Literature DB >> 21201165

(2E,5E)-2,5-Bis(3,4,5-trimethoxy-benzyl-idene)cyclo-penta-none.

Yi-Feng Sun, Yang Liu, Feng-Yu Zhang, Hong-Ji Chen, Yi-Ping Cui.   

Abstract

The title compound, C(25)H(28)O(7), was prepared by the base-catalysed reaction of 3,4,5-trimethoxy-benzaldehyde with cyclo-penta-none. The mol-ecule has crystallographic twofold rotation symmetry and adopts an E-configuration about the central olefinic bonds. The two benzene rings and the central cyclo-penta-none ring are almost coplanar [dihedral angle = 4.7 (2)°].

Entities:  

Year:  2008        PMID: 21201165      PMCID: PMC2959310          DOI: 10.1107/S1600536808029474

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background literature, see: Guilford et al. (1999 ▶); Xue et al. (2008 ▶); Wu et al. (2008 ▶); Das et al. (2008 ▶). For related crystal structures, see: Sun & Cui (2007 ▶); Du et al. (2007 ▶); Wei et al. (2008 ▶).

Experimental

Crystal data

C25H28O7 M = 440.47 Monoclinic, a = 18.573 (4) Å b = 15.231 (3) Å c = 8.8460 (18) Å β = 113.99 (3)° V = 2286.2 (10) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 293 (2) K 0.30 × 0.20 × 0.20 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.973, T max = 0.982 2123 measured reflections 2058 independent reflections 1422 reflections with I > 2σ(I) R int = 0.048 3 standard reflections every 200 reflections intensity decay: none

Refinement

R[F 2 > 2σ(F 2)] = 0.055 wR(F 2) = 0.164 S = 1.00 2058 reflections 146 parameters H-atom parameters constrained Δρmax = 0.21 e Å−3 Δρmin = −0.27 e Å−3 Data collection: CAD-4 Software (Enraf–Nonius, 1989 ▶); cell refinement: CAD-4 Software; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808029474/fj2151sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808029474/fj2151Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C25H28O7F(000) = 936
Mr = 440.47Dx = 1.280 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 25 reflections
a = 18.573 (4) Åθ = 10–13°
b = 15.231 (3) ŵ = 0.09 mm1
c = 8.8460 (18) ÅT = 293 K
β = 113.99 (3)°Block, yellow
V = 2286.2 (10) Å30.30 × 0.20 × 0.20 mm
Z = 4
Enraf–Nonius CAD-4 diffractometer1422 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.048
graphiteθmax = 25.2°, θmin = 1.8°
ω/2θ scansh = −22→20
Absorption correction: ψ scan (North et al., 1968)k = 0→18
Tmin = 0.973, Tmax = 0.982l = 0→10
2123 measured reflections3 standard reflections every 200 reflections
2058 independent reflections intensity decay: none
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.055Hydrogen site location: difference Fourier map
wR(F2) = 0.164H-atom parameters constrained
S = 1.00w = 1/[σ2(Fo2) + (0.080P)2 + 2.P] where P = (Fo2 + 2Fc2)/3
2058 reflections(Δ/σ)max < 0.001
146 parametersΔρmax = 0.21 e Å3
0 restraintsΔρmin = −0.27 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.50000.43398 (16)0.25000.0707 (8)
C10.50000.3537 (2)0.25000.0510 (8)
C20.47174 (14)0.29645 (15)0.3510 (3)0.0480 (6)
O20.36310 (14)0.07554 (11)0.6941 (3)0.0806 (7)
O30.32676 (10)0.18198 (11)0.89316 (19)0.0592 (5)
C30.47864 (15)0.20225 (14)0.3086 (3)0.0512 (6)
H3A0.42680.17600.25460.061*
H3B0.50850.16900.40800.061*
O40.33734 (12)0.35568 (11)0.8758 (2)0.0683 (6)
C40.44589 (14)0.33133 (16)0.4587 (3)0.0517 (6)
H4A0.44890.39220.46650.062*
C50.41371 (14)0.28904 (15)0.5662 (3)0.0473 (6)
C60.39179 (15)0.34335 (15)0.6677 (3)0.0526 (6)
H6A0.39790.40380.66480.063*
C70.36086 (14)0.30734 (16)0.7728 (3)0.0504 (6)
C80.35313 (13)0.21799 (15)0.7816 (3)0.0478 (6)
C90.37410 (15)0.16327 (15)0.6797 (3)0.0542 (6)
C100.40400 (15)0.19887 (16)0.5729 (3)0.0555 (6)
H10A0.41770.16200.50500.067*
C110.3772 (3)0.01797 (19)0.5835 (5)0.1075 (13)
H11A0.3679−0.04140.60710.161*
H11B0.43090.02400.59650.161*
H11C0.34250.03230.47180.161*
C120.24333 (17)0.1766 (2)0.8306 (4)0.0739 (8)
H12A0.22840.15070.91260.111*
H12B0.22390.14100.73260.111*
H12C0.22120.23450.80440.111*
C130.3430 (2)0.44758 (18)0.8706 (4)0.0886 (11)
H13A0.32490.47350.94780.133*
H13B0.31110.46810.76110.133*
H13C0.39690.46390.89950.133*
U11U22U33U12U13U23
O10.118 (2)0.0480 (15)0.0791 (18)0.0000.0745 (17)0.000
C10.074 (2)0.048 (2)0.0498 (18)0.0000.0438 (17)0.000
C20.0656 (14)0.0492 (13)0.0459 (12)−0.0033 (10)0.0397 (11)−0.0017 (10)
O20.1371 (18)0.0460 (11)0.0952 (15)−0.0030 (10)0.0846 (14)0.0043 (9)
O30.0752 (12)0.0681 (11)0.0527 (10)−0.0055 (9)0.0450 (9)0.0105 (8)
C30.0719 (16)0.0494 (13)0.0494 (13)−0.0013 (11)0.0422 (12)0.0001 (10)
O40.1063 (14)0.0569 (11)0.0782 (12)−0.0088 (9)0.0749 (12)−0.0123 (9)
C40.0734 (16)0.0497 (14)0.0515 (13)0.0006 (11)0.0452 (12)0.0011 (10)
C50.0631 (14)0.0482 (13)0.0463 (12)−0.0029 (10)0.0384 (11)−0.0005 (10)
C60.0770 (16)0.0447 (13)0.0575 (14)−0.0010 (11)0.0493 (13)0.0004 (10)
C70.0666 (15)0.0550 (14)0.0474 (12)−0.0045 (11)0.0414 (12)−0.0058 (10)
C80.0585 (14)0.0542 (14)0.0433 (12)−0.0037 (11)0.0336 (11)0.0049 (10)
C90.0779 (17)0.0449 (13)0.0564 (14)−0.0038 (11)0.0443 (13)0.0040 (11)
C100.0807 (17)0.0506 (14)0.0556 (14)0.0013 (12)0.0487 (13)−0.0018 (11)
C110.188 (4)0.0482 (18)0.130 (3)−0.005 (2)0.109 (3)−0.0127 (18)
C120.0775 (19)0.085 (2)0.0795 (19)−0.0150 (15)0.0526 (16)0.0035 (16)
C130.149 (3)0.0538 (17)0.108 (2)−0.0021 (18)0.098 (2)−0.0120 (16)
O1—C11.222 (4)C5—C61.398 (3)
C1—C21.489 (3)C6—C71.389 (3)
C1—C2i1.489 (3)C6—H6A0.9300
C2—C41.339 (3)C7—C81.374 (3)
C2—C31.501 (3)C8—C91.395 (3)
O2—C91.365 (3)C9—C101.386 (3)
O2—C111.415 (3)C10—H10A0.9300
O3—C81.381 (2)C11—H11A0.9600
O3—C121.420 (3)C11—H11B0.9600
C3—C3i1.541 (4)C11—H11C0.9600
C3—H3A0.9700C12—H12A0.9600
C3—H3B0.9700C12—H12B0.9600
O4—C71.373 (3)C12—H12C0.9600
O4—C131.406 (3)C13—H13A0.9600
C4—C51.462 (3)C13—H13B0.9600
C4—H4A0.9300C13—H13C0.9600
C5—C101.390 (3)
O1—C1—C2125.87 (13)C7—C8—O3120.62 (19)
O1—C1—C2i125.87 (13)C7—C8—C9119.49 (19)
C2—C1—C2i108.3 (3)O3—C8—C9119.9 (2)
C4—C2—C1120.7 (2)O2—C9—C10124.2 (2)
C4—C2—C3130.4 (2)O2—C9—C8115.7 (2)
C1—C2—C3108.86 (18)C10—C9—C8120.1 (2)
C9—O2—C11117.7 (2)C9—C10—C5120.7 (2)
C8—O3—C12113.10 (19)C9—C10—H10A119.7
C2—C3—C3i106.72 (11)C5—C10—H10A119.7
C2—C3—H3A110.4O2—C11—H11A109.5
C3i—C3—H3A110.4O2—C11—H11B109.5
C2—C3—H3B110.4H11A—C11—H11B109.5
C3i—C3—H3B110.4O2—C11—H11C109.5
H3A—C3—H3B108.6H11A—C11—H11C109.5
C7—O4—C13117.66 (19)H11B—C11—H11C109.5
C2—C4—C5130.4 (2)O3—C12—H12A109.5
C2—C4—H4A114.8O3—C12—H12B109.5
C5—C4—H4A114.8H12A—C12—H12B109.5
C10—C5—C6118.77 (19)O3—C12—H12C109.5
C10—C5—C4123.87 (19)H12A—C12—H12C109.5
C6—C5—C4117.4 (2)H12B—C12—H12C109.5
C7—C6—C5120.3 (2)O4—C13—H13A109.5
C7—C6—H6A119.9O4—C13—H13B109.5
C5—C6—H6A119.9H13A—C13—H13B109.5
O4—C7—C8115.13 (18)O4—C13—H13C109.5
O4—C7—C6124.2 (2)H13A—C13—H13C109.5
C8—C7—C6120.7 (2)H13B—C13—H13C109.5
O1—C1—C2—C4−2.7 (3)O4—C7—C8—O3−2.8 (3)
C2i—C1—C2—C4177.3 (3)C6—C7—C8—O3176.1 (2)
O1—C1—C2—C3177.49 (12)O4—C7—C8—C9178.8 (2)
C2i—C1—C2—C3−2.51 (12)C6—C7—C8—C9−2.2 (4)
C4—C2—C3—C3i−173.4 (3)C12—O3—C8—C786.9 (3)
C1—C2—C3—C3i6.4 (3)C12—O3—C8—C9−94.7 (3)
C1—C2—C4—C5178.0 (2)C11—O2—C9—C10−5.3 (4)
C3—C2—C4—C5−2.2 (5)C11—O2—C9—C8174.8 (3)
C2—C4—C5—C10−0.3 (4)C7—C8—C9—O2−178.8 (2)
C2—C4—C5—C6179.6 (3)O3—C8—C9—O22.9 (4)
C10—C5—C6—C70.0 (4)C7—C8—C9—C101.3 (4)
C4—C5—C6—C7−180.0 (2)O3—C8—C9—C10−177.0 (2)
C13—O4—C7—C8−179.2 (3)O2—C9—C10—C5−179.7 (2)
C13—O4—C7—C61.8 (4)C8—C9—C10—C50.2 (4)
C5—C6—C7—O4−179.6 (2)C6—C5—C10—C9−0.8 (4)
C5—C6—C7—C81.6 (4)C4—C5—C10—C9179.1 (2)
Table 1

Selected torsion angles (°)

O1—C1—C2—C4−2.7 (3)
C1—C2—C4—C5178.0 (2)
C2—C4—C5—C6179.6 (3)
C13—O4—C7—C61.8 (4)
C12—O3—C8—C786.9 (3)
C11—O2—C9—C8174.8 (3)
  4 in total

1.  Synthesis, characterization, and structure-activity relationships of amidine-substituted (bis)benzylidene-cycloketone olefin isomers as potent and selective factor Xa inhibitors.

Authors:  W J Guilford; K J Shaw; J L Dallas; S Koovakkat; W Lee; A Liang; D R Light; M A McCarrick; M Whitlow; B Ye; M M Morrissey
Journal:  J Med Chem       Date:  1999-12-30       Impact factor: 7.446

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  3-(3,4,5-Trimethoxyphenyl)-1-oxo-2-propene: a novel pharmacophore displaying potent multidrug resistance reversal and selective cytotoxicity.

Authors:  Umashankar Das; Masami Kawase; Hiroshi Sakagami; Atsushi Ideo; Jun Shimada; Joseph Molnár; Zoltán Baráth; Zsuzsanna Bata; Jonathan R Dimmock
Journal:  Bioorg Med Chem       Date:  2007-03-13       Impact factor: 3.641

4.  (E,E)-2,5-Bis(4-tert-butyl-benzyl-idene)-cyclo-penta-none.

Authors:  Jian Wei; Guang Liang; Yuhong Gai; Jingmei Lu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-08-13
  4 in total

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