Literature DB >> 21200814

7-[4-(5,7-Dimethyl-1,8-naphthyridin-2-yl-oxy)phen-oxy]-2,4-dimethyl-1,8-naphthyridine methanol disolvate.

Shou-Wen Jin, Da-Qi Wang, Yun Chen.   

Abstract

The title compound, C(26)H(22)N(4)O(2)·2CH(3)OH, was synthesized and characterized by (1)H NMR spectroscopy and X-ray structure analysis. There is one half-mol-ecule in the asymmetric unit with a centre of symmetry located at the centre of the n class="Chemical">benzene ring. The two bridged naphthyridine ring systems are in an anti-parallel orientation. In the crystal structure, O-H⋯N, C-H⋯O and C-H⋯N inter-actions define the packing.

Entities:  

Year:  2007        PMID: 21200814      PMCID: PMC2915306          DOI: 10.1107/S160053680706549X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Ferrarini et al. (2004 ▶); Goswami & Mukherjee (1997 ▶); Hoock et al. (1999 ▶); Jin, Liu & Chen (2007 ▶); Jin, Chen & Wang (2007 ▶); Nabanita et al. (2006 ▶); Nakatani et al. (2000 ▶); Nakataniz et al. (2001 ▶); Newkome et al. (1981 ▶); Stuk et al. (2003 ▶); Gavrilova & Bosnich (2004 ▶).

Experimental

Crystal data

C26H22N4O2·2CH4O M = 486.56 Triclinic, a = 7.009 (3) Å b = 9.244 (3) Å c = 10.239 (4) Å α = 78.679 (6)° β = 79.653 (6)° γ = 82.689 (6)° V = 637.0 (4) Å3 Z = 1 Mo Kα radiation μ = 0.09 mm−1 T = 298 (2) K 0.27 × 0.24 × 0.19 mm

Data collection

Bruker SMART APEX CCD Diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.977, T max = 0.984 3379 measured reflections 2216 independent reflections 1236 reflections with I > 2σ(I) R int = 0.019

Refinement

R[F 2 > 2σ(F 2)] = 0.052 wR(F 2) = 0.163 S = 1.03 2216 reflections 163 parameters H-atom parameters constrained Δρmax = 0.27 e Å−3 Δρmin = −0.20 e Å−3 Data collection: SMART (Bruker, 1997 ▶); cell refinement: SMn class="Chemical">ART (Bruker, 1997 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997a ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997a ▶); molecular graphics: SHELXTL (Sheldrick, 1997b ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053680706549X/kp2143sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680706549X/kp2143Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C26H22N4O2·2CH4OZ = 1
Mr = 486.56F000 = 258
Triclinic, P1Dx = 1.268 Mg m3
a = 7.009 (3) ÅMo Kα radiation λ = 0.71073 Å
b = 9.244 (3) ÅCell parameters from 877 reflections
c = 10.239 (4) Åθ = 2.3–24.7º
α = 78.679 (6)ºµ = 0.09 mm1
β = 79.653 (6)ºT = 298 (2) K
γ = 82.689 (6)ºBlock, colourless
V = 637.0 (4) Å30.27 × 0.24 × 0.19 mm
Bruker SMART APEX CCD Diffractometer2216 independent reflections
Radiation source: fine-focus sealed tube1236 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.019
T = 298(2) Kθmax = 25.0º
phi and ω scansθmin = 2.1º
Absorption correction: multi-scan(SADABS; Sheldrick, 1996)h = −8→5
Tmin = 0.977, Tmax = 0.984k = −10→10
3379 measured reflectionsl = −11→12
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.052H-atom parameters constrained
wR(F2) = 0.163  w = 1/[σ2(Fo2) + (0.0658P)2 + 0.2468P] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max < 0.001
2216 reflectionsΔρmax = 0.27 e Å3
163 parametersΔρmin = −0.20 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.3076 (3)0.1993 (2)0.6758 (2)0.0483 (6)
N20.5387 (3)0.2103 (2)0.8040 (2)0.0496 (6)
O10.0813 (3)0.19512 (19)0.5388 (2)0.0619 (6)
O20.3944 (3)0.5192 (2)0.7759 (3)0.0967 (10)
H20.43760.43170.78310.145*
C10.4486 (4)0.1239 (3)0.7453 (3)0.0430 (7)
C20.6819 (4)0.1463 (3)0.8699 (3)0.0529 (8)
C30.7375 (4)−0.0058 (3)0.8838 (3)0.0570 (8)
H30.8371−0.04630.93280.068*
C40.6492 (4)−0.0972 (3)0.8273 (3)0.0521 (8)
C50.4982 (4)−0.0297 (3)0.7537 (3)0.0437 (7)
C60.3930 (4)−0.1050 (3)0.6864 (3)0.0530 (8)
H60.4195−0.20680.69030.064*
C70.2544 (4)−0.0296 (3)0.6165 (3)0.0557 (8)
H70.1844−0.07780.57190.067*
C80.2194 (4)0.1241 (3)0.6135 (3)0.0489 (7)
C90.7853 (5)0.2444 (4)0.9283 (4)0.0748 (10)
H9A0.72840.34480.90900.112*
H9B0.92060.23890.88920.112*
H9C0.77320.21231.02420.112*
C100.7114 (5)−0.2600 (3)0.8422 (4)0.0768 (11)
H10A0.6335−0.30560.79650.115*
H10B0.6944−0.30370.93620.115*
H10C0.8461−0.27510.80350.115*
C110.1900 (4)0.4419 (3)0.4653 (3)0.0532 (8)
H110.31770.40260.44180.064*
C120.0463 (4)0.3504 (3)0.5222 (3)0.0470 (7)
C13−0.1421 (4)0.4064 (3)0.5566 (3)0.0498 (7)
H13−0.23790.34280.59470.060*
C140.1928 (5)0.5291 (4)0.8034 (4)0.0744 (10)
H14A0.15190.49050.89700.112*
H14B0.14520.47270.74880.112*
H14C0.14180.63100.78340.112*
U11U22U33U12U13U23
N10.0538 (15)0.0380 (13)0.0556 (16)−0.0017 (11)−0.0224 (12)−0.0039 (11)
N20.0545 (15)0.0452 (13)0.0511 (15)−0.0090 (11)−0.0184 (12)−0.0019 (11)
O10.0721 (14)0.0400 (11)0.0834 (16)0.0003 (10)−0.0463 (12)−0.0069 (10)
O20.0614 (16)0.0542 (14)0.176 (3)−0.0057 (11)−0.0178 (16)−0.0239 (16)
C10.0442 (16)0.0406 (15)0.0437 (17)−0.0039 (12)−0.0123 (13)−0.0015 (12)
C20.0496 (18)0.0580 (19)0.0515 (19)−0.0095 (15)−0.0141 (15)−0.0026 (14)
C30.0475 (18)0.065 (2)0.056 (2)0.0036 (15)−0.0188 (15)−0.0011 (15)
C40.0492 (18)0.0499 (17)0.0528 (19)0.0061 (14)−0.0097 (15)−0.0040 (14)
C50.0427 (16)0.0400 (15)0.0458 (17)−0.0005 (12)−0.0083 (13)−0.0024 (12)
C60.0608 (19)0.0353 (15)0.063 (2)0.0006 (14)−0.0152 (16)−0.0075 (14)
C70.064 (2)0.0426 (16)0.067 (2)−0.0048 (15)−0.0239 (17)−0.0114 (14)
C80.0507 (17)0.0432 (16)0.0535 (18)−0.0017 (13)−0.0204 (15)−0.0014 (13)
C90.078 (2)0.078 (2)0.079 (3)−0.0178 (19)−0.038 (2)−0.0080 (19)
C100.079 (2)0.058 (2)0.092 (3)0.0232 (18)−0.035 (2)−0.0121 (18)
C110.0488 (18)0.0544 (18)0.055 (2)0.0034 (14)−0.0140 (15)−0.0070 (14)
C120.0560 (19)0.0397 (15)0.0478 (18)−0.0031 (14)−0.0249 (15)0.0005 (13)
C130.0481 (18)0.0493 (17)0.0497 (19)−0.0110 (14)−0.0121 (14)0.0051 (13)
C140.070 (2)0.074 (2)0.084 (3)−0.0051 (18)−0.016 (2)−0.0227 (19)
N1—C81.303 (3)C7—C81.406 (4)
N1—C11.361 (3)C7—H70.9300
N2—C21.322 (3)C9—H9A0.9600
N2—C11.361 (3)C9—H9B0.9600
O1—C81.364 (3)C9—H9C0.9600
O1—C121.406 (3)C10—H10A0.9600
O2—C141.385 (4)C10—H10B0.9600
O2—H20.8200C10—H10C0.9600
C1—C51.407 (4)C11—C121.372 (4)
C2—C31.396 (4)C11—C13i1.383 (4)
C2—C91.498 (4)C11—H110.9300
C3—C41.373 (4)C12—C131.367 (4)
C3—H30.9300C13—C11i1.383 (4)
C4—C51.418 (4)C13—H130.9300
C4—C101.499 (4)C14—H14A0.9600
C5—C61.416 (4)C14—H14B0.9600
C6—C71.350 (4)C14—H14C0.9600
C6—H60.9300
C8—N1—C1117.3 (2)C2—C9—H9A109.5
C2—N2—C1117.9 (2)C2—C9—H9B109.5
C8—O1—C12119.3 (2)H9A—C9—H9B109.5
C14—O2—H2109.5C2—C9—H9C109.5
N2—C1—N1114.1 (2)H9A—C9—H9C109.5
N2—C1—C5123.2 (2)H9B—C9—H9C109.5
N1—C1—C5122.7 (2)C4—C10—H10A109.5
N2—C2—C3122.1 (3)C4—C10—H10B109.5
N2—C2—C9117.1 (3)H10A—C10—H10B109.5
C3—C2—C9120.8 (3)C4—C10—H10C109.5
C4—C3—C2121.9 (3)H10A—C10—H10C109.5
C4—C3—H3119.1H10B—C10—H10C109.5
C2—C3—H3119.1C12—C11—C13i119.0 (3)
C3—C4—C5116.8 (3)C12—C11—H11120.5
C3—C4—C10121.3 (3)C13i—C11—H11120.5
C5—C4—C10122.0 (3)C13—C12—C11121.2 (2)
C1—C5—C6116.9 (2)C13—C12—O1116.5 (2)
C1—C5—C4118.2 (3)C11—C12—O1122.1 (3)
C6—C5—C4124.9 (2)C12—C13—C11i119.8 (3)
C7—C6—C5120.2 (3)C12—C13—H13120.1
C7—C6—H6119.9C11i—C13—H13120.1
C5—C6—H6119.9O2—C14—H14A109.5
C6—C7—C8117.9 (3)O2—C14—H14B109.5
C6—C7—H7121.1H14A—C14—H14B109.5
C8—C7—H7121.1O2—C14—H14C109.5
N1—C8—O1119.7 (2)H14A—C14—H14C109.5
N1—C8—C7124.9 (2)H14B—C14—H14C109.5
O1—C8—C7115.3 (2)
C2—N2—C1—N1−177.8 (2)C10—C4—C5—C6−0.8 (5)
C2—N2—C1—C51.3 (4)C1—C5—C6—C71.0 (4)
C8—N1—C1—N2178.0 (2)C4—C5—C6—C7−178.5 (3)
C8—N1—C1—C5−1.1 (4)C5—C6—C7—C80.0 (5)
C1—N2—C2—C3−2.0 (4)C1—N1—C8—O1−177.9 (2)
C1—N2—C2—C9177.3 (3)C1—N1—C8—C72.2 (4)
N2—C2—C3—C41.5 (5)C12—O1—C8—N14.6 (4)
C9—C2—C3—C4−177.8 (3)C12—O1—C8—C7−175.5 (3)
C2—C3—C4—C50.0 (4)C6—C7—C8—N1−1.7 (5)
C2—C3—C4—C10179.5 (3)C6—C7—C8—O1178.5 (3)
N2—C1—C5—C6−179.4 (3)C13i—C11—C12—C130.3 (5)
N1—C1—C5—C6−0.4 (4)C13i—C11—C12—O1175.5 (2)
N2—C1—C5—C40.1 (4)C8—O1—C12—C13−126.0 (3)
N1—C1—C5—C4179.1 (3)C8—O1—C12—C1158.6 (4)
C3—C4—C5—C1−0.7 (4)C11—C12—C13—C11i−0.3 (5)
C10—C4—C5—C1179.7 (3)O1—C12—C13—C11i−175.7 (2)
C3—C4—C5—C6178.8 (3)
D—H···AD—HH···AD···AD—H···A
O2—H2···N20.822.062.882 (3)178
C6—H6···O2ii0.932.533.414 (4)159
C10—H10A···O2ii0.962.543.436 (4)156
C13—H13···N2iii0.932.613.450 (4)151
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2⋯N20.822.062.882 (3)178
C6—H6⋯O2i0.932.533.414 (4)159
C10—H10A⋯O2i0.962.543.436 (4)156
C13—H13⋯N2ii0.932.613.450 (4)151

Symmetry codes: (i) ; (ii) .

  3 in total

1.  Study on affinity profile toward native human and bovine adenosine receptors of a series of 1,8-naphthyridine derivatives.

Authors:  Pier Luigi Ferrarini; Laura Betti; Tiziana Cavallini; Gino Giannaccini; Antonio Lucacchini; Clementina Manera; Adriano Martinelli; Gabriella Ortore; Giuseppe Saccomanni; Tiziano Tuccinardi
Journal:  J Med Chem       Date:  2004-06-03       Impact factor: 7.446

2.  Principles of mononucleating and binucleating ligand design.

Authors:  Anna L Gavrilova; Brice Bosnich
Journal:  Chem Rev       Date:  2004-02       Impact factor: 60.622

3.  Recognition of guanine-guanine mismatches by the dimeric form of 2-amino-1,8-naphthyridine.

Authors:  K Nakatani; S Sando; H Kumasawa; J Kikuchi; I Saito
Journal:  J Am Chem Soc       Date:  2001-12-19       Impact factor: 15.419

  3 in total

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