Literature DB >> 21200822

4,6-Bis[4-(benzyl-sulfan-yl)styr-yl]-2-(methyl-sulfan-yl)pyrimidine.

Min Wang1, Le-Hua Cheng, Xian-Ping Chu, Shi-You Xu.   

Abstract

The title compound, C(35)H(30)N(2)S(3), has been synthesized by a solvent-free reaction. The mol-ecule exhibits an E,E configuration, the benzene rings and pyrimidine rings being located on the opposite sides of the C=C bonds. The centroid-centroid separation of 3.5808 (17) Å indicates the existence of π-π stacking between nearly parallel pyrimidine and benzene rings of adjacent mol-ecules.

Entities:  

Year:  2007        PMID: 21200822      PMCID: PMC2915314          DOI: 10.1107/S1600536807065063

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For details of the applications of conjugated organic mol­ecules, see: Frederiksen et al. (2001 ▶); Zhao et al. (1995 ▶). For heterocycle-based two-photon absorbing chromophores exhibiting large TPA cross-sections, see: Huang et al. (2003 ▶).

Experimental

Crystal data

C35H30N2S3 M = 574.79 Triclinic, a = 7.199 (1) Å b = 10.1694 (15) Å c = 21.161 (2) Å α = 77.412 (1)° β = 88.425 (3)° γ = 81.129 (2)° V = 1493.8 (3) Å3 Z = 2 Mo Kα radiation μ = 0.28 mm−1 T = 298 (2) K 0.50 × 0.38 × 0.31 mm

Data collection

Bruker SMART CCD area detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.875, T max = 0.920 7820 measured reflections 5185 independent reflections 3229 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.129 S = 1.04 5185 reflections 361 parameters H-atom parameters constrained Δρmax = 0.22 e Å−3 Δρmin = −0.21 e Å−3 Data collection: SMART (Bruker, 1997 ▶); cell refinement: SAINT (Bruker, 1997 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536807065063/xu2372sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536807065063/xu2372Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C35H30N2S3Z = 2
Mr = 574.79F000 = 604
Triclinic, P1Dx = 1.278 Mg m3
Hall symbol: -P 1Mo Kα radiation λ = 0.71073 Å
a = 7.199 (1) ÅCell parameters from 2350 reflections
b = 10.1694 (15) Åθ = 2.5–25.8º
c = 21.161 (2) ŵ = 0.28 mm1
α = 77.412 (1)ºT = 298 (2) K
β = 88.425 (3)ºBlock, red
γ = 81.129 (2)º0.50 × 0.38 × 0.31 mm
V = 1493.8 (3) Å3
Bruker SMART CCD area detector diffractometer5185 independent reflections
Radiation source: fine-focus sealed tube3229 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.026
T = 298(2) Kθmax = 25.0º
φ and ω scansθmin = 2.0º
Absorption correction: multi-scan(SADABS; Sheldrick, 1996)h = −8→8
Tmin = 0.875, Tmax = 0.920k = −12→9
7820 measured reflectionsl = −25→25
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.046H-atom parameters constrained
wR(F2) = 0.129  w = 1/[σ2(Fo2) + (0.0555P)2 + 0.0894P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max < 0.001
5185 reflectionsΔρmax = 0.22 e Å3
361 parametersΔρmin = −0.21 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.57325 (12)0.40771 (8)0.15862 (4)0.0709 (3)
S2−0.76178 (11)1.09386 (8)0.14193 (4)0.0630 (3)
S31.42863 (10)0.70995 (8)0.54464 (4)0.0593 (2)
N10.6566 (3)0.5069 (2)0.25966 (10)0.0453 (5)
N20.3517 (3)0.5797 (2)0.21019 (10)0.0477 (6)
C10.5236 (4)0.5089 (3)0.21646 (12)0.0461 (7)
C20.3081 (4)0.6646 (3)0.25115 (12)0.0437 (6)
C30.4379 (4)0.6735 (3)0.29656 (12)0.0472 (7)
H30.40850.73350.32410.057*
C40.6107 (4)0.5926 (3)0.30053 (12)0.0435 (6)
C50.1233 (4)0.7484 (3)0.24433 (13)0.0525 (7)
H50.09550.81080.27080.063*
C6−0.0066 (4)0.7414 (3)0.20317 (13)0.0487 (7)
H60.02390.67590.17850.058*
C7−0.1931 (4)0.8236 (3)0.19117 (12)0.0449 (7)
C8−0.2598 (4)0.9304 (3)0.22157 (13)0.0553 (8)
H8−0.18560.94870.25290.066*
C9−0.4317 (4)1.0091 (3)0.20649 (13)0.0535 (8)
H9−0.47121.08040.22720.064*
C10−0.5476 (4)0.9832 (3)0.16040 (13)0.0468 (7)
C11−0.4868 (4)0.8747 (3)0.13147 (13)0.0496 (7)
H11−0.56390.85390.10160.060*
C12−0.3126 (4)0.7972 (3)0.14656 (12)0.0487 (7)
H12−0.27400.72520.12630.058*
C13−0.8416 (4)1.0492 (3)0.06998 (14)0.0627 (9)
H13A−0.73931.04480.03930.075*
H13B−0.88200.96040.08130.075*
C14−1.0021 (4)1.1548 (3)0.03979 (13)0.0518 (7)
C15−1.1850 (4)1.1341 (3)0.05280 (14)0.0610 (8)
H15−1.20831.05430.08080.073*
C16−1.3336 (5)1.2288 (4)0.02532 (19)0.0816 (11)
H16−1.45621.21340.03520.098*
C17−1.3021 (7)1.3434 (5)−0.01566 (19)0.0933 (14)
H17−1.40331.4061−0.03510.112*
C18−1.1220 (8)1.3695 (4)−0.02939 (19)0.1124 (15)
H18−1.10111.4499−0.05740.135*
C19−0.9702 (5)1.2737 (4)−0.00067 (17)0.0872 (11)
H19−0.84771.2910−0.00910.105*
C200.7619 (4)0.5923 (3)0.34563 (12)0.0481 (7)
H200.86960.52920.34460.058*
C210.7625 (4)0.6709 (3)0.38730 (12)0.0486 (7)
H210.65160.72900.39110.058*
C220.9207 (4)0.6763 (3)0.42844 (12)0.0442 (6)
C230.8985 (4)0.7586 (3)0.47332 (13)0.0556 (8)
H230.78070.80770.47790.067*
C241.0456 (4)0.7700 (3)0.51137 (13)0.0553 (8)
H241.02540.82460.54160.066*
C251.2236 (4)0.6999 (3)0.50432 (12)0.0437 (6)
C261.2470 (4)0.6161 (3)0.45996 (12)0.0502 (7)
H261.36480.56730.45490.060*
C271.0977 (4)0.6045 (3)0.42341 (13)0.0505 (7)
H271.11650.54680.39450.061*
C281.3614 (4)0.8283 (3)0.59547 (16)0.0743 (10)
H28A1.29570.91330.57030.089*
H28B1.27860.79140.62950.089*
C291.5394 (4)0.8521 (3)0.62436 (14)0.0545 (8)
C301.6381 (5)0.7501 (4)0.66976 (15)0.0777 (10)
H301.59440.66690.68250.093*
C311.8009 (6)0.7694 (4)0.69664 (17)0.0919 (12)
H311.86600.69990.72780.110*
C321.8670 (5)0.8905 (4)0.67762 (17)0.0742 (10)
H321.97620.90380.69620.089*
C331.7747 (5)0.9907 (3)0.63203 (16)0.0704 (9)
H331.82141.07260.61860.085*
C341.6106 (5)0.9720 (3)0.60510 (15)0.0682 (9)
H341.54771.04170.57350.082*
C350.8140 (5)0.3378 (4)0.17513 (18)0.0965 (13)
H35A0.88790.41040.16980.145*
H35B0.85700.28000.14570.145*
H35C0.82680.28550.21880.145*
U11U22U33U12U13U23
S10.0735 (6)0.0698 (6)0.0726 (6)0.0162 (4)−0.0277 (5)−0.0374 (4)
S20.0491 (5)0.0758 (6)0.0681 (5)0.0111 (4)−0.0168 (4)−0.0363 (4)
S30.0447 (4)0.0671 (5)0.0722 (5)−0.0031 (4)−0.0138 (4)−0.0303 (4)
N10.0461 (14)0.0443 (13)0.0459 (13)−0.0042 (11)−0.0087 (11)−0.0113 (10)
N20.0471 (14)0.0467 (13)0.0490 (13)−0.0035 (11)−0.0109 (11)−0.0110 (11)
C10.0542 (18)0.0397 (15)0.0435 (15)−0.0052 (13)−0.0100 (14)−0.0072 (12)
C20.0426 (16)0.0443 (16)0.0426 (15)−0.0047 (13)−0.0023 (13)−0.0070 (13)
C30.0478 (17)0.0544 (17)0.0422 (15)−0.0073 (14)−0.0027 (13)−0.0166 (13)
C40.0466 (17)0.0442 (16)0.0394 (14)−0.0096 (13)−0.0053 (13)−0.0057 (12)
C50.0501 (18)0.0574 (18)0.0514 (17)−0.0041 (14)−0.0055 (14)−0.0166 (14)
C60.0493 (17)0.0429 (16)0.0535 (17)−0.0063 (13)−0.0037 (14)−0.0098 (13)
C70.0419 (16)0.0429 (16)0.0487 (16)−0.0062 (13)−0.0044 (13)−0.0072 (13)
C80.0550 (19)0.0578 (18)0.0567 (18)−0.0080 (15)−0.0181 (15)−0.0182 (15)
C90.0514 (18)0.0501 (17)0.0628 (19)0.0007 (14)−0.0109 (15)−0.0250 (14)
C100.0417 (16)0.0492 (16)0.0503 (16)−0.0036 (13)−0.0047 (13)−0.0141 (13)
C110.0428 (17)0.0546 (17)0.0551 (17)−0.0064 (14)−0.0102 (13)−0.0189 (14)
C120.0518 (18)0.0462 (16)0.0519 (17)−0.0067 (14)−0.0030 (14)−0.0192 (13)
C130.0527 (19)0.074 (2)0.066 (2)0.0063 (16)−0.0156 (15)−0.0344 (17)
C140.0540 (19)0.062 (2)0.0413 (16)0.0007 (15)−0.0049 (14)−0.0207 (15)
C150.054 (2)0.069 (2)0.0616 (19)−0.0117 (17)−0.0106 (16)−0.0160 (16)
C160.056 (2)0.106 (3)0.084 (3)0.006 (2)−0.019 (2)−0.034 (2)
C170.110 (4)0.091 (3)0.066 (3)0.033 (3)−0.032 (3)−0.020 (2)
C180.153 (5)0.090 (3)0.074 (3)−0.005 (3)0.002 (3)0.015 (2)
C190.083 (3)0.102 (3)0.070 (2)−0.015 (2)0.012 (2)−0.006 (2)
C200.0444 (17)0.0530 (17)0.0465 (16)−0.0057 (13)−0.0058 (13)−0.0099 (13)
C210.0403 (16)0.0590 (18)0.0472 (16)−0.0062 (14)−0.0029 (13)−0.0138 (14)
C220.0383 (15)0.0511 (16)0.0454 (16)−0.0102 (13)−0.0017 (12)−0.0122 (13)
C230.0405 (17)0.071 (2)0.0616 (18)−0.0047 (15)−0.0001 (14)−0.0299 (16)
C240.0461 (18)0.071 (2)0.0581 (18)−0.0081 (15)0.0002 (14)−0.0339 (15)
C250.0427 (16)0.0449 (16)0.0439 (15)−0.0073 (13)−0.0057 (12)−0.0094 (13)
C260.0423 (16)0.0544 (17)0.0535 (17)0.0021 (14)−0.0070 (13)−0.0167 (14)
C270.0536 (18)0.0534 (18)0.0495 (16)−0.0038 (14)−0.0067 (14)−0.0238 (14)
C280.055 (2)0.094 (3)0.088 (2)−0.0027 (18)−0.0088 (18)−0.053 (2)
C290.0501 (18)0.068 (2)0.0533 (18)−0.0103 (16)−0.0037 (14)−0.0294 (16)
C300.100 (3)0.076 (2)0.063 (2)−0.042 (2)−0.020 (2)−0.0031 (18)
C310.110 (3)0.091 (3)0.074 (2)−0.029 (3)−0.044 (2)−0.001 (2)
C320.066 (2)0.094 (3)0.075 (2)−0.024 (2)−0.0118 (19)−0.036 (2)
C330.085 (3)0.065 (2)0.074 (2)−0.034 (2)0.005 (2)−0.0270 (19)
C340.085 (3)0.0491 (19)0.073 (2)−0.0029 (18)−0.0146 (19)−0.0211 (16)
C350.080 (3)0.110 (3)0.106 (3)0.032 (2)−0.030 (2)−0.066 (2)
S1—C11.760 (3)C16—H160.9300
S1—C351.782 (3)C17—C181.374 (6)
S2—C101.761 (3)C17—H170.9300
S2—C131.812 (3)C18—C191.401 (5)
S3—C251.753 (3)C18—H180.9300
S3—C281.788 (3)C19—H190.9300
N1—C11.336 (3)C20—C211.314 (3)
N1—C41.357 (3)C20—H200.9300
N2—C11.327 (3)C21—C221.467 (3)
N2—C21.350 (3)C21—H210.9300
C2—C31.385 (3)C22—C271.381 (3)
C2—C51.457 (3)C22—C231.387 (3)
C3—C41.376 (3)C23—C241.381 (3)
C3—H30.9300C23—H230.9300
C4—C201.466 (3)C24—C251.388 (3)
C5—C61.316 (3)C24—H240.9300
C5—H50.9300C25—C261.390 (3)
C6—C71.465 (3)C26—C271.375 (3)
C6—H60.9300C26—H260.9300
C7—C121.389 (3)C27—H270.9300
C7—C81.397 (3)C28—C291.509 (4)
C8—C91.370 (4)C28—H28A0.9700
C8—H80.9300C28—H28B0.9700
C9—C101.394 (3)C29—C301.371 (4)
C9—H90.9300C29—C341.371 (4)
C10—C111.383 (3)C30—C311.376 (4)
C11—C121.380 (3)C30—H300.9300
C11—H110.9300C31—C321.363 (5)
C12—H120.9300C31—H310.9300
C13—C141.502 (4)C32—C331.345 (4)
C13—H13A0.9700C32—H320.9300
C13—H13B0.9700C33—C341.382 (4)
C14—C191.369 (4)C33—H330.9300
C14—C151.376 (4)C34—H340.9300
C15—C161.372 (4)C35—H35A0.9600
C15—H150.9300C35—H35B0.9600
C16—C171.339 (5)C35—H35C0.9600
C1—S1—C35102.24 (14)C17—C18—H18120.3
C10—S2—C13102.92 (12)C19—C18—H18120.3
C25—S3—C28106.17 (13)C14—C19—C18120.0 (4)
C1—N1—C4115.2 (2)C14—C19—H19120.0
C1—N2—C2115.8 (2)C18—C19—H19120.0
N2—C1—N1128.4 (2)C21—C20—C4127.4 (3)
N2—C1—S1112.86 (18)C21—C20—H20116.3
N1—C1—S1118.8 (2)C4—C20—H20116.3
N2—C2—C3120.5 (2)C20—C21—C22126.5 (3)
N2—C2—C5117.6 (2)C20—C21—H21116.7
C3—C2—C5121.8 (2)C22—C21—H21116.7
C4—C3—C2119.3 (2)C27—C22—C23117.0 (2)
C4—C3—H3120.3C27—C22—C21122.5 (2)
C2—C3—H3120.3C23—C22—C21120.5 (2)
N1—C4—C3120.8 (2)C24—C23—C22122.2 (3)
N1—C4—C20114.0 (2)C24—C23—H23118.9
C3—C4—C20125.2 (2)C22—C23—H23118.9
C6—C5—C2124.2 (2)C23—C24—C25119.9 (2)
C6—C5—H5117.9C23—C24—H24120.1
C2—C5—H5117.9C25—C24—H24120.1
C5—C6—C7128.3 (3)C24—C25—C26118.4 (2)
C5—C6—H6115.8C24—C25—S3126.20 (19)
C7—C6—H6115.8C26—C25—S3115.4 (2)
C12—C7—C8116.8 (2)C27—C26—C25120.7 (2)
C12—C7—C6119.4 (2)C27—C26—H26119.7
C8—C7—C6123.9 (2)C25—C26—H26119.7
C9—C8—C7121.9 (2)C26—C27—C22121.8 (2)
C9—C8—H8119.1C26—C27—H27119.1
C7—C8—H8119.1C22—C27—H27119.1
C8—C9—C10120.5 (2)C29—C28—S3107.2 (2)
C8—C9—H9119.8C29—C28—H28A110.3
C10—C9—H9119.8S3—C28—H28A110.3
C11—C10—C9118.5 (2)C29—C28—H28B110.3
C11—C10—S2124.3 (2)S3—C28—H28B110.3
C9—C10—S2117.21 (19)H28A—C28—H28B108.5
C12—C11—C10120.5 (2)C30—C29—C34118.2 (3)
C12—C11—H11119.8C30—C29—C28119.7 (3)
C10—C11—H11119.8C34—C29—C28122.1 (3)
C11—C12—C7121.9 (2)C29—C30—C31120.8 (3)
C11—C12—H12119.0C29—C30—H30119.6
C7—C12—H12119.0C31—C30—H30119.6
C14—C13—S2109.33 (18)C32—C31—C30120.0 (3)
C14—C13—H13A109.8C32—C31—H31120.0
S2—C13—H13A109.8C30—C31—H31120.0
C14—C13—H13B109.8C33—C32—C31120.2 (3)
S2—C13—H13B109.8C33—C32—H32119.9
H13A—C13—H13B108.3C31—C32—H32119.9
C19—C14—C15118.6 (3)C32—C33—C34120.0 (3)
C19—C14—C13120.9 (3)C32—C33—H33120.0
C15—C14—C13120.5 (3)C34—C33—H33120.0
C16—C15—C14121.4 (3)C29—C34—C33120.8 (3)
C16—C15—H15119.3C29—C34—H34119.6
C14—C15—H15119.3C33—C34—H34119.6
C17—C16—C15120.0 (4)S1—C35—H35A109.5
C17—C16—H16120.0S1—C35—H35B109.5
C15—C16—H16120.0H35A—C35—H35B109.5
C16—C17—C18120.8 (4)S1—C35—H35C109.5
C16—C17—H17119.6H35A—C35—H35C109.5
C18—C17—H17119.6H35B—C35—H35C109.5
C17—C18—C19119.3 (4)
C2—N2—C1—N12.8 (4)C13—C14—C15—C16−179.5 (2)
C2—N2—C1—S1−176.85 (19)C14—C15—C16—C170.8 (5)
C4—N1—C1—N2−2.8 (4)C15—C16—C17—C18−1.8 (6)
C4—N1—C1—S1176.89 (19)C16—C17—C18—C190.9 (6)
C35—S1—C1—N2175.6 (2)C15—C14—C19—C18−1.9 (5)
C35—S1—C1—N1−4.1 (3)C13—C14—C19—C18178.6 (3)
C1—N2—C2—C3−0.5 (4)C17—C18—C19—C141.0 (6)
C1—N2—C2—C5177.7 (2)N1—C4—C20—C21175.0 (3)
N2—C2—C3—C4−1.4 (4)C3—C4—C20—C21−3.0 (5)
C5—C2—C3—C4−179.5 (2)C4—C20—C21—C22−174.9 (2)
C1—N1—C4—C30.4 (4)C20—C21—C22—C275.9 (5)
C1—N1—C4—C20−177.7 (2)C20—C21—C22—C23−176.1 (3)
C2—C3—C4—N11.4 (4)C27—C22—C23—C240.4 (4)
C2—C3—C4—C20179.3 (2)C21—C22—C23—C24−177.7 (3)
N2—C2—C5—C63.6 (4)C22—C23—C24—C251.4 (5)
C3—C2—C5—C6−178.2 (3)C23—C24—C25—C26−1.9 (4)
C2—C5—C6—C7−177.8 (3)C23—C24—C25—S3175.9 (2)
C5—C6—C7—C12−178.0 (3)C28—S3—C25—C24−0.3 (3)
C5—C6—C7—C82.8 (5)C28—S3—C25—C26177.6 (2)
C12—C7—C8—C9−2.5 (4)C24—C25—C26—C270.8 (4)
C6—C7—C8—C9176.7 (3)S3—C25—C26—C27−177.3 (2)
C7—C8—C9—C101.0 (5)C25—C26—C27—C220.9 (4)
C8—C9—C10—C111.3 (4)C23—C22—C27—C26−1.5 (4)
C8—C9—C10—S2−177.6 (2)C21—C22—C27—C26176.6 (3)
C13—S2—C10—C11−10.8 (3)C25—S3—C28—C29−173.1 (2)
C13—S2—C10—C9168.1 (2)S3—C28—C29—C30−70.1 (3)
C9—C10—C11—C12−2.1 (4)S3—C28—C29—C34107.6 (3)
S2—C10—C11—C12176.7 (2)C34—C29—C30—C312.0 (5)
C10—C11—C12—C70.5 (4)C28—C29—C30—C31179.8 (3)
C8—C7—C12—C111.7 (4)C29—C30—C31—C32−0.8 (6)
C6—C7—C12—C11−177.5 (2)C30—C31—C32—C33−0.8 (6)
C10—S2—C13—C14−168.0 (2)C31—C32—C33—C341.1 (5)
S2—C13—C14—C1983.3 (3)C30—C29—C34—C33−1.7 (5)
S2—C13—C14—C15−96.2 (3)C28—C29—C34—C33−179.5 (3)
C19—C14—C15—C161.1 (4)C32—C33—C34—C290.2 (5)
  1 in total

1.  Two-photon photosensitized production of singlet oxygen.

Authors:  P K Frederiksen; M Jørgensen; P R Ogilby
Journal:  J Am Chem Soc       Date:  2001-02-14       Impact factor: 15.419

  1 in total

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