| Literature DB >> 21200971 |
Jing Zhou1, Yu-Xia Wang, Chun-Ling Chen, Ming-Xue Li.
Abstract
The title compound, C(8)H(11)N(5)S, has been prepared by the reaction of 2-acetyl-pyrazine with 4-methyl-3-thio-semi-carbazide. It exists in the thione form and adopts the E configuration. The mol-ecules are connected by the inter-molecular N-H⋯N and N-H⋯S inter-actions.Entities:
Year: 2007 PMID: 21200971 PMCID: PMC2915049 DOI: 10.1107/S160053680706285X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C8H11N5S | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 3140 reflections |
| θ = 2.3–26.0º | |
| µ = 0.28 mm−1 | |
| β = 91.251 (9)º | Block, colourless |
| 0.20 × 0.18 × 0.16 mm | |
| Bruker SMART APEX CCD area-detector diffractometer | 1595 reflections with |
| Radiation source: fine-focus sealed tube | |
| Monochromator: graphite | θmax = 25.5º |
| θmin = 2.1º | |
| 0.3° wide ω scans | |
| Absorption correction: none | |
| 9944 measured reflections | |
| 1919 independent reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| | |
| (Δ/σ)max < 0.001 | |
| 1919 reflections | Δρmax = 0.22 e Å−3 |
| 129 parameters | Δρmin = −0.19 e Å−3 |
| Primary atom site location: structure-invariant direct methods | Extinction correction: none |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| S1 | 0.53153 (5) | 0.14546 (9) | 0.39197 (3) | 0.0578 (2) | |
| C1 | 0.3602 (2) | 0.1901 (4) | 0.24436 (12) | 0.0638 (6) | |
| H1A | 0.2945 | 0.1858 | 0.2031 | 0.096* | |
| H1B | 0.4483 | 0.1567 | 0.2252 | 0.096* | |
| H1C | 0.3610 | 0.3365 | 0.2669 | 0.096* | |
| C2 | 0.39403 (17) | −0.0043 (3) | 0.36625 (9) | 0.0403 (4) | |
| C3 | 0.20657 (16) | −0.4638 (3) | 0.43186 (9) | 0.0381 (4) | |
| C4 | 0.27288 (19) | −0.5396 (3) | 0.50496 (10) | 0.0517 (5) | |
| H4A | 0.3690 | −0.5166 | 0.5026 | 0.078* | |
| H4B | 0.2547 | −0.6958 | 0.5125 | 0.078* | |
| H4C | 0.2376 | −0.4552 | 0.5467 | 0.078* | |
| C5 | 0.08835 (16) | −0.5912 (3) | 0.40117 (9) | 0.0373 (4) | |
| C6 | 0.01556 (17) | −0.5220 (3) | 0.33622 (9) | 0.0457 (4) | |
| H6A | 0.0401 | −0.3887 | 0.3129 | 0.055* | |
| C7 | −0.1190 (2) | −0.8254 (3) | 0.34285 (11) | 0.0549 (5) | |
| H7A | −0.1901 | −0.9129 | 0.3240 | 0.066* | |
| C8 | −0.0499 (2) | −0.8930 (4) | 0.40744 (12) | 0.0626 (6) | |
| H8A | −0.0764 | −1.0244 | 0.4313 | 0.075* | |
| N1 | 0.32507 (15) | 0.0258 (3) | 0.30149 (8) | 0.0480 (4) | |
| H1D | 0.2552 | −0.0570 | 0.2928 | 0.058* | |
| N2 | 0.35053 (14) | −0.1701 (2) | 0.41299 (8) | 0.0453 (4) | |
| H2A | 0.3907 | −0.1941 | 0.4563 | 0.054* | |
| N3 | 0.24209 (14) | −0.2982 (2) | 0.39019 (8) | 0.0416 (4) | |
| N4 | −0.08728 (15) | −0.6382 (3) | 0.30628 (9) | 0.0517 (4) | |
| N5 | 0.05389 (16) | −0.7775 (3) | 0.43754 (9) | 0.0536 (4) |
| S1 | 0.0550 (3) | 0.0710 (4) | 0.0472 (3) | −0.0316 (3) | −0.0039 (2) | −0.0010 (2) |
| C1 | 0.0728 (14) | 0.0604 (13) | 0.0579 (12) | −0.0125 (11) | −0.0085 (10) | 0.0176 (10) |
| C2 | 0.0397 (9) | 0.0426 (10) | 0.0385 (9) | −0.0058 (7) | 0.0000 (7) | −0.0041 (7) |
| C3 | 0.0383 (9) | 0.0405 (9) | 0.0352 (8) | −0.0057 (7) | −0.0026 (7) | −0.0030 (7) |
| C4 | 0.0545 (11) | 0.0562 (12) | 0.0439 (10) | −0.0144 (9) | −0.0136 (8) | 0.0051 (9) |
| C5 | 0.0384 (9) | 0.0394 (9) | 0.0339 (8) | −0.0053 (7) | −0.0001 (7) | −0.0016 (7) |
| C6 | 0.0470 (10) | 0.0499 (11) | 0.0397 (9) | −0.0115 (8) | −0.0073 (8) | 0.0044 (8) |
| C7 | 0.0489 (11) | 0.0626 (13) | 0.0532 (11) | −0.0211 (9) | −0.0035 (9) | −0.0084 (10) |
| C8 | 0.0685 (14) | 0.0562 (13) | 0.0627 (13) | −0.0295 (11) | −0.0104 (10) | 0.0107 (10) |
| N1 | 0.0479 (9) | 0.0490 (9) | 0.0466 (9) | −0.0134 (7) | −0.0081 (7) | 0.0070 (7) |
| N2 | 0.0457 (8) | 0.0504 (9) | 0.0393 (8) | −0.0180 (7) | −0.0099 (6) | 0.0051 (7) |
| N3 | 0.0392 (8) | 0.0452 (8) | 0.0402 (8) | −0.0113 (6) | −0.0050 (6) | −0.0007 (6) |
| N4 | 0.0468 (9) | 0.0641 (11) | 0.0435 (8) | −0.0125 (8) | −0.0099 (7) | −0.0018 (8) |
| N5 | 0.0572 (10) | 0.0522 (9) | 0.0509 (9) | −0.0197 (8) | −0.0109 (7) | 0.0117 (8) |
| S1—C2 | 1.6789 (19) | C5—N5 | 1.331 (2) |
| C1—N1 | 1.449 (2) | C5—C6 | 1.395 (2) |
| C1—H1A | 0.9600 | C6—N4 | 1.328 (2) |
| C1—H1B | 0.9600 | C6—H6A | 0.9300 |
| C1—H1C | 0.9600 | C7—N4 | 1.330 (3) |
| C2—N1 | 1.322 (2) | C7—C8 | 1.369 (3) |
| C2—N2 | 1.361 (2) | C7—H7A | 0.9300 |
| C3—N3 | 1.283 (2) | C8—N5 | 1.334 (2) |
| C3—C5 | 1.484 (2) | C8—H8A | 0.9300 |
| C3—C4 | 1.496 (2) | N1—H1D | 0.8600 |
| C4—H4A | 0.9600 | N2—N3 | 1.368 (2) |
| C4—H4B | 0.9600 | N2—H2A | 0.8600 |
| C4—H4C | 0.9600 | ||
| N1—C1—H1A | 109.5 | C6—C5—C3 | 122.00 (15) |
| N1—C1—H1B | 109.5 | N4—C6—C5 | 122.84 (17) |
| H1A—C1—H1B | 109.5 | N4—C6—H6A | 118.6 |
| N1—C1—H1C | 109.5 | C5—C6—H6A | 118.6 |
| H1A—C1—H1C | 109.5 | N4—C7—C8 | 121.85 (17) |
| H1B—C1—H1C | 109.5 | N4—C7—H7A | 119.1 |
| N1—C2—N2 | 116.88 (15) | C8—C7—H7A | 119.1 |
| N1—C2—S1 | 123.73 (14) | N5—C8—C7 | 122.59 (18) |
| N2—C2—S1 | 119.38 (13) | N5—C8—H8A | 118.7 |
| N3—C3—C5 | 114.34 (14) | C7—C8—H8A | 118.7 |
| N3—C3—C4 | 126.94 (15) | C2—N1—C1 | 123.93 (16) |
| C5—C3—C4 | 118.71 (15) | C2—N1—H1D | 118.0 |
| C3—C4—H4A | 109.5 | C1—N1—H1D | 118.0 |
| C3—C4—H4B | 109.5 | C2—N2—N3 | 119.13 (14) |
| H4A—C4—H4B | 109.5 | C2—N2—H2A | 120.4 |
| C3—C4—H4C | 109.5 | N3—N2—H2A | 120.4 |
| H4A—C4—H4C | 109.5 | C3—N3—N2 | 119.15 (14) |
| H4B—C4—H4C | 109.5 | C6—N4—C7 | 115.83 (16) |
| N5—C5—C6 | 120.41 (15) | C5—N5—C8 | 116.45 (16) |
| N5—C5—C3 | 117.58 (15) |
| H··· | ||||
| N1—H1D···N4i | 0.86 | 2.42 | 3.137 (3) | 141 |
| N2—H2A···S1ii | 0.86 | 2.77 | 3.588 (3) | 161 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1 | 0.86 | 2.42 | 3.137 (3) | 141 |
| N2—H2 | 0.86 | 2.77 | 3.588 (3) | 161 |
Symmetry codes: (i) ; (ii) .