Literature DB >> 21200917

3-Butyl-2-propyl-amino-1-benzo-thieno[3,2-d]pyrimidin-4(3H)-one.

Shengzhen Xu1.   

Abstract

In the title compound, C(17)H(21)N(3)OS, the propyl and butyl groups are disordered over two positions; site occupation factors are 0.304 (10) and 0.696 (10). The three fused rings are coplanar. In the crystal structure, inter-molecular N-H⋯O and C-H⋯O hydrogen bonds link the mol-ecules. Further stability is provided by offset π-π stacking inter-actions. Adjacent thienophene-pyrimidine and pyrimidine-benzene rings have centroid-centroid distances of 3.96 (1) and 3.55 (2) Å, respectively.

Entities:  

Year:  2007        PMID: 21200917      PMCID: PMC2915000          DOI: 10.1107/S1600536807062484

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see: Chambhare et al. (2003 ▶); Janiak (2000 ▶). For related literature, see: Ding et al. (2004 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C17H21N3OS M = 315.43 Monoclinic, a = 11.4322 (6) Å b = 14.2791 (8) Å c = 11.6704 (6) Å β = 116.606 (1)° V = 1703.36 (16) Å3 Z = 4 Mo Kα radiation μ = 0.20 mm−1 T = 298 (2) K 0.30 × 0.20 × 0.20 mm

Data collection

Bruker SMART 4K CCD area-detector diffractometer Absorption correction: none 15640 measured reflections 3712 independent reflections 2599 reflections with I > 2σ(I) R int = 0.054

Refinement

R[F 2 > 2σ(F 2)] = 0.058 wR(F 2) = 0.175 S = 1.04 3712 reflections 279 parameters 23 restraints H-atom parameters constrained Δρmax = 0.35 e Å−3 Δρmin = −0.16 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997 ▶); molecular graphics: PLATON (Spek, 2003 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536807062484/hk2396sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536807062484/hk2396Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H21N3OSF000 = 672
Mr = 315.43Dx = 1.230 Mg m3
Monoclinic, P21/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 4476 reflections
a = 11.4322 (6) Åθ = 2.4–24.2º
b = 14.2791 (8) ŵ = 0.20 mm1
c = 11.6704 (6) ÅT = 298 (2) K
β = 116.606 (1)ºBlock, colorless
V = 1703.36 (16) Å30.30 × 0.20 × 0.20 mm
Z = 4
Bruker SMART 4K CCD area-detector diffractometer2599 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.054
Monochromator: graphiteθmax = 27.0º
T = 298(2) Kθmin = 2.0º
φ and ω scansh = −14→14
Absorption correction: nonek = −17→18
15640 measured reflectionsl = −14→14
3712 independent reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.058H-atom parameters constrained
wR(F2) = 0.175  w = 1/[σ2(Fo2) + (0.107P)2] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max = 0.004
3712 reflectionsΔρmax = 0.35 e Å3
279 parametersΔρmin = −0.15 e Å3
23 restraintsExtinction correction: none
Primary atom site location: structure-invariant direct methods
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
S10.13711 (6)0.04643 (4)1.26890 (6)0.0767 (3)
O10.22957 (17)0.23409 (10)1.18589 (13)0.0782 (5)
N10.21439 (19)−0.00118 (12)0.97855 (15)0.0679 (5)
N20.25553 (18)0.16172 (11)1.02369 (15)0.0646 (5)
N30.2992 (7)0.0903 (4)0.8663 (6)0.0835 (17)0.696 (10)
H3A0.32150.14500.85240.100*0.696 (10)
N3'0.2371 (11)0.0885 (9)0.8333 (9)0.057 (2)0.304 (10)
H3'0.22570.14270.79770.068*0.304 (10)
C10.14037 (18)−0.08829 (14)1.11773 (18)0.0588 (5)
C20.1241 (2)−0.17839 (15)1.0674 (2)0.0775 (6)
H20.1433−0.19130.99950.093*
C30.0795 (3)−0.24799 (17)1.1191 (3)0.0921 (8)
H30.0683−0.30821.08550.110*
C40.0510 (3)−0.2299 (2)1.2203 (3)0.0969 (8)
H40.0207−0.27801.25390.116*
C50.0668 (3)−0.14217 (19)1.2713 (3)0.0897 (7)
H50.0479−0.13031.33960.108*
C60.1117 (2)−0.07033 (16)1.2202 (2)0.0663 (5)
C70.18358 (19)−0.00435 (13)1.07820 (16)0.0550 (5)
C80.1850 (2)0.07176 (14)1.15013 (17)0.0569 (5)
C90.2227 (2)0.16126 (14)1.12618 (17)0.0585 (5)
C100.2479 (2)0.08120 (15)0.95393 (19)0.0708 (6)
C110.3166 (9)0.0091 (5)0.7964 (8)0.115 (3)0.696 (10)
H110.3261−0.04900.84460.138*0.696 (10)
C11'0.2443 (15)0.0099 (9)0.7669 (9)0.085 (5)0.304 (10)
H11'0.1795−0.03190.77330.102*0.304 (10)
C120.4388 (5)0.0288 (5)0.7817 (5)0.118 (2)0.696 (10)
H12A0.42920.08730.73770.177*0.696 (10)
H12B0.4525−0.02060.73320.177*0.696 (10)
H12C0.51250.03240.86480.177*0.696 (10)
C12'0.3646 (15)−0.0512 (13)0.8141 (10)0.149 (9)0.304 (10)
H12D0.4229−0.02770.78200.223*0.304 (10)
H12E0.3395−0.11420.78430.223*0.304 (10)
H12F0.4080−0.05070.90610.223*0.304 (10)
C130.1988 (6)0.0047 (7)0.6697 (10)0.139 (4)0.696 (10)
H13A0.1233−0.01010.68210.208*0.696 (10)
H13B0.2109−0.04290.61790.208*0.696 (10)
H13C0.18620.06410.62740.208*0.696 (10)
C13'0.1899 (19)0.0248 (14)0.6251 (10)0.128 (8)0.304 (10)
H13D0.10810.05740.59450.193*0.304 (10)
H13E0.1764−0.03480.58290.193*0.304 (10)
H13F0.25040.06110.60720.193*0.304 (10)
C140.3278 (9)0.2503 (6)1.0136 (9)0.079 (3)0.622 (11)
H14A0.30950.25840.92470.095*0.622 (11)
H14B0.29140.30401.03740.095*0.622 (11)
C14'0.2809 (11)0.2515 (8)0.9807 (12)0.055 (2)0.378 (11)
H14C0.25380.30281.01790.066*0.378 (11)
H14D0.23560.25640.88810.066*0.378 (11)
C150.4741 (8)0.2515 (6)1.0939 (8)0.128 (3)0.622 (11)
H15A0.51200.19761.07250.154*0.622 (11)
H15B0.49410.24681.18380.154*0.622 (11)
C15'0.4291 (10)0.2516 (6)1.0287 (12)0.082 (3)0.378 (11)
H15C0.45550.19830.99410.099*0.378 (11)
H15D0.47330.24791.12150.099*0.378 (11)
C160.5353 (10)0.3408 (6)1.0727 (9)0.174 (4)0.622 (11)
H16A0.47670.39311.06030.209*0.622 (11)
H16B0.61660.35351.14830.209*0.622 (11)
C16'0.4644 (9)0.3432 (6)0.9833 (10)0.100 (3)0.378 (11)
H16C0.42880.34310.89070.120*0.378 (11)
H16D0.42740.39591.00830.120*0.378 (11)
C170.5612 (12)0.3325 (9)0.9614 (9)0.179 (4)0.622 (11)
H17A0.61540.27880.97140.269*0.622 (11)
H17B0.60530.38780.95430.269*0.622 (11)
H17C0.48000.32550.88540.269*0.622 (11)
C17'0.6098 (10)0.3518 (14)1.0427 (18)0.194 (9)0.378 (11)
H17D0.64840.30931.11360.291*0.378 (11)
H17E0.63470.41481.07250.291*0.378 (11)
H17F0.63990.33700.98010.291*0.378 (11)
U11U22U33U12U13U23
S10.1169 (5)0.0600 (4)0.0808 (4)−0.0027 (3)0.0688 (4)−0.0042 (3)
O10.1334 (13)0.0518 (9)0.0645 (8)−0.0032 (8)0.0578 (9)−0.0075 (7)
N10.1108 (14)0.0461 (10)0.0552 (9)0.0177 (9)0.0447 (9)0.0053 (7)
N20.1050 (12)0.0456 (9)0.0533 (9)0.0107 (8)0.0445 (9)0.0074 (7)
N30.142 (5)0.057 (2)0.080 (3)0.027 (3)0.075 (4)0.017 (2)
N3'0.087 (6)0.043 (3)0.047 (4)0.017 (4)0.035 (4)0.007 (3)
C10.0655 (11)0.0501 (11)0.0567 (10)0.0086 (9)0.0237 (9)0.0051 (8)
C20.1061 (17)0.0522 (13)0.0719 (13)0.0070 (11)0.0378 (12)0.0010 (10)
C30.1158 (19)0.0537 (14)0.0965 (18)−0.0102 (13)0.0384 (16)−0.0010 (13)
C40.112 (2)0.0737 (18)0.109 (2)−0.0186 (15)0.0540 (17)0.0101 (15)
C50.1149 (19)0.0739 (17)0.1055 (19)−0.0128 (14)0.0718 (16)0.0048 (14)
C60.0756 (13)0.0568 (12)0.0731 (12)0.0011 (9)0.0393 (11)0.0019 (10)
C70.0678 (11)0.0480 (11)0.0457 (9)0.0132 (8)0.0222 (8)0.0056 (8)
C80.0749 (12)0.0507 (11)0.0504 (10)0.0084 (9)0.0329 (9)0.0028 (8)
C90.0841 (13)0.0485 (11)0.0482 (10)0.0082 (9)0.0343 (9)0.0024 (8)
C100.1190 (17)0.0495 (12)0.0595 (11)0.0226 (11)0.0538 (12)0.0090 (9)
C110.212 (8)0.070 (3)0.125 (5)0.050 (5)0.132 (6)0.024 (3)
C11'0.175 (13)0.053 (6)0.055 (6)0.052 (8)0.078 (8)0.018 (4)
C120.126 (4)0.135 (5)0.105 (3)0.038 (3)0.063 (3)−0.008 (3)
C12'0.204 (15)0.134 (14)0.103 (8)0.106 (12)0.065 (8)0.010 (7)
C130.131 (6)0.111 (6)0.210 (11)−0.033 (4)0.109 (7)−0.089 (7)
C13'0.221 (19)0.089 (10)0.040 (5)0.019 (10)0.028 (6)−0.016 (5)
C140.126 (7)0.059 (3)0.053 (4)0.006 (4)0.041 (5)0.013 (2)
C14'0.088 (6)0.038 (3)0.049 (6)0.004 (4)0.039 (5)0.002 (3)
C150.113 (5)0.155 (6)0.090 (5)−0.047 (4)0.022 (4)0.025 (4)
C15'0.078 (6)0.084 (5)0.080 (6)−0.012 (4)0.032 (5)0.014 (4)
C160.145 (7)0.237 (10)0.135 (8)−0.084 (6)0.058 (6)−0.015 (6)
C16'0.112 (6)0.109 (6)0.073 (5)−0.034 (5)0.034 (5)−0.001 (4)
C170.162 (9)0.259 (12)0.140 (7)−0.051 (8)0.088 (7)0.006 (8)
C17'0.157 (12)0.262 (19)0.145 (14)−0.116 (13)0.052 (10)0.013 (14)
N3—C111.482 (9)C12'—H12D0.9600
N3—H3A0.8600C12'—H12E0.9600
N3'—C11'1.387 (16)C12'—H12F0.9600
N3'—H3'0.8600C13—H13A0.9600
C1—C21.392 (3)C13—H13B0.9600
C1—C61.397 (3)C13—H13C0.9600
C1—C71.448 (3)C13'—H13D0.9600
C2—C31.374 (3)C13'—H13E0.9600
C2—H20.9300C13'—H13F0.9600
C3—C41.384 (4)C14—C151.507 (7)
C3—H30.9300C14—N21.544 (7)
C4—C51.364 (4)C14—H14A0.9700
C4—H40.9300C14—H14B0.9700
C5—C61.395 (3)C14'—N21.452 (9)
C5—H50.9300C14'—C15'1.528 (9)
C6—S11.743 (2)C14'—H14C0.9700
C7—N11.359 (3)C14'—H14D0.9700
C7—C81.369 (3)C15—C161.528 (7)
C8—C91.416 (3)C15—H15A0.9700
C8—S11.741 (2)C15—H15B0.9700
C9—O11.235 (2)C15'—C16'1.531 (8)
C9—N21.405 (2)C15'—H15C0.9700
C10—N11.308 (3)C15'—H15D0.9700
C10—N3'1.361 (10)C16—C171.461 (8)
C10—N21.389 (3)C16—H16A0.9700
C10—N31.394 (5)C16—H16B0.9700
C11—C131.490 (7)C16'—C17'1.493 (9)
C11—C121.508 (7)C16'—H16C0.9700
C11—H110.9800C16'—H16D0.9700
C11'—C13'1.499 (9)C17—H17A0.9600
C11'—C12'1.510 (9)C17—H17B0.9600
C11'—H11'0.9800C17—H17C0.9600
C12—H12A0.9600C17'—H17D0.9600
C12—H12B0.9600C17'—H17E0.9600
C12—H12C0.9600C17'—H17F0.9600
C8—S1—C690.27 (10)C12'—C11'—H11'102.4
C10—N1—C7115.57 (16)C11'—C12'—H12D109.5
C10—N2—C9121.65 (17)C11'—C12'—H12E109.5
C10—N2—C14'119.9 (6)H12D—C12'—H12E109.5
C9—N2—C14'118.0 (6)C11'—C12'—H12F109.5
C10—N2—C14121.9 (4)H12D—C12'—H12F109.5
C9—N2—C14115.1 (4)H12E—C12'—H12F109.5
C10—N3—C11122.4 (6)C11'—C13'—H13D109.5
C10—N3—H3A118.8C11'—C13'—H13E109.5
C11—N3—H3A118.8H13D—C13'—H13E109.5
C10—N3'—C11'121.0 (10)C11'—C13'—H13F109.5
C10—N3'—H3'119.5H13D—C13'—H13F109.5
C11'—N3'—H3'119.5H13E—C13'—H13F109.5
C2—C1—C6119.5 (2)C15—C14—N2116.4 (6)
C2—C1—C7129.1 (2)C15—C14—H14A108.2
C6—C1—C7111.39 (18)N2—C14—H14A108.2
C3—C2—C1119.2 (2)C15—C14—H14B108.2
C3—C2—H2120.4N2—C14—H14B108.2
C1—C2—H2120.4H14A—C14—H14B107.3
C2—C3—C4121.1 (2)N2—C14'—C15'103.6 (7)
C2—C3—H3119.5N2—C14'—H14C111.0
C4—C3—H3119.5C15'—C14'—H14C111.0
C5—C4—C3120.5 (2)N2—C14'—H14D111.0
C5—C4—H4119.7C15'—C14'—H14D111.0
C3—C4—H4119.7H14C—C14'—H14D109.0
C4—C5—C6119.4 (3)C14—C15—C16111.7 (6)
C4—C5—H5120.3C14—C15—H15A109.3
C6—C5—H5120.3C16—C15—H15A109.3
C5—C6—C1120.2 (2)C14—C15—H15B109.3
C5—C6—S1127.07 (19)C16—C15—H15B109.3
C1—C6—S1112.71 (16)H15A—C15—H15B107.9
N1—C7—C8124.20 (18)C14'—C15'—C16'107.1 (7)
N1—C7—C1123.82 (17)C14'—C15'—H15C110.3
C8—C7—C1111.94 (18)C16'—C15'—H15C110.3
C7—C8—C9121.09 (18)C14'—C15'—H15D110.3
C7—C8—S1113.69 (15)C16'—C15'—H15D110.3
C9—C8—S1125.23 (15)H15C—C15'—H15D108.5
O1—C9—N2120.20 (18)C17—C16—C15111.5 (7)
O1—C9—C8126.63 (18)C17—C16—H16A109.3
N2—C9—C8113.17 (16)C15—C16—H16A109.3
N1—C10—N3'113.4 (6)C17—C16—H16B109.3
N1—C10—N2124.28 (18)C15—C16—H16B109.3
N3'—C10—N2119.7 (5)H16A—C16—H16B108.0
N1—C10—N3120.3 (3)C17'—C16'—C15'108.7 (7)
N2—C10—N3114.6 (3)C17'—C16'—H16C109.9
N3—C11—C13107.2 (6)C15'—C16'—H16C109.9
N3—C11—C12106.0 (6)C17'—C16'—H16D109.9
C13—C11—C12111.5 (5)C15'—C16'—H16D109.9
N3—C11—H11110.7H16C—C16'—H16D108.3
C13—C11—H11110.7C16'—C17'—H17D109.5
C12—C11—H11110.7C16'—C17'—H17E109.5
N3'—C11'—C13'113.8 (11)H17D—C17'—H17E109.5
N3'—C11'—C12'122.5 (11)C16'—C17'—H17F109.5
C13'—C11'—C12'110.1 (8)H17D—C17'—H17F109.5
N3'—C11'—H11'102.4H17E—C17'—H17F109.5
C13'—C11'—H11'102.4
C6—C1—C2—C30.3 (3)C14—C15—C16—C17−84.7 (12)
C7—C1—C2—C3−178.9 (2)N2—C14'—C15'—C16'178.1 (8)
C1—C2—C3—C4−0.2 (4)C14'—C15'—C16'—C17'172.6 (15)
C2—C3—C4—C5−0.1 (4)N3'—C10—N1—C7−160.1 (5)
C3—C4—C5—C60.3 (4)N2—C10—N1—C71.3 (3)
C4—C5—C6—C1−0.1 (4)N3—C10—N1—C7170.8 (4)
C4—C5—C6—S1179.2 (2)C8—C7—N1—C100.5 (3)
C2—C1—C6—C5−0.2 (3)C1—C7—N1—C10178.05 (18)
C7—C1—C6—C5179.2 (2)N1—C10—N2—C9−2.2 (3)
C2—C1—C6—S1−179.60 (17)N3'—C10—N2—C9158.1 (6)
C7—C1—C6—S1−0.2 (2)N3—C10—N2—C9−172.3 (4)
C2—C1—C7—N11.2 (3)N1—C10—N2—C14'−173.8 (6)
C6—C1—C7—N1−178.14 (17)N3'—C10—N2—C14'−13.5 (8)
C2—C1—C7—C8178.9 (2)N3—C10—N2—C14'16.1 (7)
C6—C1—C7—C8−0.4 (2)N1—C10—N2—C14164.2 (4)
N1—C7—C8—C9−1.5 (3)N3'—C10—N2—C14−35.5 (7)
C1—C7—C8—C9−179.22 (17)N3—C10—N2—C14−5.9 (6)
N1—C7—C8—S1178.56 (15)O1—C9—N2—C10−179.5 (2)
C1—C7—C8—S10.8 (2)C8—C9—N2—C101.1 (3)
C7—C8—C9—O1−178.78 (19)O1—C9—N2—C14'−7.7 (6)
S1—C8—C9—O11.2 (3)C8—C9—N2—C14'172.9 (5)
C7—C8—C9—N20.5 (3)O1—C9—N2—C1413.3 (4)
S1—C8—C9—N2−179.48 (14)C8—C9—N2—C14−166.1 (4)
N1—C10—N3—C110.8 (8)C15'—C14'—N2—C10−80.9 (8)
N3'—C10—N3—C11−81.1 (18)C15'—C14'—N2—C9107.1 (8)
N2—C10—N3—C11171.4 (5)C15'—C14'—N2—C1421 (2)
C10—N3—C11—C1395.4 (8)C15—C14—N2—C10−82.4 (8)
C10—N3—C11—C12−145.4 (7)C15—C14—N2—C984.8 (8)
N1—C10—N3'—C11'−25.1 (12)C15—C14—N2—C14'−172 (3)
N2—C10—N3'—C11'172.6 (9)C7—C8—S1—C6−0.77 (16)
N3—C10—N3'—C11'86.3 (17)C9—C8—S1—C6179.24 (19)
C10—N3'—C11'—C13'161.8 (14)C5—C6—S1—C8−178.8 (2)
C10—N3'—C11'—C12'−61.6 (18)C1—C6—S1—C80.55 (16)
N2—C14—C15—C16178.0 (7)
D—H···AD—HH···AD···AD—H···A
C14—H14A···O1i0.972.523.478 (9)171
N3—H3A···O1i0.862.463.140 (6)137
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C14—H14A⋯O1i0.972.523.478 (9)171
N3—H3A⋯O1i0.862.463.140 (6)137

Symmetry code: (i) .

  2 in total

1.  Synthesis and preliminary evaluation of some N-[5-(2-furanyl)-2-methyl-4-oxo-4H-thieno[2,3-d]pyrimidin-3-yl]-carboxamide and 3-substituted-5-(2-furanyl)-2-methyl-3H-thieno[2,3-d]pyrimidin-4-ones as antimicrobial agents.

Authors:  Ravindra V Chambhare; Barsu G Khadse; Anil S Bobde; Rajesh H Bahekar
Journal:  Eur J Med Chem       Date:  2003-01       Impact factor: 6.514

2.  Application of bis(iminophosphorane) in heterocyclic synthesis: new entries to symmetrically or unsymmetrically substituted thieno[2,3-d:5,4-d']dipyrimidine-4,5(3H,6H)-diones.

Authors:  Ming-Wu Ding; Sheng-Zhen Xu; Jun-Feng Zhao
Journal:  J Org Chem       Date:  2004-11-26       Impact factor: 4.354

  2 in total

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