Literature DB >> 21200971

2-Acetyl-pyrazine 4-methyl-thio-semi-carbazone.

Jing Zhou1, Yu-Xia Wang, Chun-Ling Chen, Ming-Xue Li.   

Abstract

The title compound, C(8)H(11)N(5)S, has been prepared by the reaction of 2-acetyl-pyrazine with 4-methyl-3-thio-semi-carbazide. It exists in the thione form and adopts the E configuration. The mol-ecules are connected by the inter-molecular N-H⋯N and N-H⋯S inter-actions.

Entities:  

Year:  2007        PMID: 21200971      PMCID: PMC2915049          DOI: 10.1107/S160053680706285X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Hong et al. (2004 ▶); Latheef et al. (2006 ▶); Liberta & West (1992 ▶); Mendes et al. (2001 ▶); Padhye & Kauffman (1985 ▶).

Experimental

Crystal data

C8H11N5S M = 209.28 Monoclinic, a = 9.870 (8) Å b = 5.976 (5) Å c = 17.517 (14) Å β = 91.251 (9)° V = 1032.8 (14) Å3 Z = 4 Mo Kα radiation μ = 0.28 mm−1 T = 296 (2) K 0.20 × 0.18 × 0.16 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: none 9944 measured reflections 1919 independent reflections 1595 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.100 S = 1.05 1919 reflections 129 parameters H-atom parameters constrained Δρmax = 0.22 e Å−3 Δρmin = −0.19 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT-Plus (Bruker, 2001 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997a ▶); molecular graphics: SHELXTL (Sheldrick, 1997b ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053680706285X/at2513sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680706285X/at2513Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H11N5SF000 = 440
Mr = 209.28Dx = 1.346 Mg m3
Monoclinic, P21/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3140 reflections
a = 9.870 (8) Åθ = 2.3–26.0º
b = 5.976 (5) ŵ = 0.28 mm1
c = 17.517 (14) ÅT = 296 (2) K
β = 91.251 (9)ºBlock, colourless
V = 1032.8 (14) Å30.20 × 0.18 × 0.16 mm
Z = 4
Bruker SMART APEX CCD area-detector diffractometer1595 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.028
Monochromator: graphiteθmax = 25.5º
T = 296(2) Kθmin = 2.1º
0.3° wide ω scansh = −11→11
Absorption correction: nonek = −7→7
9944 measured reflectionsl = −21→21
1919 independent reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.036H-atom parameters constrained
wR(F2) = 0.100  w = 1/[σ2(Fo2) + (0.0519P)2 + 0.2669P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max < 0.001
1919 reflectionsΔρmax = 0.22 e Å3
129 parametersΔρmin = −0.19 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.53153 (5)0.14546 (9)0.39197 (3)0.0578 (2)
C10.3602 (2)0.1901 (4)0.24436 (12)0.0638 (6)
H1A0.29450.18580.20310.096*
H1B0.44830.15670.22520.096*
H1C0.36100.33650.26690.096*
C20.39403 (17)−0.0043 (3)0.36625 (9)0.0403 (4)
C30.20657 (16)−0.4638 (3)0.43186 (9)0.0381 (4)
C40.27288 (19)−0.5396 (3)0.50496 (10)0.0517 (5)
H4A0.3690−0.51660.50260.078*
H4B0.2547−0.69580.51250.078*
H4C0.2376−0.45520.54670.078*
C50.08835 (16)−0.5912 (3)0.40117 (9)0.0373 (4)
C60.01556 (17)−0.5220 (3)0.33622 (9)0.0457 (4)
H6A0.0401−0.38870.31290.055*
C7−0.1190 (2)−0.8254 (3)0.34285 (11)0.0549 (5)
H7A−0.1901−0.91290.32400.066*
C8−0.0499 (2)−0.8930 (4)0.40744 (12)0.0626 (6)
H8A−0.0764−1.02440.43130.075*
N10.32507 (15)0.0258 (3)0.30149 (8)0.0480 (4)
H1D0.2552−0.05700.29280.058*
N20.35053 (14)−0.1701 (2)0.41299 (8)0.0453 (4)
H2A0.3907−0.19410.45630.054*
N30.24209 (14)−0.2982 (2)0.39019 (8)0.0416 (4)
N4−0.08728 (15)−0.6382 (3)0.30628 (9)0.0517 (4)
N50.05389 (16)−0.7775 (3)0.43754 (9)0.0536 (4)
U11U22U33U12U13U23
S10.0550 (3)0.0710 (4)0.0472 (3)−0.0316 (3)−0.0039 (2)−0.0010 (2)
C10.0728 (14)0.0604 (13)0.0579 (12)−0.0125 (11)−0.0085 (10)0.0176 (10)
C20.0397 (9)0.0426 (10)0.0385 (9)−0.0058 (7)0.0000 (7)−0.0041 (7)
C30.0383 (9)0.0405 (9)0.0352 (8)−0.0057 (7)−0.0026 (7)−0.0030 (7)
C40.0545 (11)0.0562 (12)0.0439 (10)−0.0144 (9)−0.0136 (8)0.0051 (9)
C50.0384 (9)0.0394 (9)0.0339 (8)−0.0053 (7)−0.0001 (7)−0.0016 (7)
C60.0470 (10)0.0499 (11)0.0397 (9)−0.0115 (8)−0.0073 (8)0.0044 (8)
C70.0489 (11)0.0626 (13)0.0532 (11)−0.0211 (9)−0.0035 (9)−0.0084 (10)
C80.0685 (14)0.0562 (13)0.0627 (13)−0.0295 (11)−0.0104 (10)0.0107 (10)
N10.0479 (9)0.0490 (9)0.0466 (9)−0.0134 (7)−0.0081 (7)0.0070 (7)
N20.0457 (8)0.0504 (9)0.0393 (8)−0.0180 (7)−0.0099 (6)0.0051 (7)
N30.0392 (8)0.0452 (8)0.0402 (8)−0.0113 (6)−0.0050 (6)−0.0007 (6)
N40.0468 (9)0.0641 (11)0.0435 (8)−0.0125 (8)−0.0099 (7)−0.0018 (8)
N50.0572 (10)0.0522 (9)0.0509 (9)−0.0197 (8)−0.0109 (7)0.0117 (8)
S1—C21.6789 (19)C5—N51.331 (2)
C1—N11.449 (2)C5—C61.395 (2)
C1—H1A0.9600C6—N41.328 (2)
C1—H1B0.9600C6—H6A0.9300
C1—H1C0.9600C7—N41.330 (3)
C2—N11.322 (2)C7—C81.369 (3)
C2—N21.361 (2)C7—H7A0.9300
C3—N31.283 (2)C8—N51.334 (2)
C3—C51.484 (2)C8—H8A0.9300
C3—C41.496 (2)N1—H1D0.8600
C4—H4A0.9600N2—N31.368 (2)
C4—H4B0.9600N2—H2A0.8600
C4—H4C0.9600
N1—C1—H1A109.5C6—C5—C3122.00 (15)
N1—C1—H1B109.5N4—C6—C5122.84 (17)
H1A—C1—H1B109.5N4—C6—H6A118.6
N1—C1—H1C109.5C5—C6—H6A118.6
H1A—C1—H1C109.5N4—C7—C8121.85 (17)
H1B—C1—H1C109.5N4—C7—H7A119.1
N1—C2—N2116.88 (15)C8—C7—H7A119.1
N1—C2—S1123.73 (14)N5—C8—C7122.59 (18)
N2—C2—S1119.38 (13)N5—C8—H8A118.7
N3—C3—C5114.34 (14)C7—C8—H8A118.7
N3—C3—C4126.94 (15)C2—N1—C1123.93 (16)
C5—C3—C4118.71 (15)C2—N1—H1D118.0
C3—C4—H4A109.5C1—N1—H1D118.0
C3—C4—H4B109.5C2—N2—N3119.13 (14)
H4A—C4—H4B109.5C2—N2—H2A120.4
C3—C4—H4C109.5N3—N2—H2A120.4
H4A—C4—H4C109.5C3—N3—N2119.15 (14)
H4B—C4—H4C109.5C6—N4—C7115.83 (16)
N5—C5—C6120.41 (15)C5—N5—C8116.45 (16)
N5—C5—C3117.58 (15)
D—H···AD—HH···AD···AD—H···A
N1—H1D···N4i0.862.423.137 (3)141
N2—H2A···S1ii0.862.773.588 (3)161
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1D⋯N4i0.862.423.137 (3)141
N2—H2A⋯S1ii0.862.773.588 (3)161

Symmetry codes: (i) ; (ii) .

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