Literature DB >> 21200872

Dimethyl-ammonium bis-(3-oxidonaphthalene-2-carboxyl-ato)borate hemihydrate.

Mustafa Tombul, Kutalmış Güven, Ingrid Svoboda.   

Abstract

The title compound, C(2)H(8)N(+)·C(22)H(12)BO(6) (-)·0.5H(2)O, was synthesized under atmospheric conditions in the presence of dimethyl-formamide acting as a template. The structure is composed of [NH(2)(CH(3))(2)](+) cations, bis-(3-oxidonaphthalene-2-carboxyl-ato)borate anions and water mol-ecules. The water molecule lies on a twofold rotation axis. The stabilization of the crystal structure comes from electrostatic inter-actions and is assisted by inter-molecular O-H⋯O and N-H⋯O hydrogen bonds between the layers.

Entities:  

Year:  2007        PMID: 21200872      PMCID: PMC2915356          DOI: 10.1107/S1600536807066810

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Carr et al. (2005 ▶); Downard et al. (2002 ▶); Errington et al. (1999 ▶); Green et al. (2000 ▶); Grice et al. (1999 ▶); Li & Liu (2006 ▶); Schubert et al. (2000 ▶); Tombul et al. (2003 ▶); Tombul, Guven, Büyükgüngör et al. (2007 ▶); Touboul et al. (2003 ▶); Zhang & Liu (2006 ▶); Zhang et al. (2005 ▶).

Experimental

Crystal data

C2H8NC22H12BO6 −·0.5H2O M = 438.24 Monoclinic, a = 32.011 (3) Å b = 9.774 (1) Å c = 14.742 (1) Å β = 112.628 (7)° V = 4257.2 (7) Å3 Z = 8 Mo Kα radiation μ = 0.10 mm−1 T = 303 (2) K 0.48 × 0.08 × 0.08 mm

Data collection

Oxford Diffraction Xcalibur diffractometer with a Sapphire CCD detector Absorption correction: numerical [using a multifaceted crystal model based on expressions derived (Clark & Reid, 1995 ▶)] T min = 0.981, T max = 0.994 16173 measured reflections 4321 independent reflections 1708 reflections with I > 2σ(I) R int = 0.079

Refinement

R[F 2 > 2σ(F 2)] = 0.093 wR(F 2) = 0.152 S = 1.12 4321 reflections 299 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.21 e Å−3 Δρmin = −0.23 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2006 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2006 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997 ▶); molecular graphics: Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2008 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536807066810/at2517sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536807066810/at2517Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C2H8N+·C22H12BO6·0.5H2OF000 = 1832
Mr = 438.24Dx = 1.367 Mg m3
Monoclinic, C2/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 2075 reflections
a = 32.011 (3) Åθ = 2.5–21.1º
b = 9.774 (1) ŵ = 0.10 mm1
c = 14.742 (1) ÅT = 303 (2) K
β = 112.628 (7)ºRod shape, light yellow
V = 4257.2 (7) Å30.48 × 0.08 × 0.08 mm
Z = 8
Oxford Diffraction Xcalibur diffractometer with a Sapphire CCD detector4321 independent reflections
Radiation source: fine-focus sealed tube1708 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.079
Detector resolution: 8.4012 pixels mm-1θmax = 26.4º
T = 303(2) Kθmin = 2.5º
Rotation method data acquisition using ω and φ scansh = −40→40
Absorption correction: numerical[absorption correction using a multifaceted crystal model based on expressions derived (Clark & Reid, 1995)]k = −9→12
Tmin = 0.981, Tmax = 0.994l = −18→18
16173 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.093H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.152  w = 1/[σ2(Fo2) + (0.0247P)2 + 7.7951P] where P = (Fo2 + 2Fc2)/3
S = 1.12(Δ/σ)max < 0.001
4321 reflectionsΔρmax = 0.21 e Å3
299 parametersΔρmin = −0.23 e Å3
3 restraintsExtinction correction: none
Primary atom site location: structure-invariant direct methods
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O1−0.01987 (8)0.4067 (3)0.37753 (18)0.0487 (8)
O2−0.03911 (9)0.2873 (3)0.5007 (2)0.0520 (8)
O30.01354 (9)0.2159 (3)0.6392 (2)0.0643 (9)
O4−0.09425 (8)0.4084 (3)0.37123 (19)0.0474 (7)
O5−0.06167 (9)0.2000 (3)0.33692 (19)0.0498 (8)
O6−0.10420 (9)0.0190 (3)0.2734 (2)0.0608 (9)
C10.02357 (13)0.3624 (4)0.4222 (3)0.0421 (11)
C20.05411 (13)0.3882 (4)0.3807 (3)0.0443 (11)
H20.04510.43580.32160.053*
C30.09922 (13)0.3435 (4)0.4264 (3)0.0423 (11)
C40.13136 (14)0.3649 (5)0.3838 (3)0.0564 (13)
H40.12300.41260.32490.068*
C50.17420 (16)0.3169 (5)0.4274 (4)0.0693 (15)
H50.19470.33140.39760.083*
C60.18799 (15)0.2461 (5)0.5163 (4)0.0712 (15)
H60.21750.21350.54520.085*
C70.15843 (14)0.2246 (5)0.5608 (3)0.0615 (13)
H70.16790.17840.62050.074*
C80.11340 (13)0.2721 (4)0.5170 (3)0.0443 (11)
C90.08061 (13)0.2483 (4)0.5579 (3)0.0457 (11)
H90.08900.20260.61760.055*
C100.03693 (13)0.2910 (4)0.5115 (3)0.0398 (10)
C110.00351 (14)0.2617 (4)0.5560 (4)0.0482 (12)
C12−0.13259 (13)0.3378 (4)0.3605 (3)0.0406 (10)
C13−0.16686 (12)0.4009 (4)0.3771 (3)0.0462 (11)
H13−0.16380.49230.39620.055*
C14−0.20682 (13)0.3303 (5)0.3661 (3)0.0470 (12)
C15−0.24235 (14)0.3923 (5)0.3855 (3)0.0686 (15)
H15−0.23970.48280.40650.082*
C16−0.28029 (16)0.3202 (6)0.3738 (4)0.0833 (17)
H16−0.30350.36280.38630.100*
C17−0.28545 (16)0.1834 (6)0.3434 (4)0.0858 (17)
H17−0.31170.13560.33620.103*
C18−0.25178 (14)0.1214 (5)0.3245 (3)0.0694 (14)
H18−0.25510.03040.30460.083*
C19−0.21161 (13)0.1922 (5)0.3345 (3)0.0457 (11)
C20−0.17613 (13)0.1312 (4)0.3159 (3)0.0463 (11)
H20−0.17920.04120.29370.056*
C21−0.13709 (12)0.2008 (4)0.3295 (3)0.0379 (10)
C22−0.10027 (14)0.1318 (5)0.3107 (3)0.0466 (11)
B1−0.05381 (15)0.3300 (5)0.3956 (4)0.0444 (13)
N5−0.06832 (10)0.8557 (4)0.1613 (2)0.0518 (9)
H25A−0.03680.82990.16880.062*
H25B−0.06190.90080.22250.062*
C23−0.09329 (15)0.7284 (5)0.1570 (4)0.0791 (16)
H23A−0.07630.67130.21170.095*
H23B−0.09790.68130.09670.095*
H23C−0.12210.74940.15960.095*
C24−0.09181 (16)0.9503 (5)0.0806 (3)0.0898 (18)
H24A−0.09970.90360.01900.108*
H24B−0.07231.02610.08310.108*
H24C−0.11880.98330.08690.108*
O70.00000.0715 (4)0.25000.0849 (15)
H27−0.0156 (12)0.1236 (14)0.271 (3)0.102*
U11U22U33U12U13U23
O10.0322 (16)0.061 (2)0.0533 (19)−0.0011 (15)0.0168 (15)0.0074 (15)
O20.0364 (16)0.071 (2)0.053 (2)−0.0023 (16)0.0217 (15)0.0056 (17)
O30.0504 (18)0.088 (3)0.058 (2)−0.0010 (17)0.0247 (17)0.0188 (19)
O40.0370 (16)0.0427 (19)0.0651 (19)−0.0031 (14)0.0226 (15)−0.0049 (15)
O50.0442 (17)0.047 (2)0.063 (2)0.0006 (15)0.0262 (16)−0.0089 (16)
O60.0632 (19)0.051 (2)0.078 (2)0.0015 (17)0.0375 (17)−0.0150 (18)
C10.037 (3)0.042 (3)0.048 (3)−0.006 (2)0.017 (2)0.000 (2)
C20.040 (3)0.050 (3)0.045 (3)−0.008 (2)0.020 (2)0.000 (2)
C30.038 (3)0.043 (3)0.049 (3)−0.010 (2)0.019 (2)−0.012 (2)
C40.046 (3)0.067 (3)0.067 (3)−0.013 (3)0.033 (3)−0.011 (3)
C50.052 (3)0.084 (4)0.088 (4)−0.009 (3)0.045 (3)−0.012 (3)
C60.040 (3)0.076 (4)0.103 (4)0.001 (3)0.033 (3)0.001 (3)
C70.043 (3)0.060 (3)0.079 (3)0.003 (2)0.020 (3)0.007 (3)
C80.038 (3)0.042 (3)0.049 (3)−0.004 (2)0.012 (2)−0.003 (2)
C90.046 (3)0.045 (3)0.049 (3)−0.003 (2)0.021 (2)0.000 (2)
C100.035 (2)0.040 (3)0.048 (3)−0.005 (2)0.021 (2)0.001 (2)
C110.046 (3)0.047 (3)0.056 (3)−0.004 (2)0.024 (3)−0.002 (3)
C120.038 (2)0.038 (3)0.047 (3)−0.001 (2)0.017 (2)−0.002 (2)
C130.040 (2)0.041 (3)0.060 (3)0.001 (2)0.021 (2)−0.008 (2)
C140.034 (2)0.054 (3)0.056 (3)0.005 (2)0.020 (2)−0.003 (2)
C150.047 (3)0.069 (4)0.100 (4)0.002 (3)0.039 (3)−0.007 (3)
C160.054 (3)0.085 (5)0.123 (5)0.004 (3)0.048 (3)−0.006 (4)
C170.049 (3)0.086 (5)0.133 (5)−0.015 (3)0.046 (3)−0.006 (4)
C180.053 (3)0.070 (4)0.089 (4)−0.011 (3)0.031 (3)−0.004 (3)
C190.035 (2)0.053 (3)0.050 (3)−0.003 (2)0.018 (2)0.001 (2)
C200.048 (3)0.045 (3)0.047 (3)−0.002 (2)0.019 (2)−0.005 (2)
C210.033 (2)0.041 (3)0.040 (3)0.004 (2)0.014 (2)0.001 (2)
C220.049 (3)0.045 (3)0.048 (3)0.001 (3)0.021 (2)−0.002 (2)
B10.027 (3)0.057 (4)0.050 (3)−0.002 (3)0.017 (3)0.001 (3)
N50.048 (2)0.056 (2)0.052 (2)0.006 (2)0.0200 (19)−0.003 (2)
C230.069 (3)0.074 (4)0.097 (4)−0.020 (3)0.035 (3)−0.026 (3)
C240.106 (4)0.096 (5)0.065 (4)0.040 (4)0.029 (3)0.013 (3)
O70.086 (4)0.060 (3)0.135 (4)0.0000.071 (3)0.000
O1—C11.360 (4)C12—C211.405 (5)
O1—B11.427 (5)C13—C141.406 (5)
O2—C111.316 (4)C13—H130.9300
O2—B11.496 (5)C14—C151.412 (5)
O3—C111.227 (4)C14—C191.417 (5)
O4—C121.363 (4)C15—C161.356 (6)
O4—B11.426 (5)C15—H150.9300
O5—C221.324 (4)C16—C171.399 (6)
O5—B11.502 (5)C16—H160.9300
O6—C221.216 (4)C17—C181.355 (6)
C1—C21.362 (5)C17—H170.9300
C1—C101.404 (5)C18—C191.417 (5)
C2—C31.408 (5)C18—H180.9300
C2—H20.9300C19—C201.400 (5)
C3—C41.412 (5)C20—C211.368 (5)
C3—C81.417 (5)C20—H200.9300
C4—C51.355 (6)C21—C221.473 (5)
C4—H40.9300N5—C241.466 (5)
C5—C61.395 (6)N5—C231.467 (5)
C5—H50.9300N5—H25A1.0035
C6—C71.360 (5)N5—H25B0.9530
C6—H60.9300C23—H23A0.9600
C7—C81.412 (5)C23—H23B0.9600
C7—H70.9300C23—H23C0.9600
C8—C91.416 (5)C24—H24A0.9600
C9—C101.364 (5)C24—H24B0.9600
C9—H90.9300C24—H24C0.9600
C10—C111.482 (5)O7—H270.85 (3)
C12—C131.361 (5)
C1—O1—B1116.9 (3)C16—C15—H15119.9
C11—O2—B1122.2 (3)C14—C15—H15119.9
C12—O4—B1116.5 (3)C15—C16—C17121.8 (5)
C22—O5—B1121.6 (3)C15—C16—H16119.1
O1—C1—C2120.0 (4)C17—C16—H16119.1
O1—C1—C10119.9 (4)C18—C17—C16119.2 (5)
C2—C1—C10120.1 (4)C18—C17—H17120.4
C1—C2—C3120.5 (4)C16—C17—H17120.4
C1—C2—H2119.7C17—C18—C19121.4 (5)
C3—C2—H2119.7C17—C18—H18119.3
C2—C3—C4121.9 (4)C19—C18—H18119.3
C2—C3—C8120.2 (4)C20—C19—C18122.9 (4)
C4—C3—C8117.9 (4)C20—C19—C14118.5 (4)
C5—C4—C3121.0 (5)C18—C19—C14118.6 (4)
C5—C4—H4119.5C21—C20—C19121.6 (4)
C3—C4—H4119.5C21—C20—H20119.2
C4—C5—C6120.9 (4)C19—C20—H20119.2
C4—C5—H5119.5C20—C21—C12119.7 (4)
C6—C5—H5119.5C20—C21—C22119.8 (4)
C7—C6—C5120.2 (4)C12—C21—C22120.5 (4)
C7—C6—H6119.9O6—C22—O5120.7 (4)
C5—C6—H6119.9O6—C22—C21123.3 (4)
C6—C7—C8120.4 (5)O5—C22—C21116.0 (4)
C6—C7—H7119.8O4—B1—O1110.7 (4)
C8—C7—H7119.8O4—B1—O2107.7 (3)
C7—C8—C9123.0 (4)O1—B1—O2112.4 (3)
C7—C8—C3119.6 (4)O4—B1—O5112.0 (3)
C9—C8—C3117.4 (4)O1—B1—O5107.9 (3)
C10—C9—C8121.4 (4)O2—B1—O5106.1 (4)
C10—C9—H9119.3C24—N5—C23113.5 (4)
C8—C9—H9119.3C24—N5—H25A115.4
C9—C10—C1120.4 (4)C23—N5—H25A107.4
C9—C10—C11119.6 (4)C24—N5—H25B109.4
C1—C10—C11120.0 (4)C23—N5—H25B110.4
O3—C11—O2119.9 (4)H25A—N5—H25B99.9
O3—C11—C10123.9 (4)N5—C23—H23A109.5
O2—C11—C10116.2 (4)N5—C23—H23B109.5
C13—C12—O4120.1 (4)H23A—C23—H23B109.5
C13—C12—C21120.1 (4)N5—C23—H23C109.5
O4—C12—C21119.7 (4)H23A—C23—H23C109.5
C12—C13—C14121.2 (4)H23B—C23—H23C109.5
C12—C13—H13119.4N5—C24—H24A109.5
C14—C13—H13119.4N5—C24—H24B109.5
C13—C14—C15122.3 (4)H24A—C24—H24B109.5
C13—C14—C19118.9 (4)N5—C24—H24C109.5
C15—C14—C19118.8 (4)H24A—C24—H24C109.5
C16—C15—C14120.2 (5)H24B—C24—H24C109.5
B1—O1—C1—C2152.4 (4)C13—C14—C15—C16180.0 (4)
B1—O1—C1—C10−28.0 (5)C19—C14—C15—C16−0.2 (7)
O1—C1—C2—C3179.7 (4)C14—C15—C16—C170.6 (8)
C10—C1—C2—C30.1 (6)C15—C16—C17—C18−0.4 (9)
C1—C2—C3—C4178.0 (4)C16—C17—C18—C19−0.3 (8)
C1—C2—C3—C8−0.6 (6)C17—C18—C19—C20179.8 (5)
C2—C3—C4—C5−177.7 (4)C17—C18—C19—C140.8 (7)
C8—C3—C4—C51.0 (6)C13—C14—C19—C200.2 (6)
C3—C4—C5—C6−0.7 (7)C15—C14—C19—C20−179.6 (4)
C4—C5—C6—C7−0.2 (8)C13—C14—C19—C18179.3 (4)
C5—C6—C7—C80.8 (7)C15—C14—C19—C18−0.5 (6)
C6—C7—C8—C9177.5 (4)C18—C19—C20—C21−177.6 (4)
C6—C7—C8—C3−0.5 (6)C14—C19—C20—C211.4 (6)
C2—C3—C8—C7178.3 (4)C19—C20—C21—C12−1.7 (6)
C4—C3—C8—C7−0.4 (6)C19—C20—C21—C22178.9 (4)
C2—C3—C8—C90.2 (6)C13—C12—C21—C200.2 (6)
C4—C3—C8—C9−178.5 (4)O4—C12—C21—C20−178.1 (3)
C7—C8—C9—C10−177.3 (4)C13—C12—C21—C22179.6 (4)
C3—C8—C9—C100.7 (6)O4—C12—C21—C221.4 (5)
C8—C9—C10—C1−1.2 (6)B1—O5—C22—O6−171.3 (4)
C8—C9—C10—C11178.9 (4)B1—O5—C22—C218.7 (5)
O1—C1—C10—C9−178.8 (4)C20—C21—C22—O68.0 (6)
C2—C1—C10—C90.8 (6)C12—C21—C22—O6−171.4 (4)
O1—C1—C10—C111.1 (6)C20—C21—C22—O5−172.0 (4)
C2—C1—C10—C11−179.3 (4)C12—C21—C22—O58.5 (5)
B1—O2—C11—O3−173.9 (4)C12—O4—B1—O1163.5 (3)
B1—O2—C11—C106.0 (6)C12—O4—B1—O2−73.2 (4)
C9—C10—C11—O39.7 (6)C12—O4—B1—O543.1 (5)
C1—C10—C11—O3−170.2 (4)C1—O1—B1—O4161.8 (3)
C9—C10—C11—O2−170.2 (4)C1—O1—B1—O241.4 (5)
C1—C10—C11—O29.9 (6)C1—O1—B1—O5−75.3 (4)
B1—O4—C12—C13153.2 (4)C11—O2—B1—O4−153.3 (4)
B1—O4—C12—C21−28.6 (5)C11—O2—B1—O1−31.1 (6)
O4—C12—C13—C14179.7 (4)C11—O2—B1—O586.6 (4)
C21—C12—C13—C141.5 (6)C22—O5—B1—O4−34.1 (5)
C12—C13—C14—C15178.2 (4)C22—O5—B1—O1−156.1 (3)
C12—C13—C14—C19−1.7 (6)C22—O5—B1—O283.2 (4)
D—H···AD—HH···AD···AD—H···A
N5—H25A···O3i1.001.882.849 (4)162
N5—H25B···O6ii0.952.122.839 (4)131
N5—H25B···O3iii0.952.332.871 (4)116
O7—H27···O50.85 (3)2.18 (4)3.010 (3)163.3 (12)
O1—B11.427 (5)
O2—B11.496 (5)
O4—B11.426 (5)
O5—B11.502 (5)
O4—B1—O1110.7 (4)
O4—B1—O2107.7 (3)
O1—B1—O2112.4 (3)
O4—B1—O5112.0 (3)
O1—B1—O5107.9 (3)
O2—B1—O5106.1 (4)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N5—H25A⋯O3i1.001.882.849 (4)162
N5—H25B⋯O6ii0.952.122.839 (4)131
N5—H25B⋯O3iii0.952.332.871 (4)116
O7—H27⋯O50.85 (3)2.18 (4)3.010 (3)163.3 (12)

Symmetry codes: (i) ; (ii) ; (iii) .

  3 in total

1.  Dipotassium maleate with boric acid.

Authors:  Mustafa Tombul; Kutalmis Guven; Orhan Büyükgüngör; Huseyin Aktas; Tahsin Nuri Durlu
Journal:  Acta Crystallogr C       Date:  2007-08-24       Impact factor: 1.172

2.  Guanidinium and imidazolium borates containing the first examples of an isolated nonaborate oxoanion: [B9O12(OH)6]3-.

Authors:  D M Schubert; M Z Visi; C B Knobler
Journal:  Inorg Chem       Date:  2000-05-29       Impact factor: 5.165

3.  An alkoxide cluster with 18 Li+ ions encapsulating two borate anions, [((t)BuO)12Li18(BO3)2].

Authors:  Mustafa Tombul; R John Errington; Robert A Coxall; William Clegg
Journal:  Acta Crystallogr C       Date:  2003-05-31       Impact factor: 1.172

  3 in total

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