Literature DB >> 21201141

(2S)-Ethyl 2-[(S(s))-benzyl-sulfinyl-amino]-3,3-dimethylbutanoate.

Wei Zheng, Xun Sun, Jie Sun, Bang-Guo Wei.   

Abstract

The title compound, C(15)H(23)NO(3)S, is an unexpected 1,3-migration product in the addition of benzyl-zinc bromide to N-tert-butane-sulfinyl imino-acetate. In the crystal structure, mol-ecules are linked by N-H⋯O hydrogen bonds and weak C-H⋯O hydrogen bonds.

Entities:  

Year:  2008        PMID: 21201141      PMCID: PMC2959368          DOI: 10.1107/S1600536808028717

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see: Ellman et al. (2002 ▶); Lin et al. (2008 ▶); Daniel & Stockman (2006 ▶). For the synthesis of the titled compound, see: Sun et al. (2008 ▶).

Experimental

Crystal data

C15H23NO3S M = 297.40 Monoclinic, a = 11.166 (2) Å b = 7.1917 (14) Å c = 11.460 (2) Å β = 115.473 (3)° V = 830.8 (3) Å3 Z = 2 Mo Kα radiation μ = 0.20 mm−1 T = 293 (2) K 0.49 × 0.41 × 0.17 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.908, T max = 0.967 4782 measured reflections 3221 independent reflections 2661 reflections with I > 2σ(I) R int = 0.120

Refinement

R[F 2 > 2σ(F 2)] = 0.054 wR(F 2) = 0.134 S = 0.97 3221 reflections 189 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.43 e Å−3 Δρmin = −0.23 e Å−3 Absolute structure: Flack (1983 ▶), 1295 Friedel pairs Flack parameter: −0.09 (11) Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808028717/zl2133sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808028717/zl2133Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H23NO3SF(000) = 320
Mr = 297.40Dx = 1.189 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 1845 reflections
a = 11.166 (2) Åθ = 3.4–23.9°
b = 7.1917 (14) ŵ = 0.20 mm1
c = 11.460 (2) ÅT = 293 K
β = 115.473 (3)°Prismatic, colorless
V = 830.8 (3) Å30.49 × 0.41 × 0.17 mm
Z = 2
Bruker SMART APEX CCD area-detector diffractometer3221 independent reflections
Radiation source: fine-focus sealed tube2661 reflections with I > 2σ(I)
graphiteRint = 0.120
φ and ω scansθmax = 27.0°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Bruker, 2001)h = −11→14
Tmin = 0.908, Tmax = 0.967k = −8→9
4782 measured reflectionsl = −14→13
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.055H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.134w = 1/[σ2(Fo2) + (0.0662P)2] where P = (Fo2 + 2Fc2)/3
S = 0.97(Δ/σ)max = 0.001
3221 reflectionsΔρmax = 0.43 e Å3
189 parametersΔρmin = −0.23 e Å3
2 restraintsAbsolute structure: Flack (1983), 1295 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: −0.09 (11)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.04167 (7)0.26178 (12)0.67424 (6)0.0442 (2)
O10.3061 (3)0.0339 (4)0.5596 (3)0.0741 (8)
O20.4124 (3)0.2630 (5)0.6946 (2)0.0696 (7)
O30.0313 (3)0.3869 (4)0.5670 (2)0.0665 (7)
N10.1252 (2)0.0717 (4)0.6804 (2)0.0420 (6)
C10.2690 (3)0.0814 (4)0.7500 (3)0.0397 (6)
H10.29010.18730.80940.048*
C20.3305 (3)0.1206 (5)0.6568 (3)0.0501 (8)
C30.4801 (5)0.3093 (8)0.6131 (5)0.0923 (17)
H3A0.53480.20580.61080.111*
H3B0.41550.33530.52550.111*
C40.5613 (6)0.4705 (9)0.6677 (5)0.108 (2)
H4A0.50560.57750.65470.162*
H4B0.61890.49000.62630.162*
H4C0.61360.45160.75860.162*
C50.3281 (3)−0.0954 (5)0.8332 (3)0.0478 (7)
C60.4791 (4)−0.0865 (6)0.8887 (4)0.0681 (10)
H6A0.5167−0.19120.94450.102*
H6B0.50990.02640.93710.102*
H6C0.5057−0.08920.81940.102*
C70.2792 (4)−0.2720 (5)0.7539 (4)0.0649 (10)
H7A0.3185−0.37810.80760.097*
H7B0.3039−0.27020.68330.097*
H7C0.1844−0.27910.72060.097*
C80.2833 (4)−0.0948 (6)0.9414 (3)0.0653 (10)
H8A0.1882−0.09090.90480.098*
H8B0.31910.01240.99520.098*
H8C0.3145−0.20550.99240.098*
C9−0.1205 (3)0.1504 (5)0.6172 (3)0.0513 (8)
H9A−0.18800.24550.59750.062*
H9B−0.13840.08340.53800.062*
C10−0.1293 (3)0.0198 (5)0.7130 (3)0.0494 (8)
C11−0.1140 (4)−0.1679 (6)0.7036 (4)0.0664 (10)
H11−0.1014−0.21450.63400.080*
C12−0.1169 (5)−0.2890 (6)0.7960 (5)0.0895 (15)
H12−0.1062−0.41610.78850.107*
C13−0.1357 (5)−0.2210 (10)0.8991 (5)0.0940 (15)
H13−0.1374−0.30230.96150.113*
C14−0.1515 (5)−0.0390 (8)0.9098 (5)0.0903 (16)
H14−0.16510.00560.97940.108*
C15−0.1479 (4)0.0835 (6)0.8193 (4)0.0702 (11)
H15−0.15790.21010.82890.084*
H1A0.102 (3)0.001 (3)0.614 (2)0.049 (7)*
U11U22U33U12U13U23
S10.0470 (4)0.0432 (4)0.0420 (3)0.0052 (4)0.0189 (3)0.0057 (4)
O10.0850 (19)0.095 (2)0.0564 (14)−0.0256 (17)0.0441 (13)−0.0240 (15)
O20.0750 (16)0.0817 (16)0.0677 (13)−0.0294 (18)0.0455 (12)−0.0137 (18)
O30.0640 (16)0.0639 (16)0.0641 (15)0.0019 (13)0.0206 (12)0.0255 (13)
N10.0404 (14)0.0454 (15)0.0379 (12)−0.0008 (11)0.0146 (11)−0.0041 (11)
C10.0383 (15)0.0425 (17)0.0387 (14)−0.0046 (13)0.0168 (12)−0.0055 (13)
C20.0424 (17)0.060 (2)0.0489 (18)−0.0037 (16)0.0205 (14)−0.0013 (16)
C30.098 (4)0.119 (5)0.086 (3)−0.040 (3)0.065 (3)−0.019 (3)
C40.105 (4)0.132 (5)0.112 (4)−0.035 (4)0.070 (3)0.001 (3)
C50.0499 (18)0.0452 (17)0.0415 (16)0.0018 (15)0.0132 (13)−0.0001 (14)
C60.048 (2)0.073 (2)0.064 (2)0.0088 (19)0.0065 (17)0.002 (2)
C70.067 (2)0.048 (3)0.067 (2)0.0015 (18)0.0159 (17)−0.0079 (17)
C80.080 (3)0.067 (2)0.0490 (19)0.004 (2)0.0276 (18)0.0121 (18)
C90.0421 (17)0.065 (2)0.0451 (16)0.0087 (16)0.0174 (14)0.0066 (15)
C100.0369 (17)0.059 (2)0.0522 (18)−0.0030 (14)0.0190 (14)0.0005 (15)
C110.062 (2)0.070 (3)0.064 (2)−0.0145 (19)0.0243 (18)−0.0035 (18)
C120.092 (4)0.058 (3)0.113 (4)−0.018 (2)0.038 (3)0.011 (2)
C130.086 (3)0.108 (4)0.094 (3)−0.021 (4)0.044 (2)0.033 (4)
C140.095 (4)0.121 (5)0.077 (3)−0.006 (3)0.057 (3)0.012 (3)
C150.074 (3)0.075 (3)0.074 (2)−0.001 (2)0.043 (2)−0.002 (2)
S1—O31.487 (2)C6—H6C0.9600
S1—N11.639 (3)C7—H7A0.9600
S1—C91.824 (4)C7—H7B0.9600
O1—C21.201 (4)C7—H7C0.9600
O2—C21.316 (4)C8—H8A0.9600
O2—C31.471 (4)C8—H8B0.9600
N1—C11.455 (4)C8—H8C0.9600
N1—H1A0.859 (17)C9—C101.480 (5)
C1—C21.523 (4)C9—H9A0.9700
C1—C51.555 (4)C9—H9B0.9700
C1—H10.9800C10—C111.371 (5)
C3—C41.439 (7)C10—C151.398 (5)
C3—H3A0.9700C11—C121.382 (6)
C3—H3B0.9700C11—H110.9300
C4—H4A0.9600C12—C131.375 (7)
C4—H4B0.9600C12—H120.9300
C4—H4C0.9600C13—C141.334 (8)
C5—C71.520 (5)C13—H130.9300
C5—C81.524 (5)C14—C151.374 (6)
C5—C61.526 (5)C14—H140.9300
C6—H6A0.9600C15—H150.9300
C6—H6B0.9600
O3—S1—N1112.37 (15)H6A—C6—H6C109.5
O3—S1—C9104.90 (15)H6B—C6—H6C109.5
N1—S1—C996.19 (15)C5—C7—H7A109.5
C2—O2—C3116.2 (3)C5—C7—H7B109.5
C1—N1—S1117.2 (2)H7A—C7—H7B109.5
C1—N1—H1A111.1 (19)C5—C7—H7C109.5
S1—N1—H1A120.2 (19)H7A—C7—H7C109.5
N1—C1—C2110.4 (2)H7B—C7—H7C109.5
N1—C1—C5111.9 (2)C5—C8—H8A109.5
C2—C1—C5112.4 (3)C5—C8—H8B109.5
N1—C1—H1107.3H8A—C8—H8B109.5
C2—C1—H1107.3C5—C8—H8C109.5
C5—C1—H1107.3H8A—C8—H8C109.5
O1—C2—O2123.9 (3)H8B—C8—H8C109.5
O1—C2—C1124.3 (3)C10—C9—S1112.7 (2)
O2—C2—C1111.8 (3)C10—C9—H9A109.1
C4—C3—O2107.8 (4)S1—C9—H9A109.1
C4—C3—H3A110.1C10—C9—H9B109.1
O2—C3—H3A110.1S1—C9—H9B109.1
C4—C3—H3B110.1H9A—C9—H9B107.8
O2—C3—H3B110.1C11—C10—C15117.5 (4)
H3A—C3—H3B108.5C11—C10—C9121.1 (3)
C3—C4—H4A109.5C15—C10—C9121.4 (3)
C3—C4—H4B109.5C10—C11—C12121.0 (4)
H4A—C4—H4B109.5C10—C11—H11119.5
C3—C4—H4C109.5C12—C11—H11119.5
H4A—C4—H4C109.5C13—C12—C11119.8 (4)
H4B—C4—H4C109.5C13—C12—H12120.1
C7—C5—C8109.2 (3)C11—C12—H12120.1
C7—C5—C6109.4 (3)C14—C13—C12120.2 (4)
C8—C5—C6110.6 (3)C14—C13—H13119.9
C7—C5—C1111.6 (2)C12—C13—H13119.9
C8—C5—C1107.2 (3)C13—C14—C15120.8 (5)
C6—C5—C1108.8 (3)C13—C14—H14119.6
C5—C6—H6A109.5C15—C14—H14119.6
C5—C6—H6B109.5C14—C15—C10120.8 (4)
H6A—C6—H6B109.5C14—C15—H15119.6
C5—C6—H6C109.5C10—C15—H15119.6
O3—S1—N1—C184.8 (2)N1—C1—C5—C6172.6 (3)
C9—S1—N1—C1−166.3 (2)C2—C1—C5—C647.8 (3)
S1—N1—C1—C2−95.2 (3)O3—S1—C9—C10−179.6 (3)
S1—N1—C1—C5138.8 (2)N1—S1—C9—C1065.2 (3)
C3—O2—C2—O1−2.6 (6)S1—C9—C10—C11−99.0 (4)
C3—O2—C2—C1178.3 (4)S1—C9—C10—C1578.2 (4)
N1—C1—C2—O1−51.2 (4)C15—C10—C11—C120.1 (6)
C5—C1—C2—O174.6 (4)C9—C10—C11—C12177.4 (4)
N1—C1—C2—O2128.0 (3)C10—C11—C12—C130.1 (7)
C5—C1—C2—O2−106.3 (3)C11—C12—C13—C140.2 (8)
C2—O2—C3—C4178.3 (4)C12—C13—C14—C15−0.7 (9)
N1—C1—C5—C751.8 (3)C13—C14—C15—C100.9 (7)
C2—C1—C5—C7−73.1 (4)C11—C10—C15—C14−0.5 (6)
N1—C1—C5—C8−67.8 (3)C9—C10—C15—C14−177.8 (4)
C2—C1—C5—C8167.4 (3)
D—H···AD—HH···AD···AD—H···A
C7—H7B···O10.962.613.234 (5)123.
C9—H9B···O3i0.972.483.296 (5)142.
N1—H1A···O3i0.86 (2)2.13 (2)2.932 (3)156 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C7—H7B⋯O10.962.613.234 (5)123
C9—H9B⋯O3i0.972.483.296 (5)142
N1—H1A⋯O3i0.859 (17)2.13 (2)2.932 (3)156 (3)

Symmetry code: (i) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  N-tert-butanesulfinyl imines: versatile intermediates for the asymmetric synthesis of amines.

Authors:  Jonathan A Ellman; Timothy D Owens; Tony P Tang
Journal:  Acc Chem Res       Date:  2002-11       Impact factor: 22.384

3.  An advance on exploring N-tert-butanesulfinyl imines in asymmetric synthesis of chiral amines.

Authors:  Guo-Qiang Lin; Ming-Hua Xu; Yu-Wu Zhong; Xing-Wen Sun
Journal:  Acc Chem Res       Date:  2008-06-06       Impact factor: 22.384

  3 in total

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