Literature DB >> 21201175

2-(2,3,5,6-Tetra-methyl-benzyl-sulfan-yl)pyridine N-oxide.

B Ravindran Durai Nayagam, Samuel Robinson Jebas, J Jebaraj Devadasan, Dieter Schollmeyer.   

Abstract

In the title compound, C(16)H(19)NOS, the durene ring and the oxopyridyl ring form a dihedral angle of 82.26 (7)°. The crystal structure is stabilized by inter-molecular C-H⋯O hydrogen bonds, weak C-H⋯π inter-actions and π-π inter-actions [centroid-centroid distance of 3.4432 (19) Å], together with intra-molecular S⋯O [2.657 (2) Å] short contacts.

Entities:  

Year:  2008        PMID: 21201175      PMCID: PMC2959274          DOI: 10.1107/S1600536808029747

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For bond-length data, see: Allen et al. (1987 ▶). For biological activities of N-oxide derivatives see: Bovin et al. (1992 ▶); Katsuyuki et al. (1991 ▶). Leonard et al. (1955 ▶); Lobana & Bhatia (1989 ▶); Symons & West (1985 ▶). For related literature, see: Jebas et al. (2005 ▶); Ravindran Durai Nayagam et al. (2008 ▶).

Experimental

Crystal data

C16H19NOS M = 273.38 Monoclinic, a = 16.601 (6) Å b = 9.1562 (8) Å c = 9.696 (4) Å β = 106.098 (16)° V = 1416.1 (7) Å3 Z = 4 Cu Kα radiation μ = 1.95 mm−1 T = 193 (2) K 0.51 × 0.38 × 0.03 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: ψ scan (CORINC; Dräger & Gattow, 1971 ▶) T min = 0.480, T max = 0.960 2848 measured reflections 2672 independent reflections 2322 reflections with I > 2σ(I) R int = 0.064 3 standard reflections frequency: 60 min intensity decay: 2%

Refinement

R[F 2 > 2σ(F 2)] = 0.050 wR(F 2) = 0.144 S = 1.05 2672 reflections 176 parameters H-atom parameters constrained Δρmax = 0.36 e Å−3 Δρmin = −0.34 e Å−3 Data collection: CAD-4 Software (Enraf–Nonius, 1989 ▶); cell refinement: CAD-4 Software; data reduction: CORINC (Dräger & Gattow, 1971 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL and PLATON (Spek, 2003 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808029747/sg2262sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808029747/sg2262Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H19NOSF(000) = 584
Mr = 273.38Dx = 1.282 Mg m3
Monoclinic, P21/cCu Kα radiation, λ = 1.54178 Å
Hall symbol: -P 2ybcCell parameters from 25 reflections
a = 16.601 (6) Åθ = 36–45°
b = 9.1562 (8) ŵ = 1.95 mm1
c = 9.696 (4) ÅT = 193 K
β = 106.098 (16)°Plate, colourless
V = 1416.1 (7) Å30.51 × 0.38 × 0.03 mm
Z = 4
Enraf–Nonius CAD-4 diffractometer2322 reflections with I > 2σ(I)
Radiation source: rotating anodeRint = 0.064
graphiteθmax = 69.9°, θmin = 2.8°
ω/2θ scansh = −19→20
Absorption correction: ψ scan (CORINC; Dräger & Gattow, 1971)k = −11→0
Tmin = 0.48, Tmax = 0.96l = −11→0
2848 measured reflections3 standard reflections every 60 min
2672 independent reflections intensity decay: 2%
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.050Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.144H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0919P)2 + 0.3984P] where P = (Fo2 + 2Fc2)/3
2672 reflections(Δ/σ)max < 0.001
176 parametersΔρmax = 0.36 e Å3
0 restraintsΔρmin = −0.34 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.37023 (12)0.4717 (2)0.5511 (2)0.0350 (4)
C20.34830 (13)0.5167 (2)0.4094 (2)0.0410 (5)
H20.30540.46680.34000.049*
C30.38878 (15)0.6342 (3)0.3689 (3)0.0482 (6)
H30.37450.66470.27150.058*
C40.45024 (14)0.7067 (2)0.4716 (3)0.0468 (5)
H40.47750.78920.44560.056*
C50.47167 (14)0.6594 (2)0.6111 (3)0.0445 (5)
H50.51410.70920.68140.053*
N60.43286 (11)0.54200 (19)0.65006 (19)0.0382 (4)
O70.45448 (11)0.49322 (19)0.78177 (17)0.0531 (4)
S80.32907 (3)0.32912 (5)0.62989 (5)0.0394 (2)
C90.24486 (13)0.2652 (2)0.4783 (2)0.0392 (5)
H9A0.20730.34710.43540.047*
H9B0.26810.22260.40370.047*
C100.19752 (13)0.1513 (2)0.5361 (2)0.0351 (4)
C110.13472 (12)0.1944 (2)0.5995 (2)0.0381 (5)
C120.09035 (13)0.0877 (3)0.6508 (2)0.0453 (5)
C130.11026 (15)−0.0575 (3)0.6389 (3)0.0516 (6)
H130.0796−0.12970.67330.062*
C140.17289 (15)−0.1027 (2)0.5791 (3)0.0464 (5)
C150.21801 (13)0.0032 (2)0.5273 (2)0.0389 (5)
C160.11488 (16)0.3533 (3)0.6159 (3)0.0528 (6)
H16A0.05810.37480.55590.079*
H16B0.15530.41460.58570.079*
H16C0.11830.37360.71660.079*
C170.02163 (17)0.1289 (4)0.7180 (3)0.0671 (8)
H17A−0.00160.04030.74880.101*
H17B−0.02280.18120.64750.101*
H17C0.04470.19200.80130.101*
C180.1893 (2)−0.2643 (3)0.5698 (4)0.0711 (8)
H18A0.1825−0.29130.46940.107*
H18B0.1494−0.31970.60720.107*
H18C0.2466−0.28660.62670.107*
C190.28812 (17)−0.0409 (3)0.4648 (3)0.0552 (6)
H19A0.2969−0.14670.47500.083*
H19B0.33970.00990.51580.083*
H19C0.2733−0.01470.36280.083*
U11U22U33U12U13U23
C10.0376 (10)0.0298 (9)0.0427 (11)0.0045 (8)0.0200 (8)−0.0011 (8)
C20.0424 (11)0.0396 (11)0.0453 (12)0.0042 (9)0.0192 (9)0.0034 (9)
C30.0505 (12)0.0450 (12)0.0568 (14)0.0085 (10)0.0277 (11)0.0131 (11)
C40.0454 (12)0.0355 (11)0.0695 (15)0.0044 (9)0.0327 (11)0.0055 (11)
C50.0434 (11)0.0348 (11)0.0628 (14)−0.0024 (8)0.0272 (11)−0.0073 (10)
N60.0417 (9)0.0343 (9)0.0433 (9)0.0019 (7)0.0198 (8)−0.0047 (7)
O70.0648 (10)0.0532 (10)0.0401 (9)−0.0085 (8)0.0127 (8)−0.0019 (7)
S80.0464 (3)0.0368 (3)0.0370 (3)−0.0043 (2)0.0148 (2)0.00324 (19)
C90.0447 (11)0.0371 (10)0.0373 (11)−0.0016 (9)0.0136 (9)0.0028 (8)
C100.0381 (10)0.0317 (10)0.0369 (10)0.0011 (8)0.0129 (8)0.0012 (8)
C110.0357 (10)0.0398 (11)0.0387 (11)0.0043 (8)0.0102 (8)−0.0032 (9)
C120.0383 (11)0.0557 (13)0.0437 (12)−0.0067 (10)0.0143 (9)−0.0040 (10)
C130.0505 (13)0.0501 (13)0.0531 (14)−0.0177 (10)0.0128 (11)0.0048 (11)
C140.0513 (13)0.0323 (11)0.0504 (13)−0.0048 (9)0.0054 (10)0.0021 (9)
C150.0419 (10)0.0345 (10)0.0397 (11)0.0052 (8)0.0104 (9)−0.0011 (8)
C160.0548 (13)0.0453 (13)0.0585 (15)0.0141 (11)0.0160 (12)−0.0079 (11)
C170.0470 (13)0.101 (2)0.0612 (16)−0.0133 (14)0.0274 (12)−0.0137 (16)
C180.084 (2)0.0320 (12)0.087 (2)−0.0009 (12)0.0070 (17)0.0041 (13)
C190.0612 (14)0.0486 (13)0.0611 (15)0.0143 (11)0.0256 (12)−0.0044 (12)
C1—N61.365 (3)C12—C131.383 (4)
C1—C21.382 (3)C12—C171.510 (3)
C1—S81.745 (2)C13—C141.387 (4)
C2—C31.382 (3)C13—H130.9500
C2—H20.9500C14—C151.401 (3)
C3—C41.382 (4)C14—C181.511 (3)
C3—H30.9500C15—C191.509 (3)
C4—C51.370 (3)C16—H16A0.9800
C4—H40.9500C16—H16B0.9800
C5—N61.360 (3)C16—H16C0.9800
C5—H50.9500C17—H17A0.9800
N6—O71.306 (2)C17—H17B0.9800
S8—C91.821 (2)C17—H17C0.9800
C9—C101.505 (3)C18—H18A0.9800
C9—H9A0.9900C18—H18B0.9800
C9—H9B0.9900C18—H18C0.9800
C10—C111.406 (3)C19—H19A0.9800
C10—C151.406 (3)C19—H19B0.9800
C11—C121.395 (3)C19—H19C0.9800
C11—C161.510 (3)
N6—C1—C2119.84 (19)C12—C13—C14123.1 (2)
N6—C1—S8111.06 (15)C12—C13—H13118.4
C2—C1—S8129.10 (17)C14—C13—H13118.4
C3—C2—C1120.0 (2)C13—C14—C15118.7 (2)
C3—C2—H2120.0C13—C14—C18119.1 (2)
C1—C2—H2120.0C15—C14—C18122.2 (2)
C2—C3—C4119.3 (2)C14—C15—C10118.9 (2)
C2—C3—H3120.4C14—C15—C19120.5 (2)
C4—C3—H3120.4C10—C15—C19120.6 (2)
C5—C4—C3119.8 (2)C11—C16—H16A109.5
C5—C4—H4120.1C11—C16—H16B109.5
C3—C4—H4120.1H16A—C16—H16B109.5
N6—C5—C4120.7 (2)C11—C16—H16C109.5
N6—C5—H5119.6H16A—C16—H16C109.5
C4—C5—H5119.6H16B—C16—H16C109.5
O7—N6—C5121.28 (19)C12—C17—H17A109.5
O7—N6—C1118.40 (17)C12—C17—H17B109.5
C5—N6—C1120.32 (19)H17A—C17—H17B109.5
C1—S8—C9101.13 (10)C12—C17—H17C109.5
C10—C9—S8106.60 (14)H17A—C17—H17C109.5
C10—C9—H9A110.4H17B—C17—H17C109.5
S8—C9—H9A110.4C14—C18—H18A109.5
C10—C9—H9B110.4C14—C18—H18B109.5
S8—C9—H9B110.4H18A—C18—H18B109.5
H9A—C9—H9B108.6C14—C18—H18C109.5
C11—C10—C15121.22 (19)H18A—C18—H18C109.5
C11—C10—C9119.71 (19)H18B—C18—H18C109.5
C15—C10—C9119.07 (19)C15—C19—H19A109.5
C12—C11—C10119.2 (2)C15—C19—H19B109.5
C12—C11—C16119.0 (2)H19A—C19—H19B109.5
C10—C11—C16121.7 (2)C15—C19—H19C109.5
C13—C12—C11118.7 (2)H19A—C19—H19C109.5
C13—C12—C17120.2 (2)H19B—C19—H19C109.5
C11—C12—C17121.1 (2)
N6—C1—C2—C3−1.1 (3)C15—C10—C11—C16177.1 (2)
S8—C1—C2—C3179.56 (16)C9—C10—C11—C16−1.9 (3)
C1—C2—C3—C4−0.9 (3)C10—C11—C12—C130.6 (3)
C2—C3—C4—C51.6 (3)C16—C11—C12—C13−178.4 (2)
C3—C4—C5—N6−0.3 (3)C10—C11—C12—C17−179.2 (2)
C4—C5—N6—O7177.93 (19)C16—C11—C12—C171.8 (3)
C4—C5—N6—C1−1.7 (3)C11—C12—C13—C140.5 (4)
C2—C1—N6—O7−177.22 (18)C17—C12—C13—C14−179.7 (2)
S8—C1—N6—O72.2 (2)C12—C13—C14—C15−0.4 (4)
C2—C1—N6—C52.5 (3)C12—C13—C14—C18−179.5 (2)
S8—C1—N6—C5−178.13 (14)C13—C14—C15—C10−0.8 (3)
N6—C1—S8—C9176.64 (14)C18—C14—C15—C10178.2 (2)
C2—C1—S8—C9−4.0 (2)C13—C14—C15—C19178.5 (2)
C1—S8—C9—C10−173.92 (14)C18—C14—C15—C19−2.5 (4)
S8—C9—C10—C1183.9 (2)C11—C10—C15—C142.0 (3)
S8—C9—C10—C15−95.2 (2)C9—C10—C15—C14−178.98 (19)
C15—C10—C11—C12−1.9 (3)C11—C10—C15—C19−177.3 (2)
C9—C10—C11—C12179.06 (19)C9—C10—C15—C191.8 (3)
D—H···AD—HH···AD···AD—H···A
C4—H4···O7i0.952.513.319 (3)143.
C2—H2···Cg2ii0.952.983.853 (3)154
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C4—H4⋯O7i0.952.513.319 (3)143
C2—H2⋯Cg2ii0.952.983.853 (3)154

Symmetry codes: (i) ; (ii) . Cg2 is the centroid of the C10–C15 ring.

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  2,2'-[2,3,5,6-Tetra-methyl-p-phenyl-ene-bis(methyl-enethio)]bis-(pyridine N-oxide).

Authors:  B Ravindran Durai Nayagam; Samuel Robinson Jebas; Selvarathi Grace; Dieter Schollmeyer
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-01-09
  2 in total

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