Literature DB >> 21200830

Dipropyl 4,8-dioxo-1H,5H-2,6-dioxa-3a,4a,7a,8a-tetra-azacyclo-penta-[def]fluorene-8b,8c-dicarboxyl-ate.

Shuai Wang1, Yan Hu, Meng Gao, Zi-Hua Wang.   

Abstract

The title compound, C(16)H(22)N(4)O(8), is a glycoluril derivative with two propoxycarbonyl substituents on the convex face of the glycoluril system. The dihedral angle between the five-membered rings in the glycoluril unit is 72.70 (2)°. The oxadiazinane six-membered ring displays a normal chair conformation. One of the propyl groups is disordered over two positions with site occupancies of 0.557 (7) and 0.443 (7). Inter-molecular C-H⋯O hydrogen bonds are effective in the stabilization of the crystal structure.

Entities:  

Year:  2007        PMID: 21200830      PMCID: PMC2915321          DOI: 10.1107/S1600536807065853

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Branda et al. (1995 ▶); Elemans et al. (1999 ▶); Gao & Sun (2007 ▶); Isaacs & Witt (2002 ▶); Isaacs et al. (1999 ▶); Li et al. (2007 ▶); Rebek (1999 ▶); Rowan et al. (1999 ▶); She & Xi (2007 ▶); Witt et al. (2000 ▶); Wu et al. (2002 ▶).

Experimental

Crystal data

C16H22N4O8 M = 398.38 Orthorhombic, a = 8.6399 (4) Å b = 13.401 (7) Å c = 16.0445 (8) Å V = 1857.7 (10) Å3 Z = 4 Mo Kα radiation μ = 0.12 mm−1 T = 294 (2) K 0.20 × 0.10 × 0.10 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: none 17272 measured reflections 2315 independent reflections 1967 reflections with I > 2σ(I) R int = 0.041

Refinement

R[F 2 > 2σ(F 2)] = 0.050 wR(F 2) = 0.123 S = 1.07 2315 reflections 263 parameters 4 restraints H-atom parameters constrained Δρmax = 0.26 e Å−3 Δρmin = −0.18 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997 ▶); molecular graphics: PLATON (Spek, 2003 ▶); software used to prepare material for publication: SHELXTL (Bruker, 2001 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536807065853/is2262sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536807065853/is2262Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H22N4O8F000 = 840
Mr = 398.38Dx = 1.424 Mg m3
Orthorhombic, P212121Mo Kα radiation λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 3466 reflections
a = 8.6399 (4) Åθ = 2.5–21.5º
b = 13.401 (7) ŵ = 0.12 mm1
c = 16.0445 (8) ÅT = 294 (2) K
V = 1857.7 (10) Å3Block, colorless
Z = 40.20 × 0.10 × 0.10 mm
Bruker SMART APEX CCD area-detector diffractometer1967 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.041
Monochromator: graphiteθmax = 27.0º
T = 294(2) Kθmin = 2.5º
φ and ω scansh = −11→9
Absorption correction: nonek = −16→17
17272 measured reflectionsl = −19→20
2315 independent reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.050H-atom parameters constrained
wR(F2) = 0.123  w = 1/[σ2(Fo2) + (0.0681P)2 + 0.2494P] where P = (Fo2 + 2Fc2)/3
S = 1.07(Δ/σ)max = 0.002
2315 reflectionsΔρmax = 0.26 e Å3
263 parametersΔρmin = −0.18 e Å3
4 restraintsExtinction correction: none
Primary atom site location: structure-invariant direct methods
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
C10.4167 (4)0.2297 (2)0.2432 (2)0.0501 (8)
H1A0.36800.29060.22390.060*
H1B0.36510.17390.21650.060*
C20.4676 (4)0.1327 (2)0.3595 (2)0.0539 (9)
H2A0.41690.07600.33380.065*
H2B0.45320.12780.41930.065*
C30.6597 (3)0.31946 (18)0.22249 (17)0.0357 (6)
C40.7391 (4)0.1724 (2)0.3941 (2)0.0484 (8)
C50.9211 (4)0.3717 (2)0.2653 (3)0.0605 (10)
H5A1.02360.35990.24270.073*
H5B0.88840.43800.24870.073*
C60.9781 (5)0.2689 (3)0.3785 (3)0.0685 (11)
H6A0.98510.26620.43880.082*
H6B1.08040.25640.35590.082*
C70.6721 (3)0.14966 (18)0.25409 (16)0.0325 (6)
C80.6681 (3)0.05026 (18)0.20526 (17)0.0356 (6)
C90.5560 (5)−0.0444 (2)0.0969 (2)0.0569 (9)
H9A0.5447−0.10000.13520.068*
H9B0.6490−0.05490.06420.068*
C100.4189 (6)−0.0385 (3)0.0411 (3)0.0821 (13)
H10A0.3995−0.10450.01870.098*
H10B0.3299−0.02020.07460.098*
C110.4299 (8)0.0317 (5)−0.0287 (4)0.116 (2)
H11A0.42630.0988−0.00800.174*
H11B0.34480.0209−0.06620.174*
H11C0.52560.0212−0.05780.174*
C120.8373 (3)0.19597 (19)0.26092 (18)0.0350 (6)
C130.9645 (4)0.1474 (2)0.2084 (2)0.0426 (7)
C141.0282 (6)0.1060 (3)0.0683 (3)0.0803 (14)
H14A1.07580.04550.08930.096*0.557 (7)
H14B1.10910.15410.05660.096*0.557 (7)
H14C1.01860.03390.06640.096*0.443 (7)
H14D1.13370.12220.08380.096*0.443 (7)
C150.9389 (12)0.0845 (6)−0.0080 (5)0.094 (3)0.557 (7)
H15A0.86910.02940.00330.113*0.557 (7)
H15B1.01010.0630−0.05110.113*0.557 (7)
C160.844 (2)0.1729 (11)−0.0413 (12)0.130 (5)0.557 (7)
H16A0.75470.1828−0.00650.194*0.557 (7)
H16B0.81090.1589−0.09730.194*0.557 (7)
H16C0.90640.2320−0.04100.194*0.557 (7)
C15'0.9949 (14)0.1470 (8)−0.0134 (5)0.094 (3)0.443 (7)
H15C1.07050.1237−0.05370.113*0.443 (7)
H15D0.99840.2193−0.01170.113*0.443 (7)
C16'0.833 (2)0.1113 (16)−0.0377 (16)0.130 (5)0.443 (7)
H16D0.82190.0418−0.02450.194*0.443 (7)
H16E0.81730.1209−0.09640.194*0.443 (7)
H16F0.75660.1490−0.00740.194*0.443 (7)
N10.5792 (3)0.23013 (15)0.21957 (15)0.0347 (5)
N20.6315 (3)0.13036 (17)0.34032 (15)0.0426 (6)
N30.8136 (3)0.29806 (16)0.23239 (16)0.0390 (6)
N40.8717 (3)0.1929 (2)0.34926 (16)0.0471 (6)
O10.3994 (3)0.22198 (15)0.33015 (16)0.0533 (6)
O20.9261 (3)0.36549 (18)0.35326 (18)0.0682 (7)
O30.6044 (3)0.40152 (14)0.21303 (15)0.0511 (6)
O40.7212 (4)0.1841 (2)0.46809 (15)0.0726 (8)
O50.7493 (3)−0.01743 (15)0.22604 (17)0.0561 (6)
O60.5676 (3)0.05015 (13)0.14370 (13)0.0442 (5)
O71.0852 (3)0.11865 (18)0.23472 (19)0.0643 (7)
O80.9201 (3)0.14622 (19)0.12965 (14)0.0631 (7)
U11U22U33U12U13U23
C10.0357 (17)0.0445 (16)0.070 (2)0.0030 (13)−0.0040 (16)−0.0090 (14)
C20.058 (2)0.0406 (15)0.063 (2)−0.0100 (15)0.0269 (18)−0.0051 (14)
C30.0426 (17)0.0291 (12)0.0355 (14)0.0015 (11)0.0017 (13)0.0004 (10)
C40.066 (2)0.0432 (16)0.0356 (17)0.0154 (15)−0.0011 (16)0.0018 (12)
C50.046 (2)0.0427 (16)0.093 (3)−0.0112 (14)0.003 (2)−0.0124 (17)
C60.054 (2)0.075 (2)0.076 (3)0.0048 (19)−0.026 (2)−0.023 (2)
C70.0319 (15)0.0294 (12)0.0362 (14)0.0018 (10)0.0036 (12)−0.0029 (10)
C80.0348 (15)0.0306 (12)0.0413 (16)0.0015 (11)0.0051 (13)−0.0027 (11)
C90.076 (3)0.0388 (15)0.056 (2)−0.0057 (17)0.0001 (19)−0.0154 (14)
C100.076 (3)0.081 (3)0.089 (3)−0.009 (2)−0.007 (3)−0.036 (2)
C110.133 (5)0.117 (4)0.099 (4)0.021 (4)−0.035 (4)−0.004 (3)
C120.0306 (15)0.0321 (12)0.0421 (15)0.0002 (11)−0.0016 (12)−0.0021 (11)
C130.0306 (16)0.0367 (13)0.060 (2)0.0026 (12)0.0053 (14)−0.0013 (13)
C140.085 (3)0.081 (3)0.075 (3)0.026 (2)0.043 (3)−0.002 (2)
C150.126 (7)0.078 (5)0.079 (5)−0.022 (4)0.064 (5)−0.015 (4)
C160.151 (8)0.170 (15)0.068 (4)0.011 (13)0.023 (5)−0.002 (12)
C15'0.126 (7)0.078 (5)0.079 (5)−0.022 (4)0.064 (5)−0.015 (4)
C16'0.151 (8)0.170 (15)0.068 (4)0.011 (13)0.023 (5)−0.002 (12)
N10.0300 (12)0.0312 (10)0.0429 (13)0.0033 (9)−0.0012 (11)−0.0021 (9)
N20.0523 (16)0.0358 (11)0.0397 (13)−0.0004 (11)0.0086 (12)0.0027 (10)
N30.0336 (13)0.0293 (10)0.0542 (14)−0.0028 (9)0.0012 (11)−0.0011 (10)
N40.0431 (15)0.0521 (14)0.0461 (15)0.0096 (12)−0.0126 (13)−0.0050 (12)
O10.0414 (13)0.0464 (11)0.0721 (16)−0.0010 (10)0.0205 (11)−0.0158 (10)
O20.0538 (16)0.0610 (14)0.0899 (19)−0.0064 (12)−0.0132 (15)−0.0325 (13)
O30.0548 (15)0.0308 (9)0.0676 (14)0.0080 (9)−0.0019 (12)0.0057 (9)
O40.098 (2)0.0832 (17)0.0361 (13)0.0226 (17)−0.0014 (14)0.0007 (12)
O50.0535 (13)0.0359 (10)0.0788 (16)0.0124 (10)−0.0078 (13)−0.0107 (10)
O60.0537 (13)0.0353 (9)0.0435 (11)−0.0003 (9)−0.0031 (11)−0.0082 (8)
O70.0360 (14)0.0604 (14)0.0966 (19)0.0096 (11)−0.0057 (14)−0.0154 (13)
O80.0587 (16)0.0793 (16)0.0515 (14)0.0268 (13)0.0173 (13)−0.0024 (12)
C1—O11.407 (4)C9—H9B0.9700
C1—N11.454 (4)C10—C111.467 (7)
C1—H1A0.9700C10—H10A0.9700
C1—H1B0.9700C10—H10B0.9700
C2—O11.414 (4)C11—H11A0.9600
C2—N21.449 (4)C11—H11B0.9600
C2—H2A0.9700C11—H11C0.9600
C2—H2B0.9700C12—N41.449 (4)
C3—O31.209 (3)C12—N31.457 (3)
C3—N31.369 (4)C12—C131.530 (4)
C3—N11.385 (3)C13—O71.189 (4)
C4—O41.207 (4)C13—O81.321 (4)
C4—N41.381 (5)C14—C15'1.450 (8)
C4—N21.388 (4)C14—O81.460 (4)
C5—O21.414 (5)C14—C151.475 (8)
C5—N31.455 (4)C14—H14A0.9700
C5—H5A0.9700C14—H14B0.9700
C5—H5B0.9700C14—H14C0.9700
C6—O21.429 (5)C14—H14D0.9700
C6—N41.450 (4)C15—C161.538 (9)
C6—H6A0.9700C15—H15A0.9700
C6—H6B0.9700C15—H15B0.9700
C7—N21.451 (4)C16—H16A0.9600
C7—N11.454 (3)C16—H16B0.9600
C7—C81.546 (3)C16—H16C0.9600
C7—C121.561 (4)C15'—C16'1.532 (10)
C8—O51.194 (3)C15'—H15C0.9700
C8—O61.315 (3)C15'—H15D0.9700
C9—O61.477 (3)C16'—H16D0.9600
C9—C101.486 (6)C16'—H16E0.9600
C9—H9A0.9700C16'—H16F0.9600
O1—C1—N1111.2 (3)N3—C12—C13109.1 (2)
O1—C1—H1A109.4N4—C12—C7104.2 (2)
N1—C1—H1A109.4N3—C12—C7102.9 (2)
O1—C1—H1B109.4C13—C12—C7116.7 (2)
N1—C1—H1B109.4O7—C13—O8126.1 (3)
H1A—C1—H1B108.0O7—C13—C12124.9 (3)
O1—C2—N2110.8 (3)O8—C13—C12108.9 (3)
O1—C2—H2A109.5C15'—C14—O8110.1 (5)
N2—C2—H2A109.5O8—C14—C15107.3 (5)
O1—C2—H2B109.5C15'—C14—H14A135.6
N2—C2—H2B109.5O8—C14—H14A110.3
H2A—C2—H2B108.1C15—C14—H14A110.3
O3—C3—N3126.1 (3)C15'—C14—H14B73.5
O3—C3—N1125.7 (3)O8—C14—H14B110.3
N3—C3—N1108.1 (2)C15—C14—H14B110.3
O4—C4—N4126.4 (4)H14A—C14—H14B108.5
O4—C4—N2125.3 (4)C15'—C14—H14C109.4
N4—C4—N2108.2 (3)O8—C14—H14C109.5
O2—C5—N3110.0 (3)C15'—C14—H14D109.4
O2—C5—H5A109.7O8—C14—H14D110.2
N3—C5—H5A109.7H14C—C14—H14D108.1
O2—C5—H5B109.7C14—C15—C16114.7 (9)
N3—C5—H5B109.7C16—C15—H14C148.2
H5A—C5—H5B108.2C14—C15—H15A108.6
O2—C6—N4110.2 (3)C16—C15—H15A108.6
O2—C6—H6A109.6H14C—C15—H15A78.3
N4—C6—H6A109.6C14—C15—H15B108.6
O2—C6—H6B109.6C16—C15—H15B108.6
N4—C6—H6B109.6H14C—C15—H15B98.0
H6A—C6—H6B108.1H15A—C15—H15B107.6
N2—C7—N1111.2 (2)C14—C15'—C16'107.1 (12)
N2—C7—C8108.9 (2)C14—C15'—H15C110.3
N1—C7—C8115.7 (2)C16'—C15'—H15C110.3
N2—C7—C12103.0 (2)C14—C15'—H15D110.3
N1—C7—C12103.7 (2)C16'—C15'—H15D110.3
C8—C7—C12113.5 (2)H15C—C15'—H15D108.6
O5—C8—O6126.6 (2)C15'—C16'—H16D109.5
O5—C8—C7120.0 (3)C15'—C16'—H16E109.5
O6—C8—C7113.3 (2)H16D—C16'—H16E109.5
O6—C9—C10108.3 (3)C15'—C16'—H16F109.5
O6—C9—H9A110.0H16D—C16'—H16F109.5
C10—C9—H9A110.0H16E—C16'—H16F109.5
O6—C9—H9B110.0C3—N1—C1118.7 (2)
C10—C9—H9B110.0C3—N1—C7110.5 (2)
H9A—C9—H9B108.4C1—N1—C7115.5 (2)
C11—C10—C9116.3 (4)C4—N2—C2120.9 (3)
C11—C10—H10A108.2C4—N2—C7111.0 (2)
C9—C10—H10A108.2C2—N2—C7115.8 (3)
C11—C10—H10B108.2C3—N3—C5121.3 (2)
C9—C10—H10B108.2C3—N3—C12111.7 (2)
H10A—C10—H10B107.4C5—N3—C12115.7 (2)
C10—C11—H11A109.5C4—N4—C12110.2 (3)
C10—C11—H11B109.5C4—N4—C6119.8 (3)
H11A—C11—H11B109.5C12—N4—C6115.3 (3)
C10—C11—H11C109.5C1—O1—C2110.4 (2)
H11A—C11—H11C109.5C5—O2—C6110.2 (3)
H11B—C11—H11C109.5C8—O6—C9115.3 (2)
N4—C12—N3111.3 (2)C13—O8—C14117.6 (3)
N4—C12—C13112.3 (2)
N2—C7—C8—O5−59.0 (4)O1—C2—N2—C7−51.7 (3)
N1—C7—C8—O5174.8 (3)N1—C7—N2—C4−101.6 (3)
C12—C7—C8—O555.1 (4)C8—C7—N2—C4129.7 (2)
N2—C7—C8—O6119.5 (3)C12—C7—N2—C48.9 (3)
N1—C7—C8—O6−6.6 (3)N1—C7—N2—C241.1 (3)
C12—C7—C8—O6−126.4 (3)C8—C7—N2—C2−87.6 (3)
O6—C9—C10—C1169.0 (5)C12—C7—N2—C2151.7 (2)
N2—C7—C12—N42.4 (2)O3—C3—N3—C525.0 (5)
N1—C7—C12—N4118.5 (2)N1—C3—N3—C5−158.9 (3)
C8—C7—C12—N4−115.2 (2)O3—C3—N3—C12167.0 (3)
N2—C7—C12—N3−113.8 (2)N1—C3—N3—C12−17.0 (3)
N1—C7—C12—N32.3 (3)O2—C5—N3—C388.6 (3)
C8—C7—C12—N3128.6 (2)O2—C5—N3—C12−52.0 (4)
N2—C7—C12—C13126.8 (2)N4—C12—N3—C3−102.3 (3)
N1—C7—C12—C13−117.1 (2)C13—C12—N3—C3133.3 (3)
C8—C7—C12—C139.2 (3)C7—C12—N3—C38.7 (3)
N4—C12—C13—O7−6.8 (4)N4—C12—N3—C542.0 (4)
N3—C12—C13—O7117.0 (3)C13—C12—N3—C5−82.4 (3)
C7—C12—C13—O7−127.0 (3)C7—C12—N3—C5153.0 (3)
N4—C12—C13—O8175.3 (2)O4—C4—N4—C12−164.3 (3)
N3—C12—C13—O8−60.8 (3)N2—C4—N4—C1219.2 (3)
C7—C12—C13—O855.1 (3)O4—C4—N4—C6−27.0 (5)
C15'—C14—C15—C16−47.2 (12)N2—C4—N4—C6156.5 (3)
O8—C14—C15—C1653.5 (10)N3—C12—N4—C497.1 (3)
O8—C14—C15'—C16'−63.6 (12)C13—C12—N4—C4−140.3 (2)
C15—C14—C15'—C16'29.3 (12)C7—C12—N4—C4−13.1 (3)
O3—C3—N1—C1−28.7 (4)N3—C12—N4—C6−42.3 (4)
N3—C3—N1—C1155.2 (3)C13—C12—N4—C680.3 (3)
O3—C3—N1—C7−165.5 (3)C7—C12—N4—C6−152.5 (3)
N3—C3—N1—C718.4 (3)O2—C6—N4—C4−82.6 (4)
O1—C1—N1—C3−83.7 (3)O2—C6—N4—C1252.7 (4)
O1—C1—N1—C751.1 (3)N1—C1—O1—C2−60.0 (3)
N2—C7—N1—C397.6 (3)N2—C2—O1—C160.1 (4)
C8—C7—N1—C3−137.4 (2)N3—C5—O2—C660.9 (4)
C12—C7—N1—C3−12.4 (3)N4—C6—O2—C5−61.5 (4)
N2—C7—N1—C1−40.6 (3)O5—C8—O6—C90.3 (4)
C8—C7—N1—C184.4 (3)C7—C8—O6—C9−178.1 (3)
C12—C7—N1—C1−150.7 (2)C10—C9—O6—C8169.5 (3)
O4—C4—N2—C225.2 (5)O7—C13—O8—C140.0 (5)
N4—C4—N2—C2−158.2 (3)C12—C13—O8—C14177.8 (3)
O4—C4—N2—C7165.8 (3)C15'—C14—O8—C13−155.8 (6)
N4—C4—N2—C7−17.6 (3)C15—C14—O8—C13163.3 (4)
O1—C2—N2—C487.2 (3)
D—H···AD—HH···AD···AD—H···A
C14—H14A···O2i0.972.583.482 (5)155
C9—H9B···O4ii0.972.583.388 (4)141
C5—H5B···O7iii0.972.453.310 (4)148
C9—H9A···O1iv0.972.503.364 (4)149
C2—H2A···O3iv0.972.463.368 (4)155
C1—H1B···O7v0.972.553.231 (4)128
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C14—H14A⋯O2i0.972.583.482 (5)155
C9—H9B⋯O4ii0.972.583.388 (4)141
C5—H5B⋯O7iii0.972.453.310 (4)148
C9—H9A⋯O1iv0.972.503.364 (4)149
C2—H2A⋯O3iv0.972.463.368 (4)155
C1—H1B⋯O7v0.972.553.231 (4)128

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

  3 in total

1.  Enantiomeric self-recognition of a facial amphiphile triggered by [{Pd(ONO2)(en)}2].

Authors:  Lyle Isaacs; Dariusz Witt
Journal:  Angew Chem Int Ed Engl       Date:  2002-06-03       Impact factor: 15.336

2.  Diastereoselective Formation of Methylene-Bridged Glycoluril Dimers.

Authors: 
Journal:  Org Lett       Date:  2000-03-23       Impact factor: 6.005

3.  Methylene-bridged glycoluril dimers: synthetic methods.

Authors:  Anxin Wu; Arindam Chakraborty; Dariusz Witt; Jason Lagona; Fehmi Damkaci; Marie A Ofori; Jessica K Chiles; James C Fettinger; Lyle Isaacs
Journal:  J Org Chem       Date:  2002-08-09       Impact factor: 4.354

  3 in total

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