Literature DB >> 21200889

2-(Methoxy-meth-oxy)-1-(4-oxobicyclo-[3.1.0]hexan-1-yl)ethyl 4-nitro-benzoate.

Jing Li, Todd L Lowary, Michael J Ferguson.   

Abstract

In the title compound, C(17)H(19)NO(7), the cyclo-pentane ring is in an envelope conformation in which the methyl-ene group forming the flap is cis to the cyclo-propane group. The relative configuration between the 4-nitro-benzo-yloxy substituent on the side chain and the cyclo-propane ring is trans and the methoxy-lmethyl group adopts the expected conformation in which the two O atoms are gauche to one another.

Entities:  

Year:  2007        PMID: 21200889      PMCID: PMC2915371          DOI: 10.1107/S160053680706686X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of mimetics of biologically important furan­oside rings, see: Callam & Lowary (2000 ▶, 2001 ▶); Callam et al. (2001 ▶); Centrone & Lowary (2002 ▶). For examples of crystal structures of bicyclo­[3.1.0]hexane systems, see; Gurskaya et al. (1990 ▶, 1996 ▶); Gallucci et al. (2000 ▶); Garcia et al. (1992 ▶); Guthrie et al. (1981 ▶); Màrton-Merész et al. (1983 ▶); Biswas et al. (1996 ▶); Bai et al. (2004 ▶). For related literature, see: Hamon & Shirley (1988 ▶); Li & Lowary (2008 ▶); Wolfe (1972 ▶).

Experimental

Crystal data

C17H19NO7 M = 349.33 Triclinic, a = 8.3387 (5) Å b = 10.1389 (6) Å c = 10.4935 (6) Å α = 98.5259 (8)° β = 100.4967 (8)° γ = 101.1562 (7)° V = 840.22 (9) Å3 Z = 2 Mo Kα radiation μ = 0.11 mm−1 T = 193 (2) K 0.52 × 0.50 × 0.47 mm

Data collection

Bruker PLATFORM diffractometer SMART 1000 CCD area-detector Absorption correction: multi-scan (SADABS; Sheldrick, 2003 ▶) T min = 0.946, T max = 0.951 7436 measured reflections 3825 independent reflections 3476 reflections with I > 2σ(I) R int = 0.009

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.120 S = 1.05 3825 reflections 227 parameters H-atom parameters constrained Δρmax = 0.31 e Å−3 Δρmin = −0.17 e Å−3 Data collection: SMART (Bruker, 1997 ▶); cell refinement: SAINT (Bruker, 1997 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 1990 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997a ▶); molecular graphics: SHELXTL (Sheldrick, 1997b ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053680706686X/lh2582sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680706686X/lh2582Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H19NO7Z = 2
Mr = 349.33F000 = 368
Triclinic, P1Dx = 1.381 Mg m3
Hall symbol: -P 1Mo Kα radiation λ = 0.71073 Å
a = 8.3387 (5) ÅCell parameters from 7818 reflections
b = 10.1389 (6) Åθ = 2.6–27.5º
c = 10.4935 (6) ŵ = 0.11 mm1
α = 98.5259 (8)ºT = 193 (2) K
β = 100.4967 (8)ºFragment, colourless
γ = 101.1562 (7)º0.52 × 0.50 × 0.47 mm
V = 840.22 (9) Å3
Bruker PLATFORM diffractometer/SMART 1000 CCD area-detector3825 independent reflections
Radiation source: fine-focus sealed tube3476 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.009
Detector resolution: 8.192 pixels mm-1θmax = 27.5º
T = 193(2) Kθmin = 2.0º
ω scansh = −10→10
Absorption correction: multi-scan(SADABS; Sheldrick, 2003)k = −13→13
Tmin = 0.946, Tmax = 0.951l = −13→13
7436 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.042H-atom parameters constrained
wR(F2) = 0.120  w = 1/[σ2(Fo2) + (0.0703P)2 + 0.1568P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max = 0.013
3825 reflectionsΔρmax = 0.31 e Å3
227 parametersΔρmin = −0.17 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.09546 (12)0.07242 (11)0.73892 (11)0.0553 (3)
O20.27720 (9)0.22849 (8)0.35099 (8)0.03307 (19)
O30.36653 (10)0.48159 (9)0.28812 (8)0.0367 (2)
O40.19060 (11)0.53166 (10)0.10951 (9)0.0469 (2)
O50.54644 (13)0.22855 (12)0.42875 (11)0.0650 (3)
O60.43439 (13)−0.32377 (10)−0.08313 (10)0.0534 (3)
O70.18678 (14)−0.29604 (11)−0.15763 (10)0.0602 (3)
N0.32018 (14)−0.26560 (10)−0.07714 (10)0.0398 (2)
C10.16536 (13)0.31828 (10)0.53155 (10)0.0302 (2)
C2−0.01745 (14)0.24464 (13)0.47296 (12)0.0384 (3)
H2A−0.02670.17880.39080.046*
H2B−0.08640.31120.45270.046*
C3−0.07499 (15)0.16936 (15)0.57953 (14)0.0458 (3)
H3A−0.13920.22200.62980.055*
H3B−0.14660.07750.53890.055*
C40.08438 (15)0.15744 (12)0.66935 (12)0.0391 (3)
C50.22604 (14)0.26104 (11)0.65309 (11)0.0344 (2)
H50.34210.24530.67170.041*
C60.19962 (16)0.40686 (12)0.66433 (11)0.0379 (3)
H6A0.10240.42640.69940.046*
H6B0.30030.48310.68900.046*
C70.28480 (13)0.35255 (10)0.44415 (10)0.0294 (2)
H70.40110.38730.49900.035*
C80.24071 (13)0.45645 (11)0.36257 (11)0.0331 (2)
H8A0.12910.42030.30280.040*
H8B0.23840.54220.42060.040*
C90.34064 (15)0.57459 (13)0.20414 (12)0.0414 (3)
H9A0.34150.66360.25820.050*
H9B0.43480.58920.15860.050*
C100.18474 (19)0.41015 (17)0.01905 (14)0.0547 (4)
H10A0.07770.3849−0.04540.066*
H10B0.19560.33560.06740.066*
H10C0.27690.4264−0.02700.066*
C110.41618 (14)0.18250 (11)0.35071 (11)0.0332 (2)
C120.38783 (13)0.06385 (10)0.23884 (10)0.0297 (2)
C130.52157 (14)0.00427 (11)0.22180 (11)0.0328 (2)
H130.62740.03810.28110.039*
C140.50030 (14)−0.10469 (11)0.11803 (11)0.0328 (2)
H140.5905−0.14610.10510.039*
C150.34449 (14)−0.15100 (10)0.03447 (10)0.0317 (2)
C160.20974 (15)−0.09435 (12)0.04924 (12)0.0385 (3)
H160.1041−0.1290−0.01010.046*
C170.23241 (14)0.01446 (12)0.15285 (12)0.0361 (2)
H170.14160.05530.16510.043*
U11U22U33U12U13U23
O10.0480 (5)0.0566 (6)0.0701 (7)0.0130 (4)0.0196 (5)0.0295 (5)
O20.0283 (4)0.0314 (4)0.0349 (4)0.0070 (3)0.0051 (3)−0.0062 (3)
O30.0310 (4)0.0466 (5)0.0339 (4)0.0100 (3)0.0069 (3)0.0108 (3)
O40.0386 (5)0.0592 (6)0.0436 (5)0.0144 (4)0.0021 (4)0.0154 (4)
O50.0436 (5)0.0701 (7)0.0627 (6)0.0286 (5)−0.0171 (5)−0.0310 (5)
O60.0586 (6)0.0459 (5)0.0544 (6)0.0203 (4)0.0154 (5)−0.0091 (4)
O70.0642 (7)0.0551 (6)0.0463 (5)0.0174 (5)−0.0092 (5)−0.0168 (4)
N0.0500 (6)0.0325 (5)0.0347 (5)0.0094 (4)0.0092 (4)−0.0001 (4)
C10.0295 (5)0.0306 (5)0.0287 (5)0.0084 (4)0.0044 (4)0.0006 (4)
C20.0277 (5)0.0490 (6)0.0357 (6)0.0080 (5)0.0045 (4)0.0033 (5)
C30.0306 (6)0.0577 (8)0.0489 (7)0.0069 (5)0.0108 (5)0.0110 (6)
C40.0372 (6)0.0409 (6)0.0414 (6)0.0102 (5)0.0132 (5)0.0075 (5)
C50.0317 (5)0.0365 (5)0.0335 (5)0.0081 (4)0.0040 (4)0.0052 (4)
C60.0446 (6)0.0356 (6)0.0311 (5)0.0095 (5)0.0081 (5)−0.0018 (4)
C70.0277 (5)0.0277 (5)0.0292 (5)0.0063 (4)0.0042 (4)−0.0033 (4)
C80.0310 (5)0.0350 (5)0.0332 (5)0.0091 (4)0.0075 (4)0.0035 (4)
C90.0384 (6)0.0440 (6)0.0402 (6)0.0055 (5)0.0052 (5)0.0126 (5)
C100.0476 (7)0.0665 (9)0.0422 (7)0.0082 (6)−0.0013 (6)0.0063 (6)
C110.0316 (5)0.0335 (5)0.0326 (5)0.0104 (4)0.0040 (4)0.0004 (4)
C120.0307 (5)0.0282 (5)0.0294 (5)0.0071 (4)0.0065 (4)0.0028 (4)
C130.0304 (5)0.0332 (5)0.0332 (5)0.0096 (4)0.0033 (4)0.0024 (4)
C140.0354 (5)0.0314 (5)0.0345 (5)0.0128 (4)0.0099 (4)0.0057 (4)
C150.0400 (6)0.0260 (5)0.0285 (5)0.0068 (4)0.0089 (4)0.0025 (4)
C160.0314 (5)0.0375 (6)0.0395 (6)0.0054 (4)0.0012 (4)−0.0040 (5)
C170.0292 (5)0.0366 (5)0.0397 (6)0.0095 (4)0.0057 (4)−0.0018 (4)
O1—C41.2155 (16)C5—H51.0000
O2—C111.3306 (13)C6—H6A0.9900
O2—C71.4573 (11)C6—H6B0.9900
O3—C91.4029 (14)C7—C81.5100 (15)
O3—C81.4249 (13)C7—H71.0000
O4—C91.3962 (14)C8—H8A0.9900
O4—C101.4262 (18)C8—H8B0.9900
O5—C111.1978 (14)C9—H9A0.9900
O6—N1.2194 (14)C9—H9B0.9900
O7—N1.2222 (14)C10—H10A0.9800
N—C151.4771 (13)C10—H10B0.9800
C1—C61.4880 (14)C10—H10C0.9800
C1—C71.4991 (15)C11—C121.5005 (14)
C1—C51.5223 (15)C12—C171.3905 (15)
C1—C21.5301 (15)C12—C131.3936 (15)
C2—C31.5395 (18)C13—C141.3909 (15)
C2—H2A0.9900C13—H130.9500
C2—H2B0.9900C14—C151.3799 (15)
C3—C41.5194 (17)C14—H140.9500
C3—H3A0.9900C15—C161.3796 (16)
C3—H3B0.9900C16—C171.3870 (15)
C4—C51.4746 (16)C16—H160.9500
C5—C61.5271 (16)C17—H170.9500
C11—O2—C7118.68 (8)O2—C7—H7109.6
C9—O3—C8113.65 (9)C1—C7—H7109.6
C9—O4—C10112.74 (10)C8—C7—H7109.6
O6—N—O7124.19 (10)O3—C8—C7106.79 (8)
O6—N—C15117.96 (10)O3—C8—H8A110.4
O7—N—C15117.85 (10)C7—C8—H8A110.4
C6—C1—C7117.45 (9)O3—C8—H8B110.4
C6—C1—C560.96 (7)C7—C8—H8B110.4
C7—C1—C5118.28 (9)H8A—C8—H8B108.6
C6—C1—C2116.10 (9)O4—C9—O3113.68 (10)
C7—C1—C2120.97 (9)O4—C9—H9A108.8
C5—C1—C2108.03 (9)O3—C9—H9A108.8
C1—C2—C3105.52 (9)O4—C9—H9B108.8
C1—C2—H2A110.6O3—C9—H9B108.8
C3—C2—H2A110.6H9A—C9—H9B107.7
C1—C2—H2B110.6O4—C10—H10A109.5
C3—C2—H2B110.6O4—C10—H10B109.5
H2A—C2—H2B108.8H10A—C10—H10B109.5
C4—C3—C2105.68 (9)O4—C10—H10C109.5
C4—C3—H3A110.6H10A—C10—H10C109.5
C2—C3—H3A110.6H10B—C10—H10C109.5
C4—C3—H3B110.6O5—C11—O2125.11 (10)
C2—C3—H3B110.6O5—C11—C12124.22 (10)
H3A—C3—H3B108.7O2—C11—C12110.68 (9)
O1—C4—C5125.17 (11)C17—C12—C13120.31 (10)
O1—C4—C3125.78 (11)C17—C12—C11121.15 (9)
C5—C4—C3108.97 (10)C13—C12—C11118.53 (9)
C4—C5—C1107.41 (9)C14—C13—C12120.05 (10)
C4—C5—C6115.41 (10)C14—C13—H13120.0
C1—C5—C658.41 (7)C12—C13—H13120.0
C4—C5—H5119.9C15—C14—C13118.12 (10)
C1—C5—H5119.9C15—C14—H14120.9
C6—C5—H5119.9C13—C14—H14120.9
C1—C6—C560.63 (7)C16—C15—C14123.09 (10)
C1—C6—H6A117.7C16—C15—N118.07 (10)
C5—C6—H6A117.7C14—C15—N118.84 (10)
C1—C6—H6B117.7C15—C16—C17118.32 (10)
C5—C6—H6B117.7C15—C16—H16120.8
H6A—C6—H6B114.8C17—C16—H16120.8
O2—C7—C1108.39 (8)C16—C17—C12120.11 (10)
O2—C7—C8106.47 (8)C16—C17—H17119.9
C1—C7—C8113.09 (8)C12—C17—H17119.9
C6—C1—C2—C3−52.63 (13)C9—O3—C8—C7178.58 (9)
C7—C1—C2—C3154.16 (10)O2—C7—C8—O3−62.70 (10)
C5—C1—C2—C313.23 (12)C1—C7—C8—O3178.37 (8)
C1—C2—C3—C4−20.30 (13)C10—O4—C9—O3−63.98 (14)
C2—C3—C4—O1−156.31 (13)C8—O3—C9—O4−60.59 (13)
C2—C3—C4—C520.54 (14)C7—O2—C11—O56.45 (18)
O1—C4—C5—C1164.54 (12)C7—O2—C11—C12−173.72 (8)
C3—C4—C5—C1−12.34 (13)O5—C11—C12—C17179.13 (13)
O1—C4—C5—C6−132.77 (13)O2—C11—C12—C17−0.71 (15)
C3—C4—C5—C650.36 (13)O5—C11—C12—C13−1.43 (19)
C6—C1—C5—C4109.58 (11)O2—C11—C12—C13178.73 (9)
C7—C1—C5—C4−142.96 (10)C17—C12—C13—C140.32 (17)
C2—C1—C5—C4−0.81 (12)C11—C12—C13—C14−179.12 (10)
C7—C1—C5—C6107.46 (10)C12—C13—C14—C15−0.23 (16)
C2—C1—C5—C6−110.39 (10)C13—C14—C15—C16−0.01 (17)
C7—C1—C6—C5−108.79 (10)C13—C14—C15—N179.31 (10)
C2—C1—C6—C597.02 (11)O6—N—C15—C16−173.37 (11)
C4—C5—C6—C1−95.56 (11)O7—N—C15—C166.64 (16)
C11—O2—C7—C1−120.22 (10)O6—N—C15—C147.28 (16)
C11—O2—C7—C8117.82 (10)O7—N—C15—C14−172.71 (11)
C6—C1—C7—O2155.15 (9)C14—C15—C16—C170.16 (18)
C5—C1—C7—O285.13 (11)N—C15—C16—C17−179.17 (10)
C2—C1—C7—O2−51.99 (12)C15—C16—C17—C12−0.07 (18)
C6—C1—C7—C8−87.05 (11)C13—C12—C17—C16−0.17 (18)
C5—C1—C7—C8−157.06 (9)C11—C12—C17—C16179.26 (11)
C2—C1—C7—C865.82 (12)
  7 in total

1.  Synthesis and antituberculosis activity of C-phosphonate analogues of decaprenolphosphoarabinose, a key intermediate in the biosynthesis of mycobacterial arabinogalactan and lipoarabinomannan.

Authors:  Charla A Centrone; Todd L Lowary
Journal:  J Org Chem       Date:  2002-12-13       Impact factor: 4.354

2.  Structure of 2,5:3,4-dianhydro-D-altritol.

Authors:  J G Garcia; R J Voll; F R Fronczek; E S Younathan
Journal:  Acta Crystallogr C       Date:  1992-09-15       Impact factor: 1.172

3.  SHELXL: high-resolution refinement.

Authors:  G M Sheldrick; T R Schneider
Journal:  Methods Enzymol       Date:  1997       Impact factor: 1.600

4.  Synthesis and conformational investigation of methyl 4a-carba-D-arabinofuranosides.

Authors:  C S Callam; T L Lowary
Journal:  J Org Chem       Date:  2001-12-28       Impact factor: 4.354

5.  X-ray analysis of 2',3'-lyxoanhydrothymidine, a conformationally restricted inhibitor of retroviral reverse transcriptases.

Authors:  G V Gurskaya; A V Bochkarev; A S Zdanov; A V Papchikhin; P P Purygin; A A Krayevsky
Journal:  FEBS Lett       Date:  1990-06-04       Impact factor: 4.124

6.  Sensitivity of (1)J[C(1)-H(1)] magnitudes to anomeric stereochemistry in 2,3-anhydro-O-furanosides.

Authors:  C S Callam; R R Gadikota; T L Lowary
Journal:  J Org Chem       Date:  2001-06-29       Impact factor: 4.354

7.  Total synthesis of both methyl 4a-carba-D-arabinofuranosides.

Authors:  C S Callam; T L Lowary
Journal:  Org Lett       Date:  2000-01-27       Impact factor: 6.005

  7 in total

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