Literature DB >> 21201188

Ethyl 3,5-dimethyl-1H-pyrrole-2-carboxyl-ate.

Cláudia T Arranja, Manuela Ramos Silva, Ana Matos Beja, Ana F P V Ferreira, Abílio J F N Sobral.   

Abstract

In the title compound, C(9)H(13)NO(2), there are two independent mol-ecules per asymmetric unit. The mol-ecules are very similar and almost planar, with the ethoxy-carbonyl group anti to the pyrrole N atom. The two independent mol-ecules are joined into dimeric units by strong hydrogen bonds between NH groups and carbonyl O atoms.

Entities:  

Year:  2008        PMID: 21201188      PMCID: PMC2959273          DOI: 10.1107/S1600536808029929

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see: Bonnett (1995 ▶, 2000 ▶). For related structures, see: Paixão et al. (2002 ▶), Ramos Silva et al. (2002 ▶); Sobral & Rocha Gonsalves (2001 ▶).

Experimental

Crystal data

C9H13NO2 M = 167.20 Triclinic, a = 8.1357 (2) Å b = 10.5568 (2) Å c = 12.1428 (2) Å α = 101.5451 (13)° β = 97.8791 (14)° γ = 110.4821 (14)° V = 932.52 (4) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 293 (2) K 0.25 × 0.20 × 0.15 mm

Data collection

Bruker APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2000 ▶) T min = 0.899, T max = 0.987 20370 measured reflections 4456 independent reflections 2368 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.052 wR(F 2) = 0.182 S = 1.03 4456 reflections 223 parameters H-atom parameters constrained Δρmax = 0.20 e Å−3 Δρmin = −0.21 e Å−3 Data collection: SMART (Bruker, 2003 ▶); cell refinement: SAINT (Bruker, 2003 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPII (Johnson, 1976 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808029929/bt2791sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808029929/bt2791Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H13NO2Z = 4
Mr = 167.20F(000) = 360
Triclinic, P1Dx = 1.191 Mg m3
a = 8.1357 (2) ÅMo Kα radiation, λ = 0.71073 Å
b = 10.5568 (2) ÅCell parameters from 3873 reflections
c = 12.1428 (2) Åθ = 2.4–23.9°
α = 101.5451 (13)°µ = 0.08 mm1
β = 97.8791 (14)°T = 293 K
γ = 110.4821 (14)°Prism, colourless
V = 932.52 (4) Å30.25 × 0.20 × 0.15 mm
Bruker APEX CCD area-detector diffractometer4456 independent reflections
Radiation source: fine-focus sealed tube2368 reflections with I > 2σ(I)
graphiteRint = 0.028
φ and ω scansθmax = 28.0°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Sheldrick, 2000)h = −10→10
Tmin = 0.899, Tmax = 0.987k = −13→13
20370 measured reflectionsl = −15→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.052Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.182H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0939P)2 + 0.0508P] where P = (Fo2 + 2Fc2)/3
4456 reflections(Δ/σ)max < 0.001
223 parametersΔρmax = 0.20 e Å3
0 restraintsΔρmin = −0.21 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.2122 (2)0.18401 (15)0.96119 (12)0.0526 (4)
H10.14720.16890.89410.063*
C10.2894 (2)0.31179 (18)1.04326 (14)0.0483 (4)
C20.3837 (3)0.29357 (19)1.13867 (15)0.0535 (5)
C30.3587 (3)0.1515 (2)1.11083 (17)0.0620 (5)
H30.40600.10831.15890.074*
C40.2537 (3)0.08658 (19)1.00165 (17)0.0561 (5)
C50.1877 (3)−0.0621 (2)0.92988 (19)0.0745 (6)
H5A0.0653−0.09120.88910.112*
H5B0.1938−0.12180.97900.112*
H5C0.2617−0.06840.87560.112*
C60.4927 (3)0.4029 (2)1.24868 (16)0.0700 (6)
H6A0.59410.47161.23310.105*
H6B0.53460.35941.30240.105*
H6C0.41930.44761.28100.105*
C70.2626 (2)0.43124 (19)1.01696 (15)0.0497 (4)
C80.3246 (3)0.67311 (19)1.08651 (16)0.0598 (5)
H8A0.19870.65981.07440.072*
H8B0.36850.69561.01960.072*
C90.4325 (3)0.7891 (2)1.19379 (19)0.0736 (6)
H9A0.39010.76421.25950.110*
H9B0.41910.87421.18690.110*
H9C0.55730.80301.20350.110*
O10.34589 (17)0.54785 (12)1.10374 (10)0.0571 (4)
O20.1739 (2)0.42886 (14)0.92727 (11)0.0697 (4)
N2−0.03335 (19)0.33131 (15)0.69754 (12)0.0514 (4)
H20.03410.34550.76350.062*
C10−0.0692 (3)0.43124 (19)0.65748 (16)0.0532 (5)
C11−0.1793 (3)0.3672 (2)0.54923 (17)0.0581 (5)
H11−0.22370.41200.50120.070*
C12−0.2140 (2)0.22325 (19)0.52282 (15)0.0511 (5)
C13−0.1210 (2)0.20295 (18)0.61697 (14)0.0470 (4)
C14−0.3308 (3)0.1161 (2)0.41335 (16)0.0666 (6)
H14A−0.26760.06060.38290.100*
H14B−0.36000.16280.35800.100*
H14C−0.43970.05640.42900.100*
C150.0049 (3)0.58075 (19)0.72855 (18)0.0681 (6)
H15A−0.06670.59100.78370.102*
H15B0.00180.64070.67910.102*
H15C0.12700.60630.76840.102*
C16−0.1000 (3)0.08222 (19)0.64427 (15)0.0525 (5)
C17−0.1825 (3)−0.16323 (19)0.58381 (18)0.0635 (5)
H17A−0.2223−0.17720.65380.076*
H17B−0.0591−0.15650.59330.076*
C18−0.3012 (3)−0.2831 (2)0.4826 (2)0.0777 (7)
H18A−0.4226−0.28800.47340.116*
H18B−0.2979−0.36910.49530.116*
H18C−0.2593−0.26900.41410.116*
O3−0.19388 (17)−0.03673 (13)0.56183 (10)0.0574 (4)
O4−0.0063 (2)0.08520 (14)0.73228 (12)0.0806 (5)
U11U22U33U12U13U23
N10.0640 (10)0.0477 (9)0.0397 (8)0.0212 (8)0.0025 (7)0.0053 (7)
C10.0532 (10)0.0434 (10)0.0407 (9)0.0155 (8)0.0037 (8)0.0055 (8)
C20.0575 (11)0.0533 (11)0.0445 (10)0.0198 (9)0.0041 (8)0.0099 (8)
C30.0759 (14)0.0568 (12)0.0565 (12)0.0307 (11)0.0067 (10)0.0189 (10)
C40.0674 (12)0.0478 (11)0.0552 (11)0.0256 (9)0.0123 (9)0.0133 (9)
C50.0935 (16)0.0467 (12)0.0772 (15)0.0282 (11)0.0119 (12)0.0069 (10)
C60.0797 (15)0.0690 (14)0.0472 (11)0.0236 (11)−0.0088 (10)0.0103 (10)
C70.0534 (11)0.0470 (11)0.0408 (10)0.0160 (8)0.0037 (8)0.0059 (8)
C80.0741 (13)0.0482 (11)0.0566 (12)0.0256 (10)0.0108 (10)0.0124 (9)
C90.0911 (16)0.0509 (12)0.0669 (14)0.0229 (11)0.0142 (12)0.0014 (10)
O10.0726 (9)0.0436 (7)0.0455 (7)0.0207 (6)−0.0015 (6)0.0050 (6)
O20.0918 (11)0.0559 (8)0.0498 (8)0.0314 (8)−0.0130 (7)0.0039 (6)
N20.0561 (9)0.0459 (9)0.0428 (8)0.0157 (7)0.0011 (7)0.0061 (7)
C100.0583 (11)0.0456 (11)0.0535 (11)0.0191 (9)0.0097 (9)0.0126 (9)
C110.0639 (12)0.0531 (12)0.0538 (11)0.0222 (9)0.0002 (9)0.0166 (9)
C120.0511 (10)0.0515 (11)0.0439 (10)0.0166 (9)0.0035 (8)0.0089 (8)
C130.0496 (10)0.0423 (10)0.0403 (9)0.0133 (8)0.0035 (8)0.0050 (7)
C140.0691 (13)0.0649 (13)0.0491 (11)0.0186 (11)−0.0086 (10)0.0081 (10)
C150.0796 (15)0.0451 (12)0.0702 (13)0.0218 (10)0.0066 (11)0.0068 (10)
C160.0580 (11)0.0476 (11)0.0426 (10)0.0169 (9)0.0017 (9)0.0050 (8)
C170.0701 (13)0.0484 (12)0.0643 (13)0.0226 (10)0.0037 (10)0.0073 (10)
C180.0850 (16)0.0475 (12)0.0825 (16)0.0204 (11)0.0047 (12)−0.0019 (11)
O30.0664 (8)0.0428 (7)0.0508 (8)0.0179 (6)−0.0027 (6)0.0029 (6)
O40.1088 (12)0.0548 (9)0.0572 (9)0.0290 (8)−0.0237 (8)0.0037 (7)
N1—C41.346 (2)N2—C101.348 (2)
N1—C11.380 (2)N2—C131.380 (2)
N1—H10.8600N2—H20.8600
C1—C21.384 (2)C10—C111.373 (3)
C1—C71.440 (2)C10—C151.498 (2)
C2—C31.404 (3)C11—C121.405 (2)
C2—C61.498 (3)C11—H110.9300
C3—C41.369 (3)C12—C131.378 (2)
C3—H30.9300C12—C141.500 (2)
C4—C51.498 (3)C13—C161.438 (3)
C5—H5A0.9600C14—H14A0.9600
C5—H5B0.9600C14—H14B0.9600
C5—H5C0.9600C14—H14C0.9600
C6—H6A0.9600C15—H15A0.9600
C6—H6B0.9600C15—H15B0.9600
C6—H6C0.9600C15—H15C0.9600
C7—O21.212 (2)C16—O41.213 (2)
C7—O11.336 (2)C16—O31.333 (2)
C8—O11.443 (2)C17—O31.444 (2)
C8—C91.504 (3)C17—C181.497 (3)
C8—H8A0.9700C17—H17A0.9700
C8—H8B0.9700C17—H17B0.9700
C9—H9A0.9600C18—H18A0.9600
C9—H9B0.9600C18—H18B0.9600
C9—H9C0.9600C18—H18C0.9600
C4—N1—C1109.98 (15)C10—N2—C13109.89 (15)
C4—N1—H1125.0C10—N2—H2125.1
C1—N1—H1125.0C13—N2—H2125.1
N1—C1—C2107.62 (15)N2—C10—C11107.26 (16)
N1—C1—C7119.00 (15)N2—C10—C15121.47 (17)
C2—C1—C7133.38 (16)C11—C10—C15131.26 (18)
C1—C2—C3105.90 (16)C10—C11—C12108.90 (17)
C1—C2—C6127.36 (17)C10—C11—H11125.6
C3—C2—C6126.73 (17)C12—C11—H11125.6
C4—C3—C2109.18 (17)C13—C12—C11106.15 (16)
C4—C3—H3125.4C13—C12—C14128.26 (17)
C2—C3—H3125.4C11—C12—C14125.59 (17)
N1—C4—C3107.32 (16)C12—C13—N2107.79 (15)
N1—C4—C5121.31 (18)C12—C13—C16133.95 (16)
C3—C4—C5131.37 (19)N2—C13—C16118.26 (15)
C4—C5—H5A109.5C12—C14—H14A109.5
C4—C5—H5B109.5C12—C14—H14B109.5
H5A—C5—H5B109.5H14A—C14—H14B109.5
C4—C5—H5C109.5C12—C14—H14C109.5
H5A—C5—H5C109.5H14A—C14—H14C109.5
H5B—C5—H5C109.5H14B—C14—H14C109.5
C2—C6—H6A109.5C10—C15—H15A109.5
C2—C6—H6B109.5C10—C15—H15B109.5
H6A—C6—H6B109.5H15A—C15—H15B109.5
C2—C6—H6C109.5C10—C15—H15C109.5
H6A—C6—H6C109.5H15A—C15—H15C109.5
H6B—C6—H6C109.5H15B—C15—H15C109.5
O2—C7—O1122.56 (16)O4—C16—O3121.97 (17)
O2—C7—C1124.92 (16)O4—C16—C13124.71 (16)
O1—C7—C1112.52 (15)O3—C16—C13113.32 (15)
O1—C8—C9106.73 (15)O3—C17—C18107.56 (16)
O1—C8—H8A110.4O3—C17—H17A110.2
C9—C8—H8A110.4C18—C17—H17A110.2
O1—C8—H8B110.4O3—C17—H17B110.2
C9—C8—H8B110.4C18—C17—H17B110.2
H8A—C8—H8B108.6H17A—C17—H17B108.5
C8—C9—H9A109.5C17—C18—H18A109.5
C8—C9—H9B109.5C17—C18—H18B109.5
H9A—C9—H9B109.5H18A—C18—H18B109.5
C8—C9—H9C109.5C17—C18—H18C109.5
H9A—C9—H9C109.5H18A—C18—H18C109.5
H9B—C9—H9C109.5H18B—C18—H18C109.5
C7—O1—C8116.76 (13)C16—O3—C17116.64 (14)
C4—N1—C1—C20.3 (2)C13—N2—C10—C11−0.8 (2)
C4—N1—C1—C7179.58 (15)C13—N2—C10—C15178.44 (16)
N1—C1—C2—C3−0.4 (2)N2—C10—C11—C120.8 (2)
C7—C1—C2—C3−179.57 (19)C15—C10—C11—C12−178.28 (19)
N1—C1—C2—C6178.72 (18)C10—C11—C12—C13−0.6 (2)
C7—C1—C2—C6−0.4 (3)C10—C11—C12—C14179.03 (18)
C1—C2—C3—C40.4 (2)C11—C12—C13—N20.1 (2)
C6—C2—C3—C4−178.74 (19)C14—C12—C13—N2−179.49 (17)
C1—N1—C4—C30.0 (2)C11—C12—C13—C16−179.8 (2)
C1—N1—C4—C5−179.76 (16)C14—C12—C13—C160.6 (3)
C2—C3—C4—N1−0.3 (2)C10—N2—C13—C120.4 (2)
C2—C3—C4—C5179.4 (2)C10—N2—C13—C16−179.68 (15)
N1—C1—C7—O21.0 (3)C12—C13—C16—O4177.7 (2)
C2—C1—C7—O2−179.9 (2)N2—C13—C16—O4−2.2 (3)
N1—C1—C7—O1−179.56 (14)C12—C13—C16—O3−1.7 (3)
C2—C1—C7—O1−0.5 (3)N2—C13—C16—O3178.41 (15)
O2—C7—O1—C80.4 (3)O4—C16—O3—C171.7 (3)
C1—C7—O1—C8−178.98 (15)C13—C16—O3—C17−178.86 (15)
C9—C8—O1—C7−178.86 (15)C18—C17—O3—C16178.37 (16)
D—H···AD—HH···AD···AD—H···A
N1—H1···O40.862.022.857 (2)166.
N2—H2···O20.862.002.834 (2)163.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O40.862.022.857 (2)166
N2—H2⋯O20.862.002.834 (2)163
  3 in total

1.  Ethyl 3,5-dimethyl-4-phenyl-1H-pyrrole-2-carboxylate.

Authors:  José António Paixão; Manuela Ramos Silva; Ana Matos Beja; Ab ílio J F N Sobral A; Susana H Lopes; A M d'A Rocha Gonsalves
Journal:  Acta Crystallogr C       Date:  2002-11-26       Impact factor: 1.172

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Ethyl 4-dodecyl-3,5-dimethyl-1H-pyrrole-2-carboxylate: intermolecular interactions in an amphiphilic pyrrole.

Authors:  Manuela Ramos Silva; Ana Matos Beja; Jose Antonio Paixão; Abilio J F N Sobral; Susana H Lopes; A M d'A Rocha Gonsalves
Journal:  Acta Crystallogr C       Date:  2002-08-31       Impact factor: 1.172

  3 in total

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