Literature DB >> 21201063

cis-Dichloridobis(1,10-phenanthroline)cobalt(II) dimethyl-formamide solvate.

Shuang-Lian Cai, Shao-Ming Ying, Hui Li, Yun Chen.   

Abstract

In the title complex, [CoCl(2)(C(12)H(8)N(2))(2)]·C(3)H(7)NO, which has twofold rotation symmetry, the Co(II) cation is coordinated by two 1,10-phenanthroline (phen) mol-ecules and two chloride ligands in a distorted octa-hedral geometry. In the crystal structure, a cavity is created by six complex mol-ecules connected by C-H⋯π inter-actions and non-classical C-H⋯Cl hydrogen bonds. The cavities are occupied by the disordered dimethyl-formamide solvent mol-ecule. The C and N atoms of the C-N bond in the solvent mol-ecule also lie on a crystallographic twofold rotation axis; the remaining atoms of the solvent are statistically disordered (ratio 0.5:0.5) about this axis.

Entities:  

Year:  2008        PMID: 21201063      PMCID: PMC2959430          DOI: 10.1107/S1600536808030341

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see: Forster et al. (2000 ▶); Holder et al. (2007 ▶); Ma et al. (2002 ▶). Matsumoto et al. (2002 ▶); Xie et al. (2006 ▶). For a related structure, see: Hazell et al. (1997 ▶).

Experimental

Crystal data

[CoCl2(C12H8N2)2]·C3H7NO M = 563.33 Orthorhombic, a = 16.345 (3) Å b = 12.342 (2) Å c = 12.342 (2) Å V = 2489.8 (8) Å3 Z = 4 Mo Kα radiation μ = 0.94 mm−1 T = 293 (2) K 0.20 × 0.20 × 0.20 mm

Data collection

Rigaku Mercury70 CCD diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku & Mol­ecular Structure Corporation, 2000 ▶) T min = 0.829, T max = 0.829 14711 measured reflections 2204 independent reflections 2168 reflections with I > 2σ(I) R int = 0.017

Refinement

R[F 2 > 2σ(F 2)] = 0.026 wR(F 2) = 0.063 S = 1.09 2204 reflections 180 parameters 2 restraints H-atom parameters constrained Δρmax = 0.34 e Å−3 Δρmin = −0.21 e Å−3 Data collection: CrystalClear (Rigaku & Molecular Structure Corporation, 2000 ▶); cell refinement: CrystalClear; data reduction: CrystalClear program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 2005 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶) and PLATON (Spek; 2003 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808030341/sj2538sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808030341/sj2538Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[CoCl2(C12H8N2)2]·C3H7NOF(000) = 1156
Mr = 563.33Dx = 1.503 Mg m3
Orthorhombic, PbcnMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2n 2abCell parameters from 6370 reflections
a = 16.345 (3) Åθ = 2.1–25.0°
b = 12.342 (2) ŵ = 0.94 mm1
c = 12.342 (2) ÅT = 293 K
V = 2489.8 (8) Å3Block, colorless
Z = 40.20 × 0.20 × 0.20 mm
Rigaku Mercury70 CCD diffractometer2204 independent reflections
Radiation source: fine-focus sealed tube2168 reflections with I > 2σ(I)
graphiteRint = 0.017
ω scansθmax = 25.0°, θmin = 2.1°
Absorption correction: multi-scan (CrystalClear; Rigaku & Molecular Structure Corporation, 2000)h = −17→19
Tmin = 0.829, Tmax = 0.829k = −14→14
14711 measured reflectionsl = −13→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.026Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.063H-atom parameters constrained
S = 1.09w = 1/[σ2(Fo2) + (0.0288P)2 + 1.9948P] where P = (Fo2 + 2Fc2)/3
2204 reflections(Δ/σ)max < 0.001
180 parametersΔρmax = 0.34 e Å3
2 restraintsΔρmin = −0.21 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Co10.50000.71666 (2)0.25000.01272 (10)
Cl10.41390 (2)0.59903 (3)0.14376 (3)0.01956 (11)
N20.59089 (8)0.72168 (10)0.12398 (11)0.0151 (3)
C110.65206 (9)0.79462 (12)0.14122 (12)0.0141 (3)
N10.57879 (8)0.84851 (11)0.29957 (11)0.0162 (3)
C70.72069 (9)0.80426 (13)0.07300 (13)0.0171 (3)
C120.64445 (9)0.86417 (12)0.23421 (13)0.0148 (3)
C30.69394 (10)1.00860 (14)0.34665 (14)0.0228 (4)
H3A0.73171.06260.36280.027*
C100.59726 (10)0.65659 (13)0.03895 (13)0.0187 (3)
H10A0.55580.60650.02640.022*
C10.57135 (10)0.91093 (14)0.38597 (14)0.0215 (4)
H1A0.52640.90070.43110.026*
C60.78081 (10)0.88565 (14)0.09568 (14)0.0209 (4)
H6A0.82610.89240.05070.025*
C50.77263 (10)0.95285 (14)0.18162 (14)0.0218 (4)
H5A0.81201.00590.19400.026*
C20.62797 (10)0.99184 (15)0.41280 (15)0.0253 (4)
H2A0.62081.03360.47480.030*
C80.72538 (11)0.73320 (13)−0.01602 (14)0.0210 (4)
H8A0.76990.7360−0.06290.025*
C90.66376 (10)0.65987 (14)−0.03293 (14)0.0222 (4)
H9A0.66600.6126−0.09160.027*
C40.70425 (10)0.94361 (13)0.25393 (13)0.0176 (3)
O10.5517 (2)0.0842 (2)0.1510 (3)0.0433 (7)0.50
N30.50000.2344 (2)0.25000.0453 (7)
C130.5478 (6)0.1828 (7)0.1772 (8)0.048 (3)0.50
H13A0.58400.22760.14000.057*0.50
C140.50000.3523 (3)0.25000.0553 (10)
H14A0.55510.37830.24270.083*0.50
H14B0.47720.37830.31680.083*0.50
H14C0.46770.37830.19040.083*0.50
C150.5421 (7)0.1760 (10)0.1657 (9)0.067 (4)0.50
H15A0.53750.21510.09870.100*0.50
H15B0.51800.10550.15750.100*0.50
H15C0.59880.16850.18460.100*0.50
U11U22U33U12U13U23
Co10.01000 (16)0.01385 (16)0.01430 (17)0.000−0.00028 (11)0.000
Cl10.0170 (2)0.0213 (2)0.0203 (2)−0.00516 (15)−0.00274 (15)−0.00162 (16)
N20.0134 (6)0.0161 (6)0.0159 (7)−0.0002 (5)−0.0015 (5)0.0012 (5)
C110.0124 (7)0.0146 (7)0.0152 (8)0.0011 (6)−0.0018 (6)0.0033 (6)
N10.0131 (6)0.0174 (7)0.0181 (7)0.0004 (5)−0.0004 (5)−0.0016 (6)
C70.0148 (8)0.0187 (8)0.0177 (8)0.0012 (6)0.0003 (6)0.0036 (6)
C120.0130 (7)0.0147 (7)0.0168 (8)0.0012 (6)−0.0027 (6)0.0023 (6)
C30.0203 (8)0.0208 (8)0.0272 (9)−0.0047 (7)−0.0045 (7)−0.0045 (7)
C100.0185 (8)0.0180 (8)0.0195 (8)−0.0006 (6)−0.0012 (7)−0.0031 (7)
C10.0176 (8)0.0252 (9)0.0218 (9)0.0001 (7)0.0035 (7)−0.0054 (7)
C60.0156 (8)0.0263 (8)0.0208 (8)−0.0033 (7)0.0022 (7)0.0047 (7)
C50.0181 (8)0.0236 (8)0.0238 (9)−0.0078 (7)−0.0018 (7)0.0036 (7)
C20.0227 (9)0.0270 (9)0.0262 (9)−0.0020 (7)0.0003 (7)−0.0109 (8)
C80.0185 (8)0.0249 (8)0.0197 (8)0.0025 (7)0.0055 (7)0.0018 (7)
C90.0240 (9)0.0224 (8)0.0203 (8)0.0012 (7)0.0022 (7)−0.0048 (7)
C40.0155 (8)0.0179 (8)0.0194 (8)−0.0003 (7)−0.0034 (6)0.0015 (6)
O10.0492 (19)0.0294 (16)0.0512 (19)0.0003 (14)−0.0046 (15)−0.0048 (14)
N30.0390 (15)0.0223 (12)0.075 (2)0.000−0.0214 (14)0.000
C130.065 (7)0.018 (4)0.060 (5)−0.007 (4)0.030 (5)0.001 (3)
C140.049 (2)0.0259 (16)0.090 (3)0.000−0.0091 (19)0.000
C150.047 (5)0.057 (7)0.095 (7)0.001 (5)−0.041 (5)−0.028 (5)
Co1—N22.1517 (13)C6—C51.353 (2)
Co1—N2i2.1517 (13)C6—H6A0.9300
Co1—N12.1636 (13)C5—C41.435 (2)
Co1—N1i2.1636 (13)C5—H5A0.9300
Co1—Cl12.4099 (5)C2—H2A0.9300
Co1—Cl1i2.4099 (5)C8—C91.370 (2)
N2—C101.326 (2)C8—H8A0.9300
N2—C111.362 (2)C9—H9A0.9300
C11—C71.408 (2)O1—C131.260 (9)
C11—C121.439 (2)N3—C131.351 (7)
N1—C11.321 (2)N3—C151.441 (8)
N1—C121.356 (2)N3—C141.456 (4)
C7—C81.408 (2)N3—C13i1.351 (7)
C7—C61.433 (2)N3—C15i1.441 (8)
C12—C41.406 (2)C13—H13A0.9300
C3—C21.368 (2)C14—H14A0.9600
C3—C41.408 (2)C14—H14B0.9600
C3—H3A0.9300C14—H14C0.9600
C10—C91.404 (2)C15—H15A0.9600
C10—H10A0.9300C15—H15B0.9600
C1—C21.401 (2)C15—H15C0.9600
C1—H1A0.9300
N2—Co1—N2i176.70 (7)C5—C6—C7121.01 (15)
N2—Co1—N176.81 (5)C5—C6—H6A119.5
N2i—Co1—N1100.65 (5)C7—C6—H6A119.5
N2—Co1—N1i100.65 (5)C6—C5—C4121.05 (15)
N2i—Co1—N1i76.81 (5)C6—C5—H5A119.5
N1—Co1—N1i82.44 (7)C4—C5—H5A119.5
N2—Co1—Cl191.56 (4)C3—C2—C1119.15 (16)
N2i—Co1—Cl190.43 (4)C3—C2—H2A120.4
N1—Co1—Cl1162.67 (4)C1—C2—H2A120.4
N1i—Co1—Cl187.23 (4)C9—C8—C7119.36 (15)
N2—Co1—Cl1i90.43 (4)C9—C8—H8A120.3
N2i—Co1—Cl1i91.56 (4)C7—C8—H8A120.3
N1—Co1—Cl1i87.23 (4)C8—C9—C10119.48 (15)
N1i—Co1—Cl1i162.67 (4)C8—C9—H9A120.3
Cl1—Co1—Cl1i105.91 (2)C10—C9—H9A120.3
C10—N2—C11117.80 (14)C12—C4—C3117.06 (15)
C10—N2—Co1127.52 (11)C12—C4—C5119.30 (15)
C11—N2—Co1114.39 (10)C3—C4—C5123.62 (15)
N2—C11—C7123.19 (14)C13i—N3—C13123.8 (8)
N2—C11—C12117.10 (14)C13—N3—C15i121.4 (4)
C7—C11—C12119.71 (14)C13i—N3—C15121.4 (4)
C1—N1—C12118.02 (14)C15i—N3—C15120.0 (11)
C1—N1—Co1127.74 (11)C13—N3—C14118.1 (4)
C12—N1—Co1114.20 (10)C15—N3—C14120.0 (6)
C11—C7—C8117.23 (15)O1—C13—N3130.9 (6)
C11—C7—C6119.27 (15)O1—C13—H13A114.6
C8—C7—C6123.49 (15)N3—C13—H13A114.6
N1—C12—C4123.13 (14)N3—C14—H14A109.5
N1—C12—C11117.25 (14)N3—C14—H14B109.5
C4—C12—C11119.62 (14)H14A—C14—H14B109.5
C2—C3—C4119.56 (16)N3—C14—H14C109.5
C2—C3—H3A120.2H14A—C14—H14C109.5
C4—C3—H3A120.2H14B—C14—H14C109.5
N2—C10—C9122.94 (15)N3—C15—H15A109.5
N2—C10—H10A118.5N3—C15—H15B109.5
C9—C10—H10A118.5H15A—C15—H15B109.5
N1—C1—C2123.06 (16)N3—C15—H15C109.5
N1—C1—H1A118.5H15A—C15—H15C109.5
C2—C1—H1A118.5H15B—C15—H15C109.5
N1—Co1—N2—C10178.15 (14)N2—C11—C12—N12.6 (2)
N1i—Co1—N2—C10−102.31 (13)C7—C11—C12—N1−177.44 (14)
Cl1—Co1—N2—C10−14.83 (13)N2—C11—C12—C4−177.75 (14)
Cl1i—Co1—N2—C1091.10 (13)C7—C11—C12—C42.2 (2)
N1—Co1—N2—C114.54 (10)C11—N2—C10—C90.1 (2)
N1i—Co1—N2—C1184.08 (11)Co1—N2—C10—C9−173.37 (12)
Cl1—Co1—N2—C11171.56 (10)C12—N1—C1—C2−0.1 (2)
Cl1i—Co1—N2—C11−82.51 (10)Co1—N1—C1—C2177.45 (13)
C10—N2—C11—C70.5 (2)C11—C7—C6—C50.2 (2)
Co1—N2—C11—C7174.73 (12)C8—C7—C6—C5179.06 (16)
C10—N2—C11—C12−179.63 (14)C7—C6—C5—C41.1 (3)
Co1—N2—C11—C12−5.35 (17)C4—C3—C2—C1−0.8 (3)
N2—Co1—N1—C1179.24 (15)N1—C1—C2—C30.6 (3)
N2i—Co1—N1—C11.40 (15)C11—C7—C8—C90.7 (2)
N1i—Co1—N1—C176.37 (14)C6—C7—C8—C9−178.19 (16)
Cl1—Co1—N1—C1130.31 (14)C7—C8—C9—C10−0.2 (2)
Cl1i—Co1—N1—C1−89.67 (14)N2—C10—C9—C8−0.2 (3)
N2—Co1—N1—C12−3.15 (10)N1—C12—C4—C30.1 (2)
N2i—Co1—N1—C12179.00 (10)C11—C12—C4—C3−179.44 (14)
N1i—Co1—N1—C12−106.02 (12)N1—C12—C4—C5178.67 (15)
Cl1—Co1—N1—C12−52.08 (19)C11—C12—C4—C5−0.9 (2)
Cl1i—Co1—N1—C1287.94 (10)C2—C3—C4—C120.4 (2)
N2—C11—C7—C8−0.8 (2)C2—C3—C4—C5−178.04 (17)
C12—C11—C7—C8179.25 (14)C6—C5—C4—C12−0.7 (2)
N2—C11—C7—C6178.10 (14)C6—C5—C4—C3177.71 (16)
C12—C11—C7—C6−1.8 (2)C13i—N3—C13—O19.9 (10)
C1—N1—C12—C4−0.3 (2)C15i—N3—C13—O118 (2)
Co1—N1—C12—C4−178.17 (12)C15—N3—C13—O1−62 (7)
C1—N1—C12—C11179.28 (14)C14—N3—C13—O1−170.1 (10)
Co1—N1—C12—C111.42 (17)
D—H···AD—HH···AD···AD—H···A
C10—H10A···Cl10.932.743.3408 (17)124.
C6—H6A···Cl1ii0.932.803.6743 (18)158.
C5—H5A···Cl1iii0.932.853.6375 (17)144.
C2—H2A···Cg1iv0.932.993.768 (2)142
C8—H8A···Cg2v0.932.903.608 (2)134
Co1—N22.1517 (13)
Co1—N12.1636 (13)
Co1—Cl12.4099 (5)
N2—Co1—N2i176.70 (7)
N2—Co1—N176.81 (5)
N2—Co1—N1i100.65 (5)
N1—Co1—N1i82.44 (7)
N2—Co1—Cl191.56 (4)
N2i—Co1—Cl190.43 (4)
N1—Co1—Cl1162.67 (4)
N1i—Co1—Cl187.23 (4)
Cl1—Co1—Cl1i105.91 (2)

Symmetry code: (i) .

Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C10—H10A⋯Cl10.932.743.3408 (17)124
C6—H6A⋯Cl1ii0.932.803.6743 (18)158
C5—H5A⋯Cl1iii0.932.853.6375 (17)144
C2—H2ACg1iv0.932.993.768 (2)142
C8—H8ACg2v0.932.903.608 (2)134

Symmetry codes: (ii) ; (iii) ; (iv) ; (v) .

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