| Literature DB >> 21201093 |
Shu-Ye Wang1, Xue-Ming Song, Li-Xiang Duan.
Abstract
In the title compound, C(9)H(11)N(3)O, the crystal structure is stabilized by a bifurcated inter-molecular N-H⋯(N,O) hydrogen bond and a C-H⋯O inter-action, leading to chains of mol-ecules.Entities:
Year: 2008 PMID: 21201093 PMCID: PMC2959451 DOI: 10.1107/S1600536808027955
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C9H11N3O | |
| Orthorhombic, | Mo |
| Hall symbol: -P 2ab 2ac | Cell parameters from 1634 reflections |
| θ = 2.0–25.1° | |
| µ = 0.09 mm−1 | |
| Block, yellow | |
| 0.43 × 0.28 × 0.22 mm |
| Bruker APEXII CCD diffractometer | 1634 independent reflections |
| Radiation source: fine-focus sealed tube | 986 reflections with |
| graphite | |
| φ and ω scans | θmax = 25.1°, θmin = 2.0° |
| Absorption correction: multi-scan (SADABS; Bruker, 2001) | |
| 9110 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: difmap (N-H) and geom (C-H) | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 1634 reflections | (Δ/σ)max < 0.001 |
| 125 parameters | Δρmax = 0.18 e Å−3 |
| 1 restraint | Δρmin = −0.14 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 0.5785 (2) | 0.3888 (2) | 0.6946 (4) | 0.0774 (9) | |
| H1 | 0.5509 | 0.4037 | 0.7967 | 0.093* | |
| C2 | 0.6065 (2) | 0.44485 (16) | 0.5836 (3) | 0.0615 (7) | |
| H2 | 0.5975 | 0.4959 | 0.6102 | 0.074* | |
| C3 | 0.64780 (16) | 0.42398 (14) | 0.4339 (3) | 0.0475 (6) | |
| C4 | 0.65648 (19) | 0.34815 (15) | 0.4012 (3) | 0.0599 (7) | |
| H4 | 0.6825 | 0.3317 | 0.2992 | 0.072* | |
| C5 | 0.6266 (2) | 0.29651 (16) | 0.5193 (4) | 0.0699 (8) | |
| H5 | 0.6338 | 0.2451 | 0.4945 | 0.084* | |
| C6 | 0.67852 (18) | 0.48038 (13) | 0.3061 (3) | 0.0493 (6) | |
| C7 | 0.84373 (18) | 0.63336 (14) | 0.2827 (3) | 0.0494 (6) | |
| C8 | 0.8682 (2) | 0.69467 (16) | 0.1616 (4) | 0.0771 (9) | |
| H8A | 0.8188 | 0.6941 | 0.0725 | 0.116* | |
| H8B | 0.9358 | 0.6866 | 0.1168 | 0.116* | |
| H8C | 0.8659 | 0.7430 | 0.2174 | 0.116* | |
| C9 | 0.91433 (19) | 0.62320 (16) | 0.4257 (3) | 0.0620 (8) | |
| H9A | 0.8751 | 0.6165 | 0.5263 | 0.093* | |
| H9B | 0.9573 | 0.6673 | 0.4365 | 0.093* | |
| H9C | 0.9565 | 0.5792 | 0.4073 | 0.093* | |
| N1 | 0.58839 (18) | 0.31505 (15) | 0.6654 (3) | 0.0767 (8) | |
| N2 | 0.73950 (15) | 0.53574 (12) | 0.3610 (2) | 0.0517 (6) | |
| N3 | 0.76506 (16) | 0.59328 (11) | 0.2493 (2) | 0.0544 (6) | |
| O1 | 0.64977 (13) | 0.47481 (10) | 0.1615 (2) | 0.0676 (6) | |
| H2A | 0.7650 (17) | 0.5349 (14) | 0.4690 (16) | 0.072 (8)* |
| C1 | 0.092 (2) | 0.087 (2) | 0.0534 (18) | −0.0139 (18) | 0.0222 (15) | 0.0038 (16) |
| C2 | 0.0764 (18) | 0.0595 (17) | 0.0486 (16) | −0.0105 (14) | 0.0130 (13) | 0.0062 (13) |
| C3 | 0.0441 (14) | 0.0593 (17) | 0.0391 (13) | −0.0091 (11) | −0.0025 (11) | 0.0023 (11) |
| C4 | 0.0596 (17) | 0.0651 (19) | 0.0552 (17) | −0.0069 (14) | 0.0043 (12) | −0.0020 (14) |
| C5 | 0.0658 (18) | 0.0616 (18) | 0.082 (2) | −0.0076 (14) | −0.0046 (16) | 0.0095 (16) |
| C6 | 0.0495 (14) | 0.0609 (16) | 0.0375 (14) | −0.0071 (12) | −0.0004 (11) | 0.0039 (12) |
| C7 | 0.0465 (14) | 0.0565 (16) | 0.0453 (14) | −0.0012 (12) | 0.0043 (11) | 0.0032 (11) |
| C8 | 0.0697 (18) | 0.078 (2) | 0.084 (2) | −0.0169 (16) | 0.0030 (16) | 0.0294 (16) |
| C9 | 0.0562 (15) | 0.0726 (18) | 0.0574 (17) | −0.0112 (13) | −0.0062 (13) | 0.0025 (13) |
| N1 | 0.0825 (17) | 0.078 (2) | 0.0697 (18) | −0.0147 (14) | 0.0044 (13) | 0.0211 (14) |
| N2 | 0.0602 (13) | 0.0628 (14) | 0.0321 (11) | −0.0156 (11) | −0.0034 (9) | 0.0091 (10) |
| N3 | 0.0579 (13) | 0.0647 (14) | 0.0406 (12) | −0.0108 (11) | −0.0030 (9) | 0.0147 (10) |
| O1 | 0.0759 (13) | 0.0883 (14) | 0.0387 (10) | −0.0241 (10) | −0.0097 (8) | 0.0064 (9) |
| C1—N1 | 1.324 (4) | C6—N2 | 1.331 (3) |
| C1—C2 | 1.376 (4) | C7—N3 | 1.271 (3) |
| C1—H1 | 0.9300 | C7—C8 | 1.484 (3) |
| C2—C3 | 1.363 (3) | C7—C9 | 1.478 (3) |
| C2—H2 | 0.9300 | C8—H8A | 0.9600 |
| C3—C4 | 1.364 (3) | C8—H8B | 0.9600 |
| C3—C6 | 1.480 (3) | C8—H8C | 0.9600 |
| C4—C5 | 1.367 (4) | C9—H9A | 0.9600 |
| C4—H4 | 0.9300 | C9—H9B | 0.9600 |
| C5—N1 | 1.312 (4) | C9—H9C | 0.9600 |
| C5—H5 | 0.9300 | N2—N3 | 1.391 (2) |
| C6—O1 | 1.220 (3) | N2—H2A | 0.926 (10) |
| N1—C1—C2 | 124.2 (3) | N3—C7—C9 | 126.6 (2) |
| N1—C1—H1 | 117.9 | C8—C7—C9 | 117.4 (2) |
| C2—C1—H1 | 117.9 | C7—C8—H8A | 109.5 |
| C3—C2—C1 | 118.6 (3) | C7—C8—H8B | 109.5 |
| C3—C2—H2 | 120.7 | H8A—C8—H8B | 109.5 |
| C1—C2—H2 | 120.7 | C7—C8—H8C | 109.5 |
| C4—C3—C2 | 117.7 (2) | H8A—C8—H8C | 109.5 |
| C4—C3—C6 | 120.0 (2) | H8B—C8—H8C | 109.5 |
| C2—C3—C6 | 122.2 (2) | C7—C9—H9A | 109.5 |
| C5—C4—C3 | 119.6 (3) | C7—C9—H9B | 109.5 |
| C5—C4—H4 | 120.2 | H9A—C9—H9B | 109.5 |
| C3—C4—H4 | 120.2 | C7—C9—H9C | 109.5 |
| N1—C5—C4 | 124.0 (3) | H9A—C9—H9C | 109.5 |
| N1—C5—H5 | 118.0 | H9B—C9—H9C | 109.5 |
| C4—C5—H5 | 118.0 | C5—N1—C1 | 116.0 (2) |
| O1—C6—N2 | 123.7 (2) | C6—N2—N3 | 117.57 (19) |
| O1—C6—C3 | 121.2 (2) | C6—N2—H2A | 120.6 (15) |
| N2—C6—C3 | 115.1 (2) | N3—N2—H2A | 121.8 (15) |
| N3—C7—C8 | 116.0 (2) | C7—N3—N2 | 117.42 (19) |
| H··· | ||||
| N2—H2A···O1i | 0.93 (2) | 2.17 (2) | 3.001 (3) | 149 (2) |
| N2—H2A···N3i | 0.93 (2) | 2.50 (2) | 3.268 (2) | 141.(2) |
| C9—H9A···N3i | 0.96 | 2.58 | 3.525 (3) | 167 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N2—H2 | 0.926 (15) | 2.172 (19) | 3.001 (3) | 149 (2) |
| N2—H2 | 0.926 (15) | 2.497 (16) | 3.268 (2) | 140.9 (19) |
| C9—H9 | 0.96 | 2.58 | 3.525 (3) | 167 |
Symmetry code: (i) .