Literature DB >> 21200789

2-(1H-Imidazol-1-yl)-3-isopropyl-1-benzothieno[3,2-d]pyrimidin-4(3H)-one.

Sheng-Zhen Xu1.   

Abstract

In the title compound, C(16)H(14)N(4)OS, the three fused rings of the benzothieno[3,2-d]pyrimidinone unit are essentially coplanar, the maximum deviation from the mean plane being 0.067 (3) Å. The dihedral angle between the mean plane of the fused rings and the imidazole ring is 72.00 (3)°. Offset π-π stacking inter-actions involving the fused rings are effective in the stabilization of the crystal structure. The centroid-centroid distances between the thienophene and benzene rings, and between the pyrimidine and benzene rings are 3.67 (1) and 3.93 (1) Å, respectively. There are two intramolecular C-H⋯O interactions.

Entities:  

Year:  2007        PMID: 21200789      PMCID: PMC2915283          DOI: 10.1107/S1600536807064598

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Chambhare et al. (2003 ▶); Ding et al. (2004 ▶). For bond-length data, see: Allen et al. (1987 ▶). For related structures, see: Cao (2007 ▶); Xu et al. (2005 ▶, 2006 ▶).

Experimental

Crystal data

C16H14N4OS M = 310.37 Monoclinic, a = 15.2759 (16) Å b = 12.1387 (12) Å c = 8.0172 (8) Å β = 97.439 (2)° V = 1474.1 (3) Å3 Z = 4 Mo Kα radiation μ = 0.23 mm−1 T = 298 (2) K 0.36 × 0.23 × 0.20 mm

Data collection

Bruker SMART 4K CCD area-detector diffractometer Absorption correction: none 8864 measured reflections 3216 independent reflections 2657 reflections with I > 2σ(I) R int = 0.042

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.132 S = 1.08 3216 reflections 201 parameters H-atom parameters constrained Δρmax = 0.31 e Å−3 Δρmin = −0.24 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997 ▶); molecular graphics: PLATON (Spek, 2003 ▶); software used to prepare material for publication: SHELXTL (Bruker, 2001 ▶) and PLATON. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536807064598/is2265sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536807064598/is2265Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H14N4OSF000 = 648
Mr = 310.37Dx = 1.398 Mg m3
Monoclinic, P21/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3860 reflections
a = 15.2759 (16) Åθ = 2.7–28.0º
b = 12.1387 (12) ŵ = 0.23 mm1
c = 8.0172 (8) ÅT = 298 (2) K
β = 97.439 (2)ºBlock, colorless
V = 1474.1 (3) Å30.36 × 0.23 × 0.20 mm
Z = 4
Bruker SMART 4K CCD area-detector diffractometer2657 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.042
Monochromator: graphiteθmax = 27.0º
T = 298(2) Kθmin = 2.2º
φ and ω scansh = −19→16
Absorption correction: nonek = −14→15
8864 measured reflectionsl = −7→10
3216 independent reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.045H-atom parameters constrained
wR(F2) = 0.132  w = 1/[σ2(Fo2) + (0.0813P)2 + 0.01P] where P = (Fo2 + 2Fc2)/3
S = 1.08(Δ/σ)max = 0.017
3216 reflectionsΔρmax = 0.31 e Å3
201 parametersΔρmin = −0.24 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.01352 (10)0.41878 (12)0.82291 (18)0.0377 (3)
C2−0.04456 (11)0.48730 (14)0.7227 (2)0.0477 (4)
H2−0.02320.54380.66080.057*
C3−0.13345 (12)0.47032 (16)0.7166 (3)0.0591 (5)
H3−0.17280.51580.65040.071*
C4−0.16574 (12)0.38522 (16)0.8090 (3)0.0641 (5)
H4−0.22640.37500.80290.077*
C5−0.10994 (12)0.31650 (15)0.9083 (3)0.0567 (5)
H5−0.13200.26010.96950.068*
C6−0.01944 (11)0.33330 (12)0.9151 (2)0.0435 (4)
C70.10839 (10)0.41943 (11)0.84835 (18)0.0357 (3)
C80.14306 (10)0.33777 (12)0.95497 (19)0.0404 (4)
C90.23580 (11)0.32519 (13)1.0012 (2)0.0455 (4)
C100.24368 (10)0.47907 (11)0.81241 (18)0.0368 (3)
C110.30832 (14)0.65924 (14)0.7549 (3)0.0616 (5)
H110.28320.69830.83650.074*
C120.34470 (12)0.52387 (15)0.5998 (2)0.0520 (4)
H120.35050.45480.55210.062*
C130.37967 (12)0.61901 (15)0.5549 (2)0.0544 (4)
H130.41490.62610.46920.065*
C140.38228 (10)0.41578 (14)0.9892 (2)0.0459 (4)
H140.40430.47660.92590.055*
C150.39582 (13)0.44994 (16)1.1717 (3)0.0630 (5)
H15A0.36720.39801.23700.095*
H15B0.37100.52181.18270.095*
H15C0.45790.45181.21140.095*
C160.43350 (13)0.31491 (17)0.9501 (3)0.0676 (6)
H16A0.41570.25331.01280.101*
H16B0.49550.32810.98050.101*
H16C0.42200.29910.83190.101*
N10.16018 (8)0.48993 (10)0.77008 (16)0.0375 (3)
N20.28561 (8)0.40583 (10)0.92822 (16)0.0402 (3)
N30.29862 (8)0.54942 (10)0.73057 (16)0.0397 (3)
N40.35659 (12)0.70387 (13)0.6517 (2)0.0699 (5)
O10.27164 (10)0.25478 (10)1.09671 (19)0.0662 (4)
S10.06414 (3)0.25652 (3)1.02987 (6)0.05010 (18)
U11U22U33U12U13U23
C10.0434 (8)0.0343 (7)0.0358 (8)−0.0020 (6)0.0073 (6)−0.0069 (6)
C20.0488 (9)0.0438 (8)0.0502 (10)0.0038 (7)0.0054 (7)−0.0002 (7)
C30.0465 (10)0.0589 (11)0.0709 (13)0.0070 (8)0.0035 (9)−0.0047 (9)
C40.0433 (10)0.0640 (11)0.0865 (15)−0.0031 (9)0.0140 (10)−0.0157 (11)
C50.0538 (11)0.0523 (10)0.0672 (12)−0.0111 (8)0.0201 (9)−0.0072 (9)
C60.0501 (9)0.0383 (7)0.0433 (9)−0.0063 (7)0.0112 (7)−0.0071 (7)
C70.0438 (8)0.0309 (7)0.0317 (7)−0.0031 (6)0.0024 (6)−0.0017 (6)
C80.0501 (9)0.0343 (7)0.0359 (8)−0.0054 (6)0.0022 (6)0.0029 (6)
C90.0505 (9)0.0401 (8)0.0435 (9)−0.0035 (7)−0.0021 (7)0.0067 (7)
C100.0447 (8)0.0313 (7)0.0337 (8)−0.0021 (6)0.0025 (6)0.0000 (6)
C110.0814 (14)0.0351 (8)0.0741 (13)−0.0054 (8)0.0322 (11)−0.0024 (8)
C120.0597 (11)0.0528 (10)0.0457 (10)−0.0058 (8)0.0147 (8)−0.0054 (8)
C130.0521 (10)0.0655 (11)0.0472 (10)−0.0090 (9)0.0123 (8)0.0030 (8)
C140.0402 (8)0.0494 (9)0.0459 (9)0.0004 (7)−0.0033 (7)0.0003 (7)
C150.0559 (10)0.0709 (12)0.0573 (12)0.0044 (9)−0.0118 (9)−0.0140 (9)
C160.0576 (11)0.0676 (13)0.0756 (14)0.0157 (9)0.0014 (10)−0.0118 (10)
N10.0406 (7)0.0349 (6)0.0363 (7)−0.0002 (5)0.0029 (5)0.0040 (5)
N20.0423 (7)0.0381 (6)0.0381 (7)−0.0013 (5)−0.0030 (5)0.0029 (5)
N30.0409 (7)0.0369 (6)0.0411 (7)−0.0022 (5)0.0044 (5)0.0016 (5)
N40.0847 (13)0.0507 (9)0.0801 (12)−0.0141 (8)0.0333 (10)0.0046 (8)
O10.0630 (9)0.0585 (8)0.0717 (10)−0.0013 (6)−0.0118 (7)0.0320 (6)
S10.0584 (3)0.0417 (3)0.0497 (3)−0.01108 (17)0.0051 (2)0.01099 (17)
C1—C21.393 (2)C10—N31.4166 (18)
C1—C61.405 (2)C11—N41.296 (2)
C1—C71.437 (2)C11—N31.353 (2)
C2—C31.368 (3)C11—H110.9300
C2—H20.9300C12—C131.341 (2)
C3—C41.397 (3)C12—N31.372 (2)
C3—H30.9300C12—H120.9300
C4—C51.371 (3)C13—N41.363 (2)
C4—H40.9300C13—H130.9300
C5—C61.392 (2)C14—N21.499 (2)
C5—H50.9300C14—C161.508 (2)
C6—S11.7437 (18)C14—C151.509 (3)
C7—C81.370 (2)C14—H140.9800
C7—N11.3713 (18)C15—H15A0.9600
C8—C91.425 (2)C15—H15B0.9600
C8—S11.7247 (15)C15—H15C0.9600
C9—O11.2279 (19)C16—H16A0.9600
C9—N21.4126 (19)C16—H16B0.9600
C10—N11.2835 (19)C16—H16C0.9600
C10—N21.3816 (18)
C2—C1—C6119.98 (14)C13—C12—N3105.79 (15)
C2—C1—C7129.35 (14)C13—C12—H12127.1
C6—C1—C7110.66 (13)N3—C12—H12127.1
C3—C2—C1119.07 (16)C12—C13—N4110.89 (16)
C3—C2—H2120.5C12—C13—H13124.6
C1—C2—H2120.5N4—C13—H13124.6
C2—C3—C4120.61 (18)N2—C14—C16112.49 (14)
C2—C3—H3119.7N2—C14—C15110.11 (14)
C4—C3—H3119.7C16—C14—C15114.53 (15)
C5—C4—C3121.45 (17)N2—C14—H14106.4
C5—C4—H4119.3C16—C14—H14106.4
C3—C4—H4119.3C15—C14—H14106.4
C4—C5—C6118.25 (17)C14—C15—H15A109.5
C4—C5—H5120.9C14—C15—H15B109.5
C6—C5—H5120.9H15A—C15—H15B109.5
C5—C6—C1120.63 (16)C14—C15—H15C109.5
C5—C6—S1126.75 (14)H15A—C15—H15C109.5
C1—C6—S1112.62 (12)H15B—C15—H15C109.5
C8—C7—N1122.53 (14)C14—C16—H16A109.5
C8—C7—C1112.70 (13)C14—C16—H16B109.5
N1—C7—C1124.70 (13)H16A—C16—H16B109.5
C7—C8—C9122.07 (14)C14—C16—H16C109.5
C7—C8—S1113.57 (12)H16A—C16—H16C109.5
C9—C8—S1124.34 (11)H16B—C16—H16C109.5
O1—C9—N2121.34 (15)C10—N1—C7115.30 (12)
O1—C9—C8125.79 (15)C10—N2—C9119.78 (12)
N2—C9—C8112.86 (12)C10—N2—C14121.25 (12)
N1—C10—N2127.02 (13)C9—N2—C14118.78 (12)
N1—C10—N3116.35 (12)C11—N3—C12106.00 (14)
N2—C10—N3116.63 (12)C11—N3—C10125.99 (14)
N4—C11—N3112.37 (17)C12—N3—C10127.67 (13)
N4—C11—H11123.8C11—N4—C13104.96 (15)
N3—C11—H11123.8C8—S1—C690.44 (8)
C6—C1—C2—C30.4 (2)C1—C7—N1—C10178.52 (13)
C7—C1—C2—C3179.29 (16)N1—C10—N2—C96.4 (2)
C1—C2—C3—C4−0.3 (3)N3—C10—N2—C9−173.15 (12)
C2—C3—C4—C50.1 (3)N1—C10—N2—C14−168.50 (14)
C3—C4—C5—C6−0.1 (3)N3—C10—N2—C1411.9 (2)
C4—C5—C6—C10.2 (2)O1—C9—N2—C10175.54 (16)
C4—C5—C6—S1−179.33 (14)C8—C9—N2—C10−5.9 (2)
C2—C1—C6—C5−0.3 (2)O1—C9—N2—C14−9.4 (2)
C7—C1—C6—C5−179.46 (14)C8—C9—N2—C14169.11 (13)
C2—C1—C6—S1179.26 (12)C16—C14—N2—C10−119.77 (17)
C7—C1—C6—S10.14 (15)C15—C14—N2—C10111.16 (16)
C2—C1—C7—C8−179.09 (15)C16—C14—N2—C965.26 (19)
C6—C1—C7—C8−0.07 (17)C15—C14—N2—C9−63.80 (18)
C2—C1—C7—N1−1.9 (2)N4—C11—N3—C12−0.4 (2)
C6—C1—C7—N1177.12 (13)N4—C11—N3—C10−174.04 (16)
N1—C7—C8—C94.5 (2)C13—C12—N3—C110.6 (2)
C1—C7—C8—C9−178.29 (13)C13—C12—N3—C10174.10 (15)
N1—C7—C8—S1−177.29 (11)N1—C10—N3—C1170.9 (2)
C1—C7—C8—S1−0.03 (17)N2—C10—N3—C11−109.48 (18)
C7—C8—C9—O1179.45 (17)N1—C10—N3—C12−101.43 (18)
S1—C8—C9—O11.4 (3)N2—C10—N3—C1278.2 (2)
C7—C8—C9—N21.0 (2)N3—C11—N4—C130.0 (2)
S1—C8—C9—N2−177.07 (11)C12—C13—N4—C110.4 (2)
N3—C12—C13—N4−0.6 (2)C7—C8—S1—C60.09 (12)
N2—C10—N1—C7−0.9 (2)C9—C8—S1—C6178.31 (14)
N3—C10—N1—C7178.70 (12)C5—C6—S1—C8179.44 (16)
C8—C7—N1—C10−4.6 (2)C1—C6—S1—C8−0.14 (12)
D—H···AD—HH···AD···AD—H···A
C16—H16A···O10.962.382.963 (3)119
C15—H15A···O10.962.453.046 (2)120
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C16—H16A⋯O10.962.382.963 (3)119
C15—H15A⋯O10.962.453.046 (2)120
  2 in total

1.  Synthesis and preliminary evaluation of some N-[5-(2-furanyl)-2-methyl-4-oxo-4H-thieno[2,3-d]pyrimidin-3-yl]-carboxamide and 3-substituted-5-(2-furanyl)-2-methyl-3H-thieno[2,3-d]pyrimidin-4-ones as antimicrobial agents.

Authors:  Ravindra V Chambhare; Barsu G Khadse; Anil S Bobde; Rajesh H Bahekar
Journal:  Eur J Med Chem       Date:  2003-01       Impact factor: 6.514

2.  Application of bis(iminophosphorane) in heterocyclic synthesis: new entries to symmetrically or unsymmetrically substituted thieno[2,3-d:5,4-d']dipyrimidine-4,5(3H,6H)-diones.

Authors:  Ming-Wu Ding; Sheng-Zhen Xu; Jun-Feng Zhao
Journal:  J Org Chem       Date:  2004-11-26       Impact factor: 4.354

  2 in total
  1 in total

1.  Ethyl 2-isopropyl-amino-5-methyl-4-oxo-3-phenyl-3,4-dihydro-thieno[2,3-d]pyrimidine-6-carboxyl-ate.

Authors:  Ai-Hua Zheng; Liang-Yong Huang; E Chen; Hong Luo
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-04
  1 in total

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