Literature DB >> 21200903

6'-Amino-3'-methyl-2-oxo-1'-phenyl-1',3a',4',7a'-tetra-hydrospiro-[1H-indole-3(2H),4'-pyrano[2,3-d]pyrazole]-5'-carbonitrile.

S Etti, G Shanthi, G Shanmugam, P T Perumal.   

Abstract

In the crystal structure of the title compound, C(21)H(15)N(5)O(2), the planar indolone unit and the pyran ring are almost perpendicular to each other [dihedral angle = 89.41 (2)°], and the pyrazole and phenyl rings are oriented at an angle of 25.74 (1)°. The mol-ecular packing is stabilized by inter- and intra-molecular C-H⋯O, N-H⋯O and C-H⋯π hydrogen bonds.

Entities:  

Year:  2007        PMID: 21200903      PMCID: PMC2915382          DOI: 10.1107/S1600536807064926

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Houlihan et al. (1992 ▶); Jeyabharathi et al. (2001 ▶); Kang et al. (2002 ▶); Khafagy et al. (2002 ▶); McSweeney et al. (2004 ▶), Selvanayagam et al. (2005 ▶); Usui et al. (1998 ▶).

Experimental

Crystal data

C21H15N5O2 M = 369.38 Monoclinic, a = 10.0370 (3) Å b = 21.9705 (6) Å c = 8.2325 (2) Å β = 98.761 (1)° V = 1794.23 (8) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 293 (2) K 0.24 × 0.21 × 0.20 mm

Data collection

Bruker Kappa APEXII diffractometer Absorption correction: multi-scan (SAINT; Bruker, 1999 ▶) T min = 0.978, T max = 0.982 21620 measured reflections 4485 independent reflections 3277 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.118 S = 1.02 4485 reflections 254 parameters H-atom parameters constrained Δρmax = 0.24 e Å−3 Δρmin = −0.17 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 1999 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997 ▶); molecular graphics: PLATON (Spek, 2003 ▶); software used to prepare material for publication: SHELXL97 and PARST97 (Nardelli, 1995 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536807064926/lw2047sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536807064926/lw2047Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H15N5O2F000 = 768
Mr = 369.38Dx = 1.367 Mg m3
Monoclinic, P21/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -P2ybcCell parameters from 4485 reflections
a = 10.0370 (3) Åθ = 2.7–28.4º
b = 21.9705 (6) ŵ = 0.09 mm1
c = 8.2325 (2) ÅT = 293 (2) K
β = 98.761 (1)ºCubic, colourless
V = 1794.23 (8) Å30.24 × 0.21 × 0.20 mm
Z = 4
Bruker Kappa APEXII diffractometer4485 independent reflections
Radiation source: fine-focus sealed tube3277 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.028
T = 293(2) Kθmax = 28.4º
ω and φ scansθmin = 2.7º
Absorption correction: multi-scan(SAINT; Bruker, 1999)h = −13→13
Tmin = 0.978, Tmax = 0.982k = −29→29
21620 measured reflectionsl = −10→10
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.041Calculated w = 1/[σ2(Fo2) + (0.0549P)2 + 0.3722P] where P = (Fo2 + 2Fc2)/3 ?
wR(F2) = 0.118(Δ/σ)max < 0.001
S = 1.02Δρmax = 0.24 e Å3
4485 reflectionsΔρmin = −0.17 e Å3
254 parametersExtinction correction: SHELXL97, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0028 (11)
Secondary atom site location: difference Fourier map
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.94447 (12)0.45685 (6)0.30510 (15)0.0484 (3)
H11.02210.47180.34360.058*
N20.63637 (18)0.56417 (7)0.0884 (2)0.0705 (4)
N30.37828 (13)0.49908 (6)0.28737 (17)0.0560 (4)
H3A0.38200.53180.23090.067*
H3B0.30710.49100.32980.067*
N40.53791 (11)0.31470 (5)0.49407 (14)0.0416 (3)
N50.65120 (12)0.27975 (6)0.49024 (16)0.0467 (3)
O10.83478 (10)0.47928 (5)0.52173 (12)0.0524 (3)
O20.45453 (9)0.41161 (4)0.40050 (12)0.0434 (2)
C10.71934 (12)0.42403 (6)0.27907 (15)0.0354 (3)
C20.83874 (13)0.45672 (6)0.38640 (16)0.0400 (3)
C30.91361 (14)0.42960 (6)0.14910 (17)0.0423 (3)
C40.99616 (17)0.42282 (8)0.0305 (2)0.0555 (4)
H41.08520.43600.04770.067*
C50.9396 (2)0.39532 (8)−0.1154 (2)0.0611 (5)
H50.99150.3907−0.19910.073*
C60.80860 (19)0.37474 (7)−0.13958 (19)0.0567 (4)
H60.77380.3561−0.23840.068*
C70.72765 (16)0.38144 (6)−0.01793 (17)0.0459 (3)
H70.63930.3673−0.03390.055*
C80.78159 (14)0.40946 (6)0.12661 (16)0.0375 (3)
C90.60089 (13)0.46759 (6)0.24995 (16)0.0374 (3)
C100.48299 (14)0.46081 (6)0.30913 (16)0.0392 (3)
C110.55303 (12)0.36842 (6)0.41973 (16)0.0366 (3)
C120.73234 (14)0.31320 (6)0.41359 (17)0.0418 (3)
C130.67407 (12)0.37005 (6)0.36648 (15)0.0359 (3)
C140.61894 (15)0.52139 (7)0.16089 (18)0.0445 (3)
C150.42476 (13)0.28945 (7)0.55574 (16)0.0414 (3)
C160.33155 (19)0.32592 (8)0.6121 (2)0.0658 (5)
H160.34170.36800.61310.079*
C170.2218 (2)0.29945 (10)0.6676 (3)0.0811 (6)
H170.15790.32410.70580.097*
C180.20561 (18)0.23795 (9)0.6674 (2)0.0682 (5)
H180.13100.22070.70420.082*
C190.29922 (18)0.20212 (9)0.6129 (2)0.0669 (5)
H190.28930.16000.61380.080*
C200.40913 (17)0.22731 (7)0.5562 (2)0.0580 (4)
H200.47260.20230.51830.070*
C210.86622 (16)0.28962 (8)0.3862 (2)0.0615 (5)
H21A0.87910.24940.43140.092*
H21B0.93590.31600.43910.092*
H21C0.86990.28830.27040.092*
U11U22U33U12U13U23
N10.0335 (6)0.0648 (8)0.0489 (7)−0.0131 (6)0.0126 (5)−0.0126 (6)
N20.0949 (12)0.0515 (8)0.0673 (9)−0.0072 (8)0.0194 (8)0.0063 (7)
N30.0533 (8)0.0583 (8)0.0608 (8)0.0199 (6)0.0225 (6)0.0096 (6)
N40.0356 (6)0.0435 (6)0.0475 (6)−0.0009 (5)0.0122 (5)0.0011 (5)
N50.0378 (6)0.0464 (7)0.0569 (7)0.0024 (5)0.0108 (5)0.0051 (6)
O10.0406 (5)0.0763 (7)0.0418 (5)−0.0155 (5)0.0111 (4)−0.0182 (5)
O20.0358 (5)0.0462 (5)0.0508 (6)0.0044 (4)0.0146 (4)0.0022 (4)
C10.0312 (6)0.0404 (7)0.0349 (6)−0.0042 (5)0.0063 (5)−0.0047 (5)
C20.0334 (7)0.0466 (7)0.0407 (7)−0.0057 (6)0.0082 (5)−0.0040 (6)
C30.0418 (7)0.0423 (7)0.0455 (7)0.0001 (6)0.0150 (6)−0.0029 (6)
C40.0509 (9)0.0594 (9)0.0623 (10)0.0043 (7)0.0280 (8)−0.0017 (8)
C50.0773 (12)0.0601 (10)0.0535 (9)0.0170 (9)0.0338 (9)−0.0017 (8)
C60.0802 (12)0.0495 (9)0.0418 (8)0.0128 (8)0.0140 (8)−0.0073 (6)
C70.0544 (9)0.0417 (7)0.0412 (7)0.0015 (6)0.0064 (6)−0.0050 (6)
C80.0409 (7)0.0358 (6)0.0374 (7)0.0009 (5)0.0109 (5)−0.0007 (5)
C90.0381 (7)0.0375 (7)0.0367 (6)−0.0006 (5)0.0057 (5)−0.0046 (5)
C100.0398 (7)0.0416 (7)0.0363 (7)0.0029 (6)0.0060 (5)−0.0044 (5)
C110.0320 (6)0.0400 (7)0.0382 (7)−0.0002 (5)0.0066 (5)−0.0029 (5)
C120.0342 (7)0.0445 (7)0.0469 (8)0.0000 (6)0.0063 (6)0.0001 (6)
C130.0299 (6)0.0413 (7)0.0364 (6)−0.0033 (5)0.0047 (5)−0.0028 (5)
C140.0482 (8)0.0430 (8)0.0429 (7)−0.0006 (6)0.0086 (6)−0.0049 (6)
C150.0366 (7)0.0502 (8)0.0388 (7)−0.0049 (6)0.0099 (5)−0.0001 (6)
C160.0685 (11)0.0557 (10)0.0830 (13)−0.0057 (8)0.0431 (10)−0.0117 (9)
C170.0702 (12)0.0807 (14)0.1060 (16)0.0021 (10)0.0569 (12)−0.0063 (12)
C180.0531 (10)0.0820 (13)0.0748 (12)−0.0128 (9)0.0268 (9)0.0111 (10)
C190.0603 (11)0.0599 (10)0.0837 (13)−0.0114 (9)0.0218 (9)0.0131 (9)
C200.0517 (9)0.0494 (9)0.0772 (11)0.0013 (7)0.0237 (8)0.0091 (8)
C210.0414 (8)0.0590 (10)0.0872 (13)0.0085 (7)0.0196 (8)0.0120 (9)
N1—C21.3381 (17)C6—C71.390 (2)
N1—C31.4081 (18)C6—H60.9300
N1—H10.8600C7—C81.3754 (19)
N2—C141.141 (2)C7—H70.9300
N3—C101.3366 (18)C9—C101.3548 (18)
N3—H3A0.8600C9—C141.417 (2)
N3—H3B0.8600C11—C131.3534 (17)
N4—C111.3488 (17)C12—C131.4084 (19)
N4—N51.3764 (16)C12—C211.489 (2)
N4—C151.4251 (16)C15—C161.366 (2)
N5—C121.3258 (17)C15—C201.374 (2)
O1—C21.2255 (16)C16—C171.384 (2)
O2—C111.3620 (15)C16—H160.9300
O2—C101.3716 (16)C17—C181.361 (3)
C1—C131.4935 (18)C17—H170.9300
C1—C91.5166 (18)C18—C191.353 (3)
C1—C81.5189 (17)C18—H180.9300
C1—C21.5525 (18)C19—C201.378 (2)
C3—C41.3813 (19)C19—H190.9300
C3—C81.3824 (19)C20—H200.9300
C4—C51.387 (2)C21—H21A0.9600
C4—H40.9300C21—H21B0.9600
C5—C61.376 (3)C21—H21C0.9600
C5—H50.9300
C2—N1—C3111.98 (11)C10—C9—C1125.48 (12)
C2—N1—H1124.0C14—C9—C1116.69 (11)
C3—N1—H1124.0N3—C10—C9126.49 (13)
C10—N3—H3A120.0N3—C10—O2110.13 (12)
C10—N3—H3B120.0C9—C10—O2123.38 (12)
H3A—N3—H3B120.0N4—C11—C13109.79 (11)
C11—N4—N5109.11 (10)N4—C11—O2122.18 (11)
C11—N4—C15130.78 (11)C13—C11—O2127.99 (12)
N5—N4—C15119.80 (11)N5—C12—C13111.30 (12)
C12—N5—N4105.73 (11)N5—C12—C21120.88 (13)
C11—O2—C10113.87 (10)C13—C12—C21127.82 (13)
C13—C1—C9106.77 (10)C11—C13—C12104.06 (11)
C13—C1—C8115.12 (11)C11—C13—C1122.07 (12)
C9—C1—C8114.43 (11)C12—C13—C1133.86 (11)
C13—C1—C2111.00 (11)N2—C14—C9178.35 (17)
C9—C1—C2108.46 (10)C16—C15—C20119.84 (14)
C8—C1—C2100.88 (10)C16—C15—N4121.12 (14)
O1—C2—N1126.29 (13)C20—C15—N4119.03 (13)
O1—C2—C1125.13 (11)C15—C16—C17119.13 (17)
N1—C2—C1108.58 (11)C15—C16—H16120.4
C4—C3—C8122.46 (14)C17—C16—H16120.4
C4—C3—N1128.18 (14)C18—C17—C16121.16 (17)
C8—C3—N1109.36 (11)C18—C17—H17119.4
C3—C4—C5116.65 (16)C16—C17—H17119.4
C3—C4—H4121.7C19—C18—C17119.31 (16)
C5—C4—H4121.7C19—C18—H18120.3
C6—C5—C4121.65 (14)C17—C18—H18120.3
C6—C5—H5119.2C18—C19—C20120.70 (17)
C4—C5—H5119.2C18—C19—H19119.6
C5—C6—C7120.77 (15)C20—C19—H19119.6
C5—C6—H6119.6C15—C20—C19119.85 (16)
C7—C6—H6119.6C15—C20—H20120.1
C8—C7—C6118.32 (15)C19—C20—H20120.1
C8—C7—H7120.8C12—C21—H21A109.5
C6—C7—H7120.8C12—C21—H21B109.5
C7—C8—C3120.14 (12)H21A—C21—H21B109.5
C7—C8—C1130.69 (12)C12—C21—H21C109.5
C3—C8—C1109.17 (11)H21A—C21—H21C109.5
C10—C9—C14117.73 (12)H21B—C21—H21C109.5
C11—N4—N5—C120.01 (15)C11—O2—C10—N3176.12 (11)
C15—N4—N5—C12174.29 (12)C11—O2—C10—C9−3.13 (18)
C3—N1—C2—O1−177.13 (15)N5—N4—C11—C13−0.03 (15)
C3—N1—C2—C11.82 (17)C15—N4—C11—C13−173.48 (13)
C13—C1—C2—O1−60.38 (18)N5—N4—C11—O2177.86 (11)
C9—C1—C2—O156.62 (18)C15—N4—C11—O24.4 (2)
C8—C1—C2—O1177.16 (14)C10—O2—C11—N4−174.36 (12)
C13—C1—C2—N1120.66 (12)C10—O2—C11—C133.11 (19)
C9—C1—C2—N1−122.35 (12)N4—N5—C12—C130.02 (16)
C8—C1—C2—N1−1.81 (15)N4—N5—C12—C21−179.85 (14)
C2—N1—C3—C4178.50 (15)N4—C11—C13—C120.04 (15)
C2—N1—C3—C8−1.03 (18)O2—C11—C13—C12−177.69 (13)
C8—C3—C4—C50.9 (2)N4—C11—C13—C1180.00 (11)
N1—C3—C4—C5−178.53 (15)O2—C11—C13—C12.3 (2)
C3—C4—C5—C6−1.3 (3)N5—C12—C13—C11−0.03 (16)
C4—C5—C6—C70.6 (3)C21—C12—C13—C11179.83 (15)
C5—C6—C7—C80.4 (2)N5—C12—C13—C1−179.99 (13)
C6—C7—C8—C3−0.7 (2)C21—C12—C13—C1−0.1 (3)
C6—C7—C8—C1179.10 (14)C9—C1—C13—C11−6.46 (16)
C4—C3—C8—C70.0 (2)C8—C1—C13—C11−134.66 (13)
N1—C3—C8—C7179.58 (13)C2—C1—C13—C11111.56 (14)
C4—C3—C8—C1−179.81 (14)C9—C1—C13—C12173.49 (14)
N1—C3—C8—C1−0.25 (16)C8—C1—C13—C1245.3 (2)
C13—C1—C8—C761.85 (19)C2—C1—C13—C12−68.48 (18)
C9—C1—C8—C7−62.41 (18)C10—C9—C14—N2−176 (100)
C2—C1—C8—C7−178.61 (14)C1—C9—C14—N28(6)
C13—C1—C8—C3−118.34 (13)C11—N4—C15—C16−29.0 (2)
C9—C1—C8—C3117.40 (13)N5—N4—C15—C16158.13 (15)
C2—C1—C8—C31.21 (14)C11—N4—C15—C20150.19 (16)
C13—C1—C9—C106.56 (17)N5—N4—C15—C20−22.7 (2)
C8—C1—C9—C10135.16 (13)C20—C15—C16—C17−0.5 (3)
C2—C1—C9—C10−113.12 (14)N4—C15—C16—C17178.65 (17)
C13—C1—C9—C14−177.13 (11)C15—C16—C17—C180.2 (3)
C8—C1—C9—C14−48.53 (16)C16—C17—C18—C190.5 (4)
C2—C1—C9—C1463.20 (14)C17—C18—C19—C20−0.8 (3)
C14—C9—C10—N32.5 (2)C16—C15—C20—C190.2 (3)
C1—C9—C10—N3178.78 (13)N4—C15—C20—C19−178.97 (15)
C14—C9—C10—O2−178.36 (12)C18—C19—C20—C150.5 (3)
C1—C9—C10—O2−2.1 (2)
D—H···AD—HH···AD···AD—H···A
C16—H16···O20.932.422.959 (2)117
N1—H1···O1i0.861.992.819 (2)161
N3—H3B···O1ii0.862.122.880 (1)148
C6—H6···Cgiii0.922.853.771 (3)173
Table 1

Hydrogen-bond geometry (Å, °)

Cg is the centroid of the pyrazole ring.

D—H⋯AD—HH⋯ADAD—H⋯A
C16—H16⋯O20.932.422.959 (2)117
N1—H1⋯O1i0.861.992.819 (2)161
N3—H3B⋯O1ii0.862.122.880 (1)148
C6—H6⋯Cgiii0.922.853.771 (3)173

Symmetry codes: (i) ; (ii) ; (iii) .

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