Literature DB >> 21201156

2-(Mesitylmethylsulfanyl)pyridine N-oxide monohydrate.

B Ravindran Durai Nayagam, Samuel Robinson Jebas, H Johnson Jeyakumar, Dieter Schollmeyer.   

Abstract

In the title compound, C(15)H(17)NOS·H(2)O, the benzene and pyridine rings form a dihedral angle of 71.18 (2)°. The intra-molecular S⋯O distance [2.737 (3) Å] is shorter than expected and, in terms of hybridization principles, the N-C-S angle [114.1 (2)°] is smaller than expected. The crystal structure is stabilized by inter-molecular O-H⋯O and weak C-H⋯O hydrogen bonds. In addition, weak π-π stacking inter-actions with a centroid-centroid distance of 3.778 (3) Å are also observed.

Entities:  

Year:  2008        PMID: 21201156      PMCID: PMC2959397          DOI: 10.1107/S1600536808029255

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Jebas et al. (2005 ▶); Hartung et al. (1996 ▶); Ravindran Durai Nayagam et al. (2008 ▶). For biological activities of N-oxide derivatives, see: Bovin et al. (1992 ▶); Katsuyuki et al. (1991 ▶); Leonard et al. (1955 ▶); Lobana & Bhatia (1989 ▶); Symons & West (1985 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C15H17NOS·H2O M = 277.37 Monoclinic, a = 12.358 (7) Å b = 15.404 (6) Å c = 7.748 (5) Å β = 106.40 (2)° V = 1415.0 (13) Å3 Z = 4 Cu Kα radiation μ = 2.01 mm−1 T = 193 (2) K 0.50 × 0.20 × 0.05 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: ψ scan (CORINC; Dräger & Gattow, 1971 ▶) T min = 0.67, T max = 0.99 (expected range = 0.612–0.904) 2896 measured reflections 2684 independent reflections 2048 reflections with I > 2σ(I) R int = 0.067 3 standard reflections frequency: 60 min intensity decay: 3%

Refinement

R[F 2 > 2σ(F 2)] = 0.067 wR(F 2) = 0.190 S = 1.06 2684 reflections 175 parameters H-atom parameters constrained Δρmax = 0.57 e Å−3 Δρmin = −0.79 e Å−3 Data collection: CAD-4 EXPRESS (Enraf–Nonius, 1994 ▶); cell refinement: CAD-4 EXPRESS; data reduction: CORINC (Dräger & Gattow, 1971 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL and PLATON (Spek, 2003 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808029255/lh2692sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808029255/lh2692Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H17NOS·H2OF(000) = 592
Mr = 277.37Dx = 1.302 Mg m3
Monoclinic, P21/cCu Kα radiation, λ = 1.54178 Å
Hall symbol: -P 2ybcCell parameters from 25 reflections
a = 12.358 (7) Åθ = 36–50°
b = 15.404 (6) ŵ = 2.01 mm1
c = 7.748 (5) ÅT = 193 K
β = 106.40 (2)°Plate, colourless
V = 1415.0 (13) Å30.50 × 0.20 × 0.05 mm
Z = 4
Enraf–Nonius CAD-4 diffractometer2048 reflections with I > 2σ(I)
Radiation source: rotating anodeRint = 0.067
graphiteθmax = 70.0°, θmin = 3.7°
ω/2θ scansh = −14→15
Absorption correction: ψ scan (CORINC; Dräger & Gattow, 1971)k = −18→0
Tmin = 0.67, Tmax = 0.99l = −9→0
2896 measured reflections3 standard reflections every 60 min
2684 independent reflections intensity decay: 3%
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.067Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.190H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.1179P)2 + 0.1489P] where P = (Fo2 + 2Fc2)/3
2684 reflections(Δ/σ)max < 0.001
175 parametersΔρmax = 0.58 e Å3
0 restraintsΔρmin = −0.79 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.0724 (3)−0.0867 (2)0.3741 (4)0.0305 (7)
C20.0757 (3)−0.1748 (2)0.4252 (4)0.0336 (7)
C3−0.0205 (3)−0.2249 (2)0.3573 (4)0.0375 (8)
H3−0.0199−0.28370.39460.045*
C4−0.1170 (3)−0.1924 (2)0.2377 (4)0.0376 (8)
C5−0.1186 (3)−0.1053 (2)0.1862 (4)0.0355 (7)
H5−0.1844−0.08180.10450.043*
C6−0.0247 (3)−0.05268 (19)0.2537 (4)0.0314 (7)
C70.1771 (3)−0.2149 (2)0.5531 (5)0.0469 (9)
H7A0.1954−0.18350.66780.070*
H7B0.2411−0.21170.50220.070*
H7C0.1612−0.27580.57330.070*
C8−0.2178 (4)−0.2507 (3)0.1647 (6)0.0561 (11)
H8A−0.2837−0.21530.10540.084*
H8B−0.2332−0.28330.26370.084*
H8C−0.2020−0.29130.07750.084*
C9−0.0327 (3)0.0412 (2)0.1961 (5)0.0379 (8)
H9A0.02470.05340.13410.057*
H9B−0.02020.07860.30220.057*
H9C−0.10780.05260.11440.057*
C100.1718 (3)−0.0290 (2)0.4538 (4)0.0354 (7)
H10A0.2203−0.05560.56530.042*
H10B0.14540.02800.48500.042*
S110.25245 (7)−0.01425 (5)0.29196 (10)0.0343 (3)
C120.3569 (3)0.05537 (19)0.4133 (4)0.0300 (7)
C130.3783 (3)0.0803 (2)0.5928 (4)0.0364 (7)
H130.33430.05670.66400.044*
C140.4623 (3)0.1386 (2)0.6672 (5)0.0454 (9)
H140.47650.15520.78970.054*
C150.5265 (3)0.1733 (2)0.5633 (6)0.0487 (9)
H150.58390.21470.61280.058*
C160.5057 (3)0.1469 (2)0.3886 (6)0.0446 (9)
H160.55010.16970.31710.053*
N170.4236 (2)0.08942 (17)0.3157 (4)0.0336 (6)
O180.4037 (2)0.06592 (17)0.1461 (3)0.0446 (6)
O1W0.6227 (3)0.0815 (2)0.0886 (4)0.0610 (8)
H1W0.55750.06900.09330.091*
H2W0.64950.03940.04520.091*
U11U22U33U12U13U23
C10.0458 (18)0.0265 (14)0.0256 (14)−0.0078 (13)0.0208 (14)−0.0057 (11)
C20.0497 (19)0.0286 (16)0.0288 (15)−0.0017 (14)0.0214 (14)−0.0011 (13)
C30.057 (2)0.0265 (15)0.0356 (17)−0.0102 (14)0.0246 (16)−0.0070 (13)
C40.0480 (19)0.0392 (17)0.0332 (16)−0.0162 (15)0.0239 (15)−0.0141 (14)
C50.0420 (18)0.0388 (18)0.0300 (16)−0.0035 (14)0.0171 (14)−0.0055 (13)
C60.0492 (19)0.0263 (15)0.0255 (14)−0.0026 (13)0.0217 (14)−0.0050 (12)
C70.058 (2)0.0377 (19)0.048 (2)0.0032 (17)0.0194 (18)0.0037 (16)
C80.062 (3)0.058 (2)0.055 (2)−0.030 (2)0.027 (2)−0.020 (2)
C90.060 (2)0.0264 (16)0.0334 (16)0.0007 (14)0.0230 (16)−0.0007 (12)
C100.0476 (19)0.0363 (16)0.0261 (15)−0.0109 (14)0.0167 (14)−0.0030 (13)
S110.0424 (5)0.0364 (5)0.0281 (4)−0.0087 (3)0.0164 (3)−0.0048 (3)
C120.0309 (15)0.0228 (14)0.0361 (16)0.0022 (12)0.0091 (13)0.0048 (12)
C130.0443 (18)0.0318 (16)0.0312 (16)0.0004 (14)0.0075 (14)0.0038 (13)
C140.046 (2)0.0403 (19)0.045 (2)0.0026 (16)0.0045 (17)−0.0067 (16)
C150.0396 (19)0.039 (2)0.068 (3)−0.0066 (15)0.0159 (18)−0.0110 (18)
C160.0367 (18)0.0357 (18)0.066 (2)−0.0061 (15)0.0230 (18)−0.0009 (17)
N170.0343 (14)0.0293 (13)0.0402 (15)0.0044 (11)0.0154 (12)0.0042 (11)
O180.0475 (15)0.0501 (15)0.0417 (14)−0.0042 (11)0.0213 (12)0.0012 (11)
O1W0.0589 (18)0.085 (2)0.0441 (15)−0.0134 (16)0.0233 (14)−0.0132 (15)
C1—C61.397 (5)C9—H9B0.9800
C1—C21.411 (4)C9—H9C0.9800
C1—C101.500 (4)C10—S111.823 (3)
C2—C31.390 (5)C10—H10A0.9900
C2—C71.494 (5)C10—H10B0.9900
C3—C41.381 (5)S11—C121.736 (3)
C3—H30.9500C12—N171.371 (4)
C4—C51.399 (5)C12—C131.394 (4)
C4—C81.509 (5)C13—C141.371 (5)
C5—C61.391 (5)C13—H130.9500
C5—H50.9500C14—C151.388 (6)
C6—C91.509 (4)C14—H140.9500
C7—H7A0.9800C15—C161.367 (6)
C7—H7B0.9800C15—H150.9500
C7—H7C0.9800C16—N171.345 (4)
C8—H8A0.9800C16—H160.9500
C8—H8B0.9800N17—O181.318 (4)
C8—H8C0.9800O1W—H1W0.8400
C9—H9A0.9800O1W—H2W0.8400
C6—C1—C2120.0 (3)C6—C9—H9B109.5
C6—C1—C10120.1 (3)H9A—C9—H9B109.5
C2—C1—C10119.9 (3)C6—C9—H9C109.5
C3—C2—C1118.3 (3)H9A—C9—H9C109.5
C3—C2—C7119.3 (3)H9B—C9—H9C109.5
C1—C2—C7122.4 (3)C1—C10—S11109.5 (2)
C4—C3—C2122.5 (3)C1—C10—H10A109.8
C4—C3—H3118.7S11—C10—H10A109.8
C2—C3—H3118.7C1—C10—H10B109.8
C3—C4—C5118.6 (3)S11—C10—H10B109.8
C3—C4—C8120.1 (3)H10A—C10—H10B108.2
C5—C4—C8121.3 (4)C12—S11—C1099.89 (16)
C6—C5—C4120.6 (3)N17—C12—C13118.1 (3)
C6—C5—H5119.7N17—C12—S11114.1 (2)
C4—C5—H5119.7C13—C12—S11127.8 (3)
C5—C6—C1120.0 (3)C14—C13—C12120.5 (3)
C5—C6—C9118.0 (3)C14—C13—H13119.7
C1—C6—C9122.0 (3)C12—C13—H13119.7
C2—C7—H7A109.5C13—C14—C15119.9 (4)
C2—C7—H7B109.5C13—C14—H14120.1
H7A—C7—H7B109.5C15—C14—H14120.1
C2—C7—H7C109.5C16—C15—C14118.8 (3)
H7A—C7—H7C109.5C16—C15—H15120.6
H7B—C7—H7C109.5C14—C15—H15120.6
C4—C8—H8A109.5N17—C16—C15121.4 (3)
C4—C8—H8B109.5N17—C16—H16119.3
H8A—C8—H8B109.5C15—C16—H16119.3
C4—C8—H8C109.5O18—N17—C16120.4 (3)
H8A—C8—H8C109.5O18—N17—C12118.2 (3)
H8B—C8—H8C109.5C16—N17—C12121.3 (3)
C6—C9—H9A109.5H1W—O1W—H2W109.5
C6—C1—C2—C3−2.0 (4)C6—C1—C10—S11−80.1 (3)
C10—C1—C2—C3176.0 (3)C2—C1—C10—S11101.9 (3)
C6—C1—C2—C7179.9 (3)C1—C10—S11—C12178.5 (2)
C10—C1—C2—C7−2.1 (5)C10—S11—C12—N17−170.9 (2)
C1—C2—C3—C42.3 (5)C10—S11—C12—C138.2 (3)
C7—C2—C3—C4−179.6 (3)N17—C12—C13—C141.3 (5)
C2—C3—C4—C5−1.5 (5)S11—C12—C13—C14−177.7 (3)
C2—C3—C4—C8178.3 (3)C12—C13—C14—C150.2 (5)
C3—C4—C5—C60.3 (5)C13—C14—C15—C16−1.3 (6)
C8—C4—C5—C6−179.5 (3)C14—C15—C16—N171.0 (6)
C4—C5—C6—C10.0 (4)C15—C16—N17—O18178.9 (3)
C4—C5—C6—C9−178.7 (3)C15—C16—N17—C120.5 (5)
C2—C1—C6—C50.9 (4)C13—C12—N17—O18179.9 (3)
C10—C1—C6—C5−177.1 (3)S11—C12—N17—O18−0.9 (4)
C2—C1—C6—C9179.5 (3)C13—C12—N17—C16−1.7 (5)
C10—C1—C6—C91.5 (4)S11—C12—N17—C16177.5 (3)
D—H···AD—HH···AD···AD—H···A
O1W—H1W···O180.842.052.875 (4)165.
O1W—H2W···O18i0.842.172.869 (4)141.
C16—H16···O1W0.952.583.226 (6)125
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1W—H1W⋯O180.842.052.875 (4)165
O1W—H2W⋯O18i0.842.172.869 (4)141
C16—H16⋯O1W0.952.583.226 (6)125

Symmetry code: (i) .

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