (4)
C170.0179 (5)0.0282 (6)0.0245 (5)0.0034 (4)0.0070 (4)0.0001 (4)
C180.0194 (5)0.0193 (5)0.0245 (5)0.0024 (4)0.0087 (4)−0.0015 (4)
C190.0161 (5)0.0233 (5)0.0221 (5)−0.0024 (4)0.0068 (4)0.0011 (4)
C200.0200 (5)0.0246 (5)0.0291 (6)−0.0017 (4)0.0098 (4)−0.0033 (4)
C210.0240 (5)0.0335 (6)0.0244 (5)−0.0070 (5)0.0090 (4)−0.0072 (5)
C220.0224 (5)0.0350 (6)0.0202 (5)−0.0047 (5)0.0052 (4)0.0018 (4)
C230.0217 (5)0.0263 (5)0.0251 (5)0.0003 (4)0.0076 (4)0.0033 (4)
C240.0182 (5)0.0236 (5)0.0218 (5)−0.0023 (4)0.0085 (4)−0.0003 (4)
O1—C61.3606 (13)C8—H8B0.9900
O1—C71.4373 (12)C9—C101.4979 (15)
O2—C91.4173 (12)C9—H9A0.9900
O2—C81.4197 (12)C9—H9B0.9900
O3—C241.3570 (13)C10—H10A0.9900
O3—C101.4390 (12)C10—H10B0.9900
O4—C121.4270 (12)C11—C121.5395 (14)
O4—C131.4323 (13)C11—H11A0.9900
O5—C151.2268 (13)C11—H11B0.9900
O6—C171.4151 (12)C12—H12A0.9900
O6—C161.4181 (12)C12—H12B0.9900
O7—C181.2274 (13)C13—C141.5238 (15)
N1—C151.3540 (14)C13—H13A0.9900
N1—C11.4407 (13)C13—H13B0.9900
N1—C111.4738 (13)C14—H14A0.9900
N2—C181.3544 (14)C14—H14B0.9900
N2—C191.4408 (13)C15—C161.5211 (15)
N2—C141.4683 (13)C16—H16A0.9900
C1—C21.3835 (15)C16—H16B0.9900
C1—C61.4050 (15)C17—C181.5195 (15)
C2—C31.3925 (16)C17—H17A0.9900
C2—H20.9500C17—H17B0.9900
C3—C41.3815 (17)C19—C201.3782 (15)
C3—H30.9500C19—C241.4030 (15)
C4—C51.3906 (16)C20—C211.3914 (16)
C4—H40.9500C20—H200.9500
C5—C61.3937 (15)C21—C221.3792 (17)
C5—H50.9500C21—H210.9500
C7—C81.4953 (15)C22—C231.3927 (16)
C7—H7A0.9900C22—H220.9500
C7—H7B0.9900C23—C241.3923 (15)
C8—H8A0.9900C23—H230.9500
C6—O1—C7116.27 (8)C12—C11—H11B109.0
C9—O2—C8109.73 (8)H11A—C11—H11B107.8
C24—O3—C10117.56 (8)O4—C12—C11113.21 (9)
C12—O4—C13114.50 (8)O4—C12—H12A108.9
C17—O6—C16110.57 (8)C11—C12—H12A108.9
C15—N1—C1118.12 (9)O4—C12—H12B108.9
C15—N1—C11125.07 (9)C11—C12—H12B108.9
C1—N1—C11116.13 (8)H12A—C12—H12B107.7
C18—N2—C19118.10 (9)O4—C13—C14107.60 (8)
C18—N2—C14124.55 (9)O4—C13—H13A110.2
C19—N2—C14117.31 (8)C14—C13—H13A110.2
C2—C1—C6120.26 (10)O4—C13—H13B110.2
C2—C1—N1120.14 (10)C14—C13—H13B110.2
C6—C1—N1119.53 (9)H13A—C13—H13B108.5
C1—C2—C3120.42 (10)N2—C14—C13112.46 (8)
C1—C2—H2119.8N2—C14—H14A109.1
C3—C2—H2119.8C13—C14—H14A109.1
C4—C3—C2119.54 (10)N2—C14—H14B109.1
C4—C3—H3120.2C13—C14—H14B109.1
C2—C3—H3120.2H14A—C14—H14B107.8
C3—C4—C5120.58 (10)O5—C15—N1122.50 (10)
C3—C4—H4119.7O5—C15—C16119.00 (9)
C5—C4—H4119.7N1—C15—C16118.50 (9)
C4—C5—C6120.30 (10)O6—C16—C15109.15 (8)
C4—C5—H5119.8O6—C16—H16A109.9
C6—C5—H5119.8C15—C16—H16A109.9
O1—C6—C5124.62 (9)O6—C16—H16B109.9
O1—C6—C1116.48 (9)C15—C16—H16B109.9
C5—C6—C1118.89 (10)H16A—C16—H16B108.3
O1—C7—C8108.90 (9)O6—C17—C18112.08 (8)
O1—C7—H7A109.9O6—C17—H17A109.2
C8—C7—H7A109.9C18—C17—H17A109.2
O1—C7—H7B109.9O6—C17—H17B109.2
C8—C7—H7B109.9C18—C17—H17B109.2
H7A—C7—H7B108.3H17A—C17—H17B107.9
O2—C8—C7110.79 (9)O7—C18—N2122.89 (10)
O2—C8—H8A109.5O7—C18—C17118.56 (9)
C7—C8—H8A109.5N2—C18—C17118.51 (9)
O2—C8—H8B109.5C20—C19—C24120.53 (10)
C7—C8—H8B109.5C20—C19—N2120.09 (10)
H8A—C8—H8B108.1C24—C19—N2119.35 (9)
O2—C9—C10110.69 (9)C19—C20—C21120.36 (11)
O2—C9—H9A109.5C19—C20—H20119.8
C10—C9—H9A109.5C21—C20—H20119.8
O2—C9—H9B109.5C22—C21—C20119.42 (10)
C10—C9—H9B109.5C22—C21—H21120.3
H9A—C9—H9B108.1C20—C21—H21120.3
O3—C10—C9107.28 (8)C21—C22—C23120.83 (10)
O3—C10—H10A110.3C21—C22—H22119.6
C9—C10—H10A110.3C23—C22—H22119.6
O3—C10—H10B110.3C24—C23—C22119.93 (11)
C9—C10—H10B110.3C24—C23—H23120.0
H10A—C10—H10B108.5C22—C23—H23120.0
N1—C11—C12112.85 (8)O3—C24—C23125.15 (10)
N1—C11—H11A109.0O3—C24—C19115.95 (9)
C12—C11—H11A109.0C23—C24—C19118.90 (10)
N1—C11—H11B109.0
C15—N1—C1—C2−108.91 (11)C1—N1—C15—O56.14 (15)
C11—N1—C1—C262.11 (12)C11—N1—C15—O5−164.00 (9)
C15—N1—C1—C674.13 (12)C1—N1—C15—C16−173.30 (9)
C11—N1—C1—C6−114.85 (10)C11—N1—C15—C1616.55 (14)
C6—C1—C2—C30.33 (16)C17—O6—C16—C15171.97 (8)
N1—C1—C2—C3−176.61 (9)O5—C15—C16—O6−114.72 (10)
C1—C2—C3—C40.33 (16)N1—C15—C16—O664.74 (12)
C2—C3—C4—C5−0.75 (16)C16—O6—C17—C18177.25 (9)
C3—C4—C5—C60.51 (16)C19—N2—C18—O7−7.04 (15)
C7—O1—C6—C50.33 (14)C14—N2—C18—O7170.73 (10)
C7—O1—C6—C1179.68 (8)C19—N2—C18—C17175.37 (9)
C4—C5—C6—O1179.49 (9)C14—N2—C18—C17−6.86 (15)
C4—C5—C6—C10.15 (15)O6—C17—C18—O7130.66 (10)
C2—C1—C6—O1−179.96 (9)O6—C17—C18—N2−51.64 (13)
N1—C1—C6—O1−3.01 (13)C18—N2—C19—C20103.13 (12)
C2—C1—C6—C5−0.57 (15)C14—N2—C19—C20−74.81 (12)
N1—C1—C6—C5176.39 (9)C18—N2—C19—C24−78.59 (12)
C6—O1—C7—C8173.66 (8)C14—N2—C19—C24103.47 (11)
C9—O2—C8—C7178.33 (8)C24—C19—C20—C211.14 (16)
O1—C7—C8—O275.03 (10)N2—C19—C20—C21179.40 (9)
C8—O2—C9—C10173.86 (8)C19—C20—C21—C220.11 (16)
C24—O3—C10—C9−171.74 (8)C20—C21—C22—C23−0.92 (16)
O2—C9—C10—O3−71.12 (10)C21—C22—C23—C240.48 (16)
C15—N1—C11—C12−133.07 (10)C10—O3—C24—C235.01 (15)
C1—N1—C11—C1256.61 (12)C10—O3—C24—C19−175.35 (9)
C13—O4—C12—C11−76.49 (11)C22—C23—C24—O3−179.61 (10)
N1—C11—C12—O4122.34 (10)C22—C23—C24—C190.76 (15)
C12—O4—C13—C14125.90 (9)C20—C19—C24—O3178.77 (9)
C18—N2—C14—C13101.99 (11)N2—C19—C24—O30.50 (13)
C19—N2—C14—C13−80.22 (11)C20—C19—C24—C23−1.56 (15)
O4—C13—C14—N2−176.83 (8)N2—C19—C24—C23−179.83 (9)
  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  1H and 13C NMR assignments and X-ray structures for three monocyclic benzoannelated dilactam polyethers.

Authors:  Gary L N Smith; Susan S Alguindigue; Masood A Khan; Douglas R Powell; Richard W Taylor
Journal:  Magn Reson Chem       Date:  2006-09       Impact factor: 2.447

3.  The activation of tertiary carboxamides in metal complexes: an experimental and theoretical study on the methanolysis of acylated bispicolylamine copper(II) complexes.

Authors:  Nicole Niklas; Frank W Heinemann; Frank Hampel; Tim Clark; Ralf Alsfasser
Journal:  Inorg Chem       Date:  2004-07-26       Impact factor: 5.165

4.  Noncyclic crown-type polyethers, pyridinophane cryptands, and their alkali metal ion complexes: synthesis, complex stability, and kinetics.

Authors:  B Tümmler; G Maass; E Weber; W Wehner; F Vögtle
Journal:  J Am Chem Soc       Date:  1977-07-06       Impact factor: 15.419

5.  Three related benzoannelated diazapolyether macrocycles: effects of macrocycle ring size and position of benzo groups on hydrogen bonding of the amine H atoms.

Authors:  Gary L N Smith; Douglas R Powell; Masood A Khan; Richard W Taylor
Journal:  Acta Crystallogr C       Date:  2007-06-14       Impact factor: 1.172

  5 in total

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