| Literature DB >> 21200789 |
Abstract
In the title compound, C(16)H(14)N(4)OS, the three fused rings of the benzothieno[3,2-d]pyrimidinone unit are essentially coplanar, the maximum deviation from the mean plane being 0.067 (3) Å. The dihedral angle between the mean plane of the fused rings and the imidazole ring is 72.00 (3)°. Offset π-π stacking inter-actions involving the fused rings are effective in the stabilization of the crystal structure. The centroid-centroid distances between the thienophene and benzene rings, and between the pyrimidine and benzene rings are 3.67 (1) and 3.93 (1) Å, respectively. There are two intramolecular C-H⋯O interactions.Entities:
Year: 2007 PMID: 21200789 PMCID: PMC2915283 DOI: 10.1107/S1600536807064598
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C16H14N4OS | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 3860 reflections |
| θ = 2.7–28.0º | |
| µ = 0.23 mm−1 | |
| β = 97.439 (2)º | Block, colorless |
| 0.36 × 0.23 × 0.20 mm | |
| Bruker SMART 4K CCD area-detector diffractometer | 2657 reflections with |
| Radiation source: fine-focus sealed tube | |
| Monochromator: graphite | θmax = 27.0º |
| θmin = 2.2º | |
| φ and ω scans | |
| Absorption correction: none | |
| 8864 measured reflections | |
| 3216 independent reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| | |
| (Δ/σ)max = 0.017 | |
| 3216 reflections | Δρmax = 0.31 e Å−3 |
| 201 parameters | Δρmin = −0.24 e Å−3 |
| Primary atom site location: structure-invariant direct methods | Extinction correction: none |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 0.01352 (10) | 0.41878 (12) | 0.82291 (18) | 0.0377 (3) | |
| C2 | −0.04456 (11) | 0.48730 (14) | 0.7227 (2) | 0.0477 (4) | |
| H2 | −0.0232 | 0.5438 | 0.6608 | 0.057* | |
| C3 | −0.13345 (12) | 0.47032 (16) | 0.7166 (3) | 0.0591 (5) | |
| H3 | −0.1728 | 0.5158 | 0.6504 | 0.071* | |
| C4 | −0.16574 (12) | 0.38522 (16) | 0.8090 (3) | 0.0641 (5) | |
| H4 | −0.2264 | 0.3750 | 0.8029 | 0.077* | |
| C5 | −0.10994 (12) | 0.31650 (15) | 0.9083 (3) | 0.0567 (5) | |
| H5 | −0.1320 | 0.2601 | 0.9695 | 0.068* | |
| C6 | −0.01944 (11) | 0.33330 (12) | 0.9151 (2) | 0.0435 (4) | |
| C7 | 0.10839 (10) | 0.41943 (11) | 0.84835 (18) | 0.0357 (3) | |
| C8 | 0.14306 (10) | 0.33777 (12) | 0.95497 (19) | 0.0404 (4) | |
| C9 | 0.23580 (11) | 0.32519 (13) | 1.0012 (2) | 0.0455 (4) | |
| C10 | 0.24368 (10) | 0.47907 (11) | 0.81241 (18) | 0.0368 (3) | |
| C11 | 0.30832 (14) | 0.65924 (14) | 0.7549 (3) | 0.0616 (5) | |
| H11 | 0.2832 | 0.6983 | 0.8365 | 0.074* | |
| C12 | 0.34470 (12) | 0.52387 (15) | 0.5998 (2) | 0.0520 (4) | |
| H12 | 0.3505 | 0.4548 | 0.5521 | 0.062* | |
| C13 | 0.37967 (12) | 0.61901 (15) | 0.5549 (2) | 0.0544 (4) | |
| H13 | 0.4149 | 0.6261 | 0.4692 | 0.065* | |
| C14 | 0.38228 (10) | 0.41578 (14) | 0.9892 (2) | 0.0459 (4) | |
| H14 | 0.4043 | 0.4766 | 0.9259 | 0.055* | |
| C15 | 0.39582 (13) | 0.44994 (16) | 1.1717 (3) | 0.0630 (5) | |
| H15A | 0.3672 | 0.3980 | 1.2370 | 0.095* | |
| H15B | 0.3710 | 0.5218 | 1.1827 | 0.095* | |
| H15C | 0.4579 | 0.4518 | 1.2114 | 0.095* | |
| C16 | 0.43350 (13) | 0.31491 (17) | 0.9501 (3) | 0.0676 (6) | |
| H16A | 0.4157 | 0.2533 | 1.0128 | 0.101* | |
| H16B | 0.4955 | 0.3281 | 0.9805 | 0.101* | |
| H16C | 0.4220 | 0.2991 | 0.8319 | 0.101* | |
| N1 | 0.16018 (8) | 0.48993 (10) | 0.77008 (16) | 0.0375 (3) | |
| N2 | 0.28561 (8) | 0.40583 (10) | 0.92822 (16) | 0.0402 (3) | |
| N3 | 0.29862 (8) | 0.54942 (10) | 0.73057 (16) | 0.0397 (3) | |
| N4 | 0.35659 (12) | 0.70387 (13) | 0.6517 (2) | 0.0699 (5) | |
| O1 | 0.27164 (10) | 0.25478 (10) | 1.09671 (19) | 0.0662 (4) | |
| S1 | 0.06414 (3) | 0.25652 (3) | 1.02987 (6) | 0.05010 (18) |
| C1 | 0.0434 (8) | 0.0343 (7) | 0.0358 (8) | −0.0020 (6) | 0.0073 (6) | −0.0069 (6) |
| C2 | 0.0488 (9) | 0.0438 (8) | 0.0502 (10) | 0.0038 (7) | 0.0054 (7) | −0.0002 (7) |
| C3 | 0.0465 (10) | 0.0589 (11) | 0.0709 (13) | 0.0070 (8) | 0.0035 (9) | −0.0047 (9) |
| C4 | 0.0433 (10) | 0.0640 (11) | 0.0865 (15) | −0.0031 (9) | 0.0140 (10) | −0.0157 (11) |
| C5 | 0.0538 (11) | 0.0523 (10) | 0.0672 (12) | −0.0111 (8) | 0.0201 (9) | −0.0072 (9) |
| C6 | 0.0501 (9) | 0.0383 (7) | 0.0433 (9) | −0.0063 (7) | 0.0112 (7) | −0.0071 (7) |
| C7 | 0.0438 (8) | 0.0309 (7) | 0.0317 (7) | −0.0031 (6) | 0.0024 (6) | −0.0017 (6) |
| C8 | 0.0501 (9) | 0.0343 (7) | 0.0359 (8) | −0.0054 (6) | 0.0022 (6) | 0.0029 (6) |
| C9 | 0.0505 (9) | 0.0401 (8) | 0.0435 (9) | −0.0035 (7) | −0.0021 (7) | 0.0067 (7) |
| C10 | 0.0447 (8) | 0.0313 (7) | 0.0337 (8) | −0.0021 (6) | 0.0025 (6) | 0.0000 (6) |
| C11 | 0.0814 (14) | 0.0351 (8) | 0.0741 (13) | −0.0054 (8) | 0.0322 (11) | −0.0024 (8) |
| C12 | 0.0597 (11) | 0.0528 (10) | 0.0457 (10) | −0.0058 (8) | 0.0147 (8) | −0.0054 (8) |
| C13 | 0.0521 (10) | 0.0655 (11) | 0.0472 (10) | −0.0090 (9) | 0.0123 (8) | 0.0030 (8) |
| C14 | 0.0402 (8) | 0.0494 (9) | 0.0459 (9) | 0.0004 (7) | −0.0033 (7) | 0.0003 (7) |
| C15 | 0.0559 (10) | 0.0709 (12) | 0.0573 (12) | 0.0044 (9) | −0.0118 (9) | −0.0140 (9) |
| C16 | 0.0576 (11) | 0.0676 (13) | 0.0756 (14) | 0.0157 (9) | 0.0014 (10) | −0.0118 (10) |
| N1 | 0.0406 (7) | 0.0349 (6) | 0.0363 (7) | −0.0002 (5) | 0.0029 (5) | 0.0040 (5) |
| N2 | 0.0423 (7) | 0.0381 (6) | 0.0381 (7) | −0.0013 (5) | −0.0030 (5) | 0.0029 (5) |
| N3 | 0.0409 (7) | 0.0369 (6) | 0.0411 (7) | −0.0022 (5) | 0.0044 (5) | 0.0016 (5) |
| N4 | 0.0847 (13) | 0.0507 (9) | 0.0801 (12) | −0.0141 (8) | 0.0333 (10) | 0.0046 (8) |
| O1 | 0.0630 (9) | 0.0585 (8) | 0.0717 (10) | −0.0013 (6) | −0.0118 (7) | 0.0320 (6) |
| S1 | 0.0584 (3) | 0.0417 (3) | 0.0497 (3) | −0.01108 (17) | 0.0051 (2) | 0.01099 (17) |
| C1—C2 | 1.393 (2) | C10—N3 | 1.4166 (18) |
| C1—C6 | 1.405 (2) | C11—N4 | 1.296 (2) |
| C1—C7 | 1.437 (2) | C11—N3 | 1.353 (2) |
| C2—C3 | 1.368 (3) | C11—H11 | 0.9300 |
| C2—H2 | 0.9300 | C12—C13 | 1.341 (2) |
| C3—C4 | 1.397 (3) | C12—N3 | 1.372 (2) |
| C3—H3 | 0.9300 | C12—H12 | 0.9300 |
| C4—C5 | 1.371 (3) | C13—N4 | 1.363 (2) |
| C4—H4 | 0.9300 | C13—H13 | 0.9300 |
| C5—C6 | 1.392 (2) | C14—N2 | 1.499 (2) |
| C5—H5 | 0.9300 | C14—C16 | 1.508 (2) |
| C6—S1 | 1.7437 (18) | C14—C15 | 1.509 (3) |
| C7—C8 | 1.370 (2) | C14—H14 | 0.9800 |
| C7—N1 | 1.3713 (18) | C15—H15A | 0.9600 |
| C8—C9 | 1.425 (2) | C15—H15B | 0.9600 |
| C8—S1 | 1.7247 (15) | C15—H15C | 0.9600 |
| C9—O1 | 1.2279 (19) | C16—H16A | 0.9600 |
| C9—N2 | 1.4126 (19) | C16—H16B | 0.9600 |
| C10—N1 | 1.2835 (19) | C16—H16C | 0.9600 |
| C10—N2 | 1.3816 (18) | ||
| C2—C1—C6 | 119.98 (14) | C13—C12—N3 | 105.79 (15) |
| C2—C1—C7 | 129.35 (14) | C13—C12—H12 | 127.1 |
| C6—C1—C7 | 110.66 (13) | N3—C12—H12 | 127.1 |
| C3—C2—C1 | 119.07 (16) | C12—C13—N4 | 110.89 (16) |
| C3—C2—H2 | 120.5 | C12—C13—H13 | 124.6 |
| C1—C2—H2 | 120.5 | N4—C13—H13 | 124.6 |
| C2—C3—C4 | 120.61 (18) | N2—C14—C16 | 112.49 (14) |
| C2—C3—H3 | 119.7 | N2—C14—C15 | 110.11 (14) |
| C4—C3—H3 | 119.7 | C16—C14—C15 | 114.53 (15) |
| C5—C4—C3 | 121.45 (17) | N2—C14—H14 | 106.4 |
| C5—C4—H4 | 119.3 | C16—C14—H14 | 106.4 |
| C3—C4—H4 | 119.3 | C15—C14—H14 | 106.4 |
| C4—C5—C6 | 118.25 (17) | C14—C15—H15A | 109.5 |
| C4—C5—H5 | 120.9 | C14—C15—H15B | 109.5 |
| C6—C5—H5 | 120.9 | H15A—C15—H15B | 109.5 |
| C5—C6—C1 | 120.63 (16) | C14—C15—H15C | 109.5 |
| C5—C6—S1 | 126.75 (14) | H15A—C15—H15C | 109.5 |
| C1—C6—S1 | 112.62 (12) | H15B—C15—H15C | 109.5 |
| C8—C7—N1 | 122.53 (14) | C14—C16—H16A | 109.5 |
| C8—C7—C1 | 112.70 (13) | C14—C16—H16B | 109.5 |
| N1—C7—C1 | 124.70 (13) | H16A—C16—H16B | 109.5 |
| C7—C8—C9 | 122.07 (14) | C14—C16—H16C | 109.5 |
| C7—C8—S1 | 113.57 (12) | H16A—C16—H16C | 109.5 |
| C9—C8—S1 | 124.34 (11) | H16B—C16—H16C | 109.5 |
| O1—C9—N2 | 121.34 (15) | C10—N1—C7 | 115.30 (12) |
| O1—C9—C8 | 125.79 (15) | C10—N2—C9 | 119.78 (12) |
| N2—C9—C8 | 112.86 (12) | C10—N2—C14 | 121.25 (12) |
| N1—C10—N2 | 127.02 (13) | C9—N2—C14 | 118.78 (12) |
| N1—C10—N3 | 116.35 (12) | C11—N3—C12 | 106.00 (14) |
| N2—C10—N3 | 116.63 (12) | C11—N3—C10 | 125.99 (14) |
| N4—C11—N3 | 112.37 (17) | C12—N3—C10 | 127.67 (13) |
| N4—C11—H11 | 123.8 | C11—N4—C13 | 104.96 (15) |
| N3—C11—H11 | 123.8 | C8—S1—C6 | 90.44 (8) |
| C6—C1—C2—C3 | 0.4 (2) | C1—C7—N1—C10 | 178.52 (13) |
| C7—C1—C2—C3 | 179.29 (16) | N1—C10—N2—C9 | 6.4 (2) |
| C1—C2—C3—C4 | −0.3 (3) | N3—C10—N2—C9 | −173.15 (12) |
| C2—C3—C4—C5 | 0.1 (3) | N1—C10—N2—C14 | −168.50 (14) |
| C3—C4—C5—C6 | −0.1 (3) | N3—C10—N2—C14 | 11.9 (2) |
| C4—C5—C6—C1 | 0.2 (2) | O1—C9—N2—C10 | 175.54 (16) |
| C4—C5—C6—S1 | −179.33 (14) | C8—C9—N2—C10 | −5.9 (2) |
| C2—C1—C6—C5 | −0.3 (2) | O1—C9—N2—C14 | −9.4 (2) |
| C7—C1—C6—C5 | −179.46 (14) | C8—C9—N2—C14 | 169.11 (13) |
| C2—C1—C6—S1 | 179.26 (12) | C16—C14—N2—C10 | −119.77 (17) |
| C7—C1—C6—S1 | 0.14 (15) | C15—C14—N2—C10 | 111.16 (16) |
| C2—C1—C7—C8 | −179.09 (15) | C16—C14—N2—C9 | 65.26 (19) |
| C6—C1—C7—C8 | −0.07 (17) | C15—C14—N2—C9 | −63.80 (18) |
| C2—C1—C7—N1 | −1.9 (2) | N4—C11—N3—C12 | −0.4 (2) |
| C6—C1—C7—N1 | 177.12 (13) | N4—C11—N3—C10 | −174.04 (16) |
| N1—C7—C8—C9 | 4.5 (2) | C13—C12—N3—C11 | 0.6 (2) |
| C1—C7—C8—C9 | −178.29 (13) | C13—C12—N3—C10 | 174.10 (15) |
| N1—C7—C8—S1 | −177.29 (11) | N1—C10—N3—C11 | 70.9 (2) |
| C1—C7—C8—S1 | −0.03 (17) | N2—C10—N3—C11 | −109.48 (18) |
| C7—C8—C9—O1 | 179.45 (17) | N1—C10—N3—C12 | −101.43 (18) |
| S1—C8—C9—O1 | 1.4 (3) | N2—C10—N3—C12 | 78.2 (2) |
| C7—C8—C9—N2 | 1.0 (2) | N3—C11—N4—C13 | 0.0 (2) |
| S1—C8—C9—N2 | −177.07 (11) | C12—C13—N4—C11 | 0.4 (2) |
| N3—C12—C13—N4 | −0.6 (2) | C7—C8—S1—C6 | 0.09 (12) |
| N2—C10—N1—C7 | −0.9 (2) | C9—C8—S1—C6 | 178.31 (14) |
| N3—C10—N1—C7 | 178.70 (12) | C5—C6—S1—C8 | 179.44 (16) |
| C8—C7—N1—C10 | −4.6 (2) | C1—C6—S1—C8 | −0.14 (12) |
| H··· | ||||
| C16—H16A···O1 | 0.96 | 2.38 | 2.963 (3) | 119 |
| C15—H15A···O1 | 0.96 | 2.45 | 3.046 (2) | 120 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| C16—H16 | 0.96 | 2.38 | 2.963 (3) | 119 |
| C15—H15 | 0.96 | 2.45 | 3.046 (2) | 120 |