Literature DB >> 21201060

Chlorido(dimethyl sulfoxide-κS)[2-(2-pyrid-yl)phenyl-κN,C]platinum(II).

Masayuki Kobayashi1, Shigeyuki Masaoka, Ken Sakai.   

Abstract

In the title compound, [Pt(C(11)H(8)N)Cl(C(2)H(6)OS)], the S atom of dimethyl sulfoxide is trans to the pyridyl N atom [Pt-S = 2.2181 (11) Å] and the chlorido ligand is trans to the carbon donor of 2-(2-pyrid-yl)phenyl [Pt-Cl = 2.4202 (10) Å]. The [2-(2-pyrid-yl)phen-yl]platinum(II) unit forms a one-dimensional stack along the c axis with two independent inter-planar separations of 3.44 (9) and 3.50 (2) Å.

Entities:  

Year:  2008        PMID: 21201060      PMCID: PMC2959355          DOI: 10.1107/S1600536808030109

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background information, see: Herber et al. (1994 ▶); Mdleleni et al. (1995 ▶); Newman et al. (2007 ▶); Ozawa et al. (2006 ▶, 2007 ▶); Sakai & Ozawa (2007 ▶); Sakai et al. (1993 ▶); Ozawa & Sakai (2007 ▶); Kobayashi et al. (2008 ▶).

Experimental

Crystal data

[Pt(C11H8N)Cl(C2H6OS)] M = 462.85 Monoclinic, a = 22.414 (3) Å b = 10.0205 (16) Å c = 14.057 (2) Å β = 124.512 (2)° V = 2601.6 (7) Å3 Z = 8 Mo Kα radiation μ = 11.14 mm−1 T = 100 (2) K 0.09 × 0.08 × 0.04 mm

Data collection

Bruker SMART APEXII CCD-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.486, T max = 0.640 7004 measured reflections 2850 independent reflections 2448 reflections with I > 2σ(I) R int = 0.018

Refinement

R[F 2 > 2σ(F 2)] = 0.023 wR(F 2) = 0.064 S = 1.11 2850 reflections 165 parameters H-atom parameters constrained Δρmax = 2.05 e Å−3 Δρmin = −1.43 e Å−3 Data collection: APEX2 (Bruker, 2006 ▶); cell refinement: APEX2; data reduction: SAINT (Bruker, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: KENX (Sakai, 2004 ▶); software used to prepare material for publication: SHELXL97, TEXSAN (Molecular Structure Corporation, 2001 ▶), KENX and ORTEPII (Johnson, 1976 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808030109/at2633sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808030109/at2633Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Pt(C11H8N)Cl(C2H6OS)]F(000) = 1744
Mr = 462.85Dx = 2.363 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 3936 reflections
a = 22.414 (3) Åθ = 2.5–27.9°
b = 10.0205 (16) ŵ = 11.14 mm1
c = 14.057 (2) ÅT = 100 K
β = 124.512 (2)°Prisms, yellow
V = 2601.6 (7) Å30.09 × 0.08 × 0.04 mm
Z = 8
Bruker SMART APEX CCD-detector diffractometer2850 independent reflections
Radiation source: rotating anode with a mirror focusing unit2448 reflections with I > 2σ(I)
graphiteRint = 0.018
φ and ω scansθmax = 27.1°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −28→28
Tmin = 0.486, Tmax = 0.640k = −12→9
7004 measured reflectionsl = −18→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.023Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.064H-atom parameters constrained
S = 1.11w = 1/[σ2(Fo2) + (0.0295P)2 + 15.2156P] where P = (Fo2 + 2Fc2)/3
2850 reflections(Δ/σ)max = 0.002
165 parametersΔρmax = 2.05 e Å3
0 restraintsΔρmin = −1.43 e Å3
Experimental. The first 50 frames were rescanned at the end of data collection to evaluate any possible decay phenomenon. Since it was judged to be negligible, no decay correction was applied to the data.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.Least-squares planes (x,y,z in crystal coordinates) and deviations from them (* indicates atom used to define plane)-14.3368 (0.0269) x - 0.3580 (0.0127) y + 13.9887 (0.0034) z = 5.0906 (0.0091)* 0.0000 (0.0001) N1 * -0.0003 (0.0009) C11 * -0.0002 (0.0007) Cl1 * 0.0004 (0.0015) Pt1 - 0.0669 (0.0049) S1 - 0.0453 (0.0077) O1Rms deviation of fitted atoms = 0.0003-15.0609 (0.0266) x - 0.5670 (0.0181) y + 13.9054 (0.0039) z = 4.9585 (0.0082)Angle to previous plane (with approximate e.s.d.) = 2.77 (0.16)* -0.0032 (0.0026) N1 * 0.0072 (0.0030) C1 * -0.0025 (0.0030) C2 * -0.0058 (0.0029) C3 * 0.0096 (0.0029) C4 * -0.0052 (0.0027) C5 - 0.1020 (0.0055) Pt1Rms deviation of fitted atoms = 0.0061-14.3427 (0.0315) x - 0.4723 (0.0194) y + 13.9812 (0.0035) z = 5.0095 (0.0158)Angle to previous plane (with approximate e.s.d.) = 2.52 (0.18)* -0.0053 (0.0030) C6 * 0.0050 (0.0034) C7 * 0.0011 (0.0036) C8 * -0.0071 (0.0033) C9 * 0.0068 (0.0030) C10 * -0.0006 (0.0029) C11 0.0196 (0.0064) Pt1Rms deviation of fitted atoms = 0.0050-14.3368 (0.0269) x - 0.3580 (0.0127) y + 13.9887 (0.0034) z = 5.0906 (0.0091)Angle to previous plane (with approximate e.s.d.) = 0.66 (0.17)* 0.0000 (0.0001) N1 * -0.0003 (0.0009) C11 * -0.0002 (0.0007) Cl1 * 0.0004 (0.0015) Pt1 - 0.0669 (0.0049) S1 - 0.0453 (0.0077) O1Rms deviation of fitted atoms = 0.0003-14.6775 (0.0205) x - 0.4790 (0.0073) y + 13.9524 (0.0028) z = 4.9852 (0.0045)Angle to previous plane (with approximate e.s.d.) = 1.36 (0.14)* 0.0328 (0.0031) N1 * 0.0226 (0.0035) C1 * -0.0212 (0.0037) C2 * -0.0380 (0.0034) C3 * -0.0016 (0.0037) C4 * 0.0177 (0.0038) C5 * 0.0052 (0.0039) C6 * 0.0303 (0.0041) C7 * 0.0139 (0.0042) C8 * -0.0215 (0.0039) C9 * -0.0223 (0.0033) C10 * -0.0180 (0.0035) C11 - 3.4480 (0.0042) N1_$1 - 3.3136 (0.0062) C1_$1 - 3.5267 (0.0045) C5_$1 - 3.4606 (0.0029) Pt1_$1Rms deviation of fitted atoms = 0.0228-14.6775 (0.0205) x - 0.4790 (0.0073) y + 13.9524 (0.0028) z = 4.9852 (0.0045)Angle to previous plane (with approximate e.s.d.) = 0.00 (0.12)* 0.0328 (0.0031) N1 * 0.0226 (0.0035) C1 * -0.0212 (0.0037) C2 * -0.0380 (0.0034) C3 * -0.0016 (0.0037) C4 * 0.0177 (0.0038) C5 * 0.0052 (0.0039) C6 * 0.0303 (0.0041) C7 * 0.0139 (0.0042) C8 * -0.0215 (0.0039) C9 * -0.0223 (0.0033) C10 * -0.0180 (0.0035) C11 3.4700 (0.0040) N1_$2 3.4803 (0.0050) C1_$2 3.5240 (0.0050) C2_$2 3.4851 (0.0048) C5_$2 3.4977 (0.0053) C6_$2 3.5252 (0.0047) C10_$2 3.5209 (0.0046) C11_$2 3.5174 (0.0022) Pt1_$2Rms deviation of fitted atoms = 0.0228
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Pt10.121378 (8)0.501904 (14)0.501179 (13)0.01100 (7)
Cl10.16776 (5)0.27601 (10)0.54289 (9)0.0177 (2)
S10.23482 (5)0.57296 (10)0.61446 (9)0.0135 (2)
O10.25415 (16)0.7153 (3)0.6395 (3)0.0207 (7)
N10.01517 (18)0.4393 (4)0.3907 (3)0.0130 (7)
C1−0.0056 (2)0.3097 (4)0.3637 (4)0.0188 (9)
H10.02980.24120.40030.023*
C2−0.0769 (2)0.2759 (4)0.2843 (4)0.0198 (9)
H2−0.09050.18490.26560.024*
C3−0.1290 (2)0.3759 (5)0.2317 (4)0.0179 (9)
H3−0.17840.35420.17640.021*
C4−0.1079 (3)0.5076 (4)0.2611 (4)0.0156 (9)
H4−0.14280.57710.22760.019*
C5−0.0353 (2)0.5373 (4)0.3399 (4)0.0128 (8)
C6−0.0046 (2)0.6714 (4)0.3759 (4)0.0141 (8)
C7−0.0479 (2)0.7861 (4)0.3361 (4)0.0226 (10)
H7−0.09900.77840.28410.027*
C8−0.0161 (3)0.9104 (5)0.3726 (5)0.0286 (11)
H8−0.04530.98850.34550.034*
C90.0584 (2)0.9211 (4)0.4488 (4)0.0216 (9)
H90.08041.00660.47320.026*
C100.1010 (2)0.8066 (4)0.4897 (4)0.0158 (8)
H100.15190.81550.54330.019*
C110.0714 (2)0.6793 (4)0.4545 (4)0.0128 (8)
C120.2791 (2)0.4911 (4)0.7508 (4)0.0183 (9)
H12A0.33120.50890.79480.027*
H12B0.27060.39480.73890.027*
H12C0.25980.52470.79380.027*
C130.2836 (3)0.5101 (4)0.5582 (4)0.0198 (10)
H13A0.26360.54860.48160.030*
H13B0.27910.41270.55190.030*
H13C0.33480.53460.61010.030*
U11U22U33U12U13U23
Pt10.01044 (10)0.00879 (10)0.01265 (11)0.00073 (6)0.00587 (8)0.00039 (5)
Cl10.0155 (5)0.0109 (4)0.0218 (5)0.0024 (4)0.0076 (4)0.0010 (4)
S10.0114 (5)0.0116 (5)0.0152 (5)0.0004 (4)0.0062 (4)−0.0005 (4)
O10.0144 (15)0.0135 (15)0.0254 (17)−0.0006 (12)0.0061 (13)−0.0018 (13)
N10.0105 (16)0.0156 (17)0.0126 (16)0.0001 (15)0.0064 (14)0.0002 (14)
C10.019 (2)0.013 (2)0.020 (2)0.0007 (17)0.0082 (19)0.0022 (17)
C20.022 (2)0.013 (2)0.023 (2)−0.0050 (18)0.012 (2)−0.0042 (17)
C30.014 (2)0.021 (2)0.019 (2)−0.0037 (17)0.0096 (18)−0.0006 (17)
C40.017 (2)0.014 (2)0.017 (2)0.0010 (16)0.0104 (19)0.0008 (15)
C50.015 (2)0.0156 (19)0.0109 (19)0.0004 (17)0.0088 (17)0.0003 (16)
C60.015 (2)0.012 (2)0.015 (2)0.0003 (16)0.0081 (17)−0.0006 (15)
C70.017 (2)0.015 (2)0.032 (3)0.0022 (18)0.012 (2)0.0014 (19)
C80.021 (2)0.014 (2)0.041 (3)0.0067 (18)0.012 (2)0.003 (2)
C90.018 (2)0.012 (2)0.033 (3)−0.0042 (18)0.013 (2)−0.0027 (19)
C100.0127 (19)0.017 (2)0.016 (2)0.0009 (17)0.0064 (17)0.0016 (16)
C110.014 (2)0.0118 (18)0.015 (2)0.0023 (16)0.0100 (17)0.0014 (16)
C120.013 (2)0.021 (2)0.017 (2)0.0016 (16)0.0062 (19)0.0009 (16)
C130.017 (2)0.021 (2)0.025 (2)−0.0001 (17)0.014 (2)−0.0019 (17)
Pt1—C112.002 (4)C3—H30.9500
Pt1—N12.069 (3)C4—H40.9500
Pt1—S12.2181 (11)C5—C61.464 (6)
Pt1—Cl12.4202 (10)C6—C71.400 (6)
S1—O11.474 (3)C6—C111.413 (6)
S1—C121.782 (5)C7—C81.382 (6)
S1—C131.788 (5)C7—H70.9500
N1—C51.355 (6)C8—C91.386 (6)
N1—C11.359 (6)C8—H80.9500
C1—C21.377 (6)C9—C101.392 (6)
C2—C31.392 (6)C9—H90.9500
C3—C41.384 (6)C10—C111.393 (6)
C4—C51.385 (6)C10—H100.9500
Pt1—C4i3.525 (4)C12—H12A0.9800
Pt1—C4ii3.523 (4)C12—H12B0.9800
Pt1—Pt1i5.9946 (8)C12—H12C0.9800
Pt1—Pt1ii5.4225 (9)C13—H13A0.9800
C1—H10.9500C13—H13B0.9800
C2—H20.9500C13—H13C0.9800
C11—Pt1—N180.28 (16)C7—C6—C11121.5 (4)
C11—Pt1—S198.69 (12)C7—C6—C5122.1 (4)
N1—Pt1—S1177.97 (10)C11—C6—C5116.3 (4)
C11—Pt1—Cl1173.26 (12)C8—C7—C6119.8 (4)
N1—Pt1—Cl192.98 (10)C8—C7—H7120.1
S1—Pt1—Cl188.05 (4)C6—C7—H7120.1
O1—S1—C12106.22 (19)C7—C8—C9119.9 (4)
O1—S1—C13106.0 (2)C7—C8—H8120.0
C12—S1—C13101.9 (2)C9—C8—H8120.0
O1—S1—Pt1122.98 (13)C8—C9—C10120.0 (4)
C12—S1—Pt1109.74 (15)C8—C9—H9120.0
C13—S1—Pt1107.97 (16)C10—C9—H9120.0
C5—N1—C1119.6 (4)C9—C10—C11122.1 (4)
C5—N1—Pt1116.0 (3)C9—C10—H10119.0
C1—N1—Pt1124.4 (3)C11—C10—H10119.0
N1—C1—C2121.2 (4)C10—C11—C6116.7 (4)
N1—C1—H1119.4C10—C11—Pt1129.1 (3)
C2—C1—H1119.4C6—C11—Pt1114.2 (3)
C1—C2—C3119.5 (4)S1—C12—H12A109.5
C1—C2—H2120.2S1—C12—H12B109.5
C3—C2—H2120.2H12A—C12—H12B109.5
C4—C3—C2119.1 (4)S1—C12—H12C109.5
C4—C3—H3120.5H12A—C12—H12C109.5
C2—C3—H3120.5H12B—C12—H12C109.5
C3—C4—C5119.5 (4)S1—C13—H13A109.5
C3—C4—H4120.3S1—C13—H13B109.5
C5—C4—H4120.3H13A—C13—H13B109.5
N1—C5—C4121.2 (4)S1—C13—H13C109.5
N1—C5—C6113.2 (4)H13A—C13—H13C109.5
C4—C5—C6125.6 (4)H13B—C13—H13C109.5
C11—Pt1—S1—O12.4 (2)C4—C5—C6—C72.9 (7)
Cl1—Pt1—S1—O1−177.83 (17)N1—C5—C6—C111.3 (5)
C5—N1—C1—C20.9 (6)C4—C5—C6—C11−177.9 (4)
N1—C1—C2—C3−0.8 (7)C11—C6—C7—C80.9 (7)
C1—C2—C3—C4−0.4 (6)C5—C6—C7—C8−179.9 (4)
C2—C3—C4—C51.6 (6)C6—C7—C8—C9−0.3 (8)
C1—N1—C5—C40.3 (6)C7—C8—C9—C10−0.9 (7)
C1—N1—C5—C6−178.9 (4)C8—C9—C10—C111.4 (7)
C3—C4—C5—N1−1.5 (6)C9—C10—C11—C6−0.8 (6)
C3—C4—C5—C6177.5 (4)C7—C6—C11—C10−0.4 (6)
N1—C5—C6—C7−178.0 (4)C5—C6—C11—C10−179.6 (4)
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