Literature DB >> 21200755

5,10,15,20-Tetra-kis(3,5-difluoro-phen-yl)porphyrin.

P Bhyrappa, V Velkannan, B Varghese.   

Abstract

The crystal structure of the title compound, C(44)H(22)F(8)N(4), shows an unusual non-planar geometry of the porphyrin ring although the mol-ecule is free of steric crowding around the periphery of the macrocycle. The mol-ecular packing exhibits weak inter-molecular hydrogen bonding (C-H⋯F) and C-H⋯π inter-actions. The molecular symmetry is .

Entities:  

Year:  2007        PMID: 21200755      PMCID: PMC2915253          DOI: 10.1107/S1600536807062782

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the stereochemistry of porphyrins and metalloporphyrins, see: Senge (2000 ▶); Scheidt & Lee (1987 ▶). For a related structure, see: Silvers & Tulinsky (1967 ▶). For the preparation of the title compound, see: Tamiaki et al. (2000 ▶). For C—H⋯π and C—H⋯F inter­actions, see: Steiner (2002 ▶); Thalladi et al. (1998 ▶).

Experimental

Crystal data

C44H22F8N4 M = 758.66 Tetragonal, a = 15.426 (5) Å c = 13.991 (5) Å V = 3329.3 (19) Å3 Z = 4 Mo Kα radiation μ = 0.12 mm−1 T = 233 (2) K 0.30 × 0.20 × 0.20 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 1999 ▶) T min = 0.965, T max = 0.986 20353 measured reflections 1145 independent reflections 1049 reflections with I > 2σ(I) R int = 0.041

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.098 S = 1.07 1145 reflections 127 parameters H-atom parameters constrained Δρmax = 0.20 e Å−3 Δρmin = −0.15 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT-Plus (Bruker, 2004 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997 ▶); molecular graphics: ORTEP-32 (Farrugia, 1997 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536807062782/si2056sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536807062782/si2056Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C44H22F8N4Dx = 1.514 Mg m3
Mr = 758.66Mo Kα radiation, λ = 0.71073 Å
Tetragonal, I42dCell parameters from 5676 reflections
Hall symbol: I -4 2bwθ = 2.7–27.4°
a = 15.426 (5) ŵ = 0.12 mm1
c = 13.991 (5) ÅT = 233 K
V = 3329.3 (19) Å3Plate, purple
Z = 40.30 × 0.20 × 0.20 mm
F(000) = 1544
Bruker APEXII CCD area-detector diffractometer1145 independent reflections
Radiation source: fine-focus sealed tube1049 reflections with I > 2σ(I)
graphiteRint = 0.041
ω and φ scanθmax = 28.4°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Bruker, 1999)h = −20→20
Tmin = 0.965, Tmax = 0.986k = −19→18
20353 measured reflectionsl = −18→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.036Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.098H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0579P)2 + 1.6388P] where P = (Fo2 + 2Fc2)/3
1145 reflections(Δ/σ)max < 0.001
127 parametersΔρmax = 0.20 e Å3
0 restraintsΔρmin = −0.15 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
C10.62343 (12)−0.15392 (12)0.26244 (14)0.0234 (4)
C20.71372 (13)−0.17616 (13)0.25131 (18)0.0289 (4)
H20.7375−0.23140.25610.035*
C30.75734 (13)−0.10209 (12)0.23267 (16)0.0285 (4)
H30.8164−0.09700.22050.034*
C40.69521 (12)−0.03261 (13)0.23514 (15)0.0233 (4)
C50.71381 (12)0.05575 (12)0.22542 (14)0.0225 (4)
C60.80391 (13)0.08176 (12)0.19734 (15)0.0240 (4)
C70.87363 (13)0.07798 (15)0.25940 (16)0.0310 (5)
H70.86650.05830.32170.037*
C80.95385 (14)0.10405 (16)0.22687 (18)0.0353 (5)
C90.96818 (14)0.13294 (16)0.1348 (2)0.0385 (6)
H91.02300.14960.11410.046*
C100.89782 (17)0.13583 (16)0.07556 (17)0.0380 (5)
C110.81595 (13)0.11143 (15)0.10383 (16)0.0299 (5)
H110.76950.11460.06160.036*
N10.61430 (10)−0.06642 (10)0.25215 (12)0.0230 (4)
H10.5666−0.03770.25570.028*0.50
F11.02219 (8)0.10061 (13)0.28671 (12)0.0550 (5)
F20.90872 (12)0.16429 (14)−0.01500 (13)0.0632 (5)
U11U22U33U12U13U23
C10.0216 (9)0.0199 (8)0.0288 (10)0.0015 (7)−0.0003 (8)0.0020 (7)
C20.0221 (9)0.0225 (9)0.0420 (11)0.0048 (7)0.0006 (9)0.0041 (9)
C30.0190 (9)0.0260 (9)0.0404 (11)0.0033 (7)0.0033 (8)0.0040 (9)
C40.0180 (8)0.0239 (9)0.0280 (9)0.0000 (7)0.0029 (8)0.0009 (7)
C50.0193 (8)0.0209 (9)0.0273 (9)0.0001 (7)0.0017 (7)0.0001 (7)
C60.0211 (9)0.0183 (8)0.0325 (9)0.0001 (7)0.0040 (8)−0.0020 (8)
C70.0237 (10)0.0389 (11)0.0302 (10)−0.0006 (8)0.0031 (8)−0.0023 (9)
C80.0207 (9)0.0393 (12)0.0458 (12)−0.0035 (9)−0.0008 (9)−0.0085 (11)
C90.0239 (10)0.0382 (12)0.0533 (14)−0.0089 (9)0.0134 (10)−0.0070 (11)
C100.0377 (12)0.0366 (12)0.0396 (12)−0.0041 (10)0.0124 (10)0.0048 (10)
C110.0252 (9)0.0305 (10)0.0340 (10)−0.0003 (9)0.0014 (8)0.0046 (9)
N10.0169 (7)0.0201 (8)0.0319 (9)−0.0001 (6)0.0009 (7)0.0015 (6)
F10.0214 (7)0.0862 (13)0.0575 (9)−0.0066 (7)−0.0062 (6)−0.0118 (10)
F20.0548 (10)0.0853 (13)0.0495 (9)−0.0146 (9)0.0159 (8)0.0246 (9)
C1—N11.365 (2)C6—C111.398 (3)
C1—C5i1.404 (3)C7—C81.378 (3)
C1—C21.443 (3)C7—H70.9300
C2—C31.351 (3)C8—F11.347 (3)
C2—H20.9300C8—C91.381 (4)
C3—C41.438 (3)C9—C101.366 (4)
C3—H30.9300C9—H90.9300
C4—N11.373 (3)C10—F21.351 (3)
C4—C51.400 (3)C10—C111.376 (3)
C5—C1ii1.404 (3)C11—H110.9300
C5—C61.499 (3)N1—H10.8600
C6—C71.383 (3)
N1—C1—C5i125.93 (17)C8—C7—C6118.6 (2)
N1—C1—C2108.87 (16)C8—C7—H7120.7
C5i—C1—C2125.04 (17)C6—C7—H7120.7
C3—C2—C1107.48 (17)F1—C8—C7119.1 (2)
C3—C2—H2126.3F1—C8—C9117.9 (2)
C1—C2—H2126.3C7—C8—C9123.1 (2)
C2—C3—C4107.07 (17)C10—C9—C8116.69 (19)
C2—C3—H3126.5C10—C9—H9121.7
C4—C3—H3126.5C8—C9—H9121.7
N1—C4—C5124.97 (17)F2—C10—C9118.7 (2)
N1—C4—C3109.07 (16)F2—C10—C11118.2 (2)
C5—C4—C3125.93 (18)C9—C10—C11123.1 (2)
C4—C5—C1ii125.26 (18)C10—C11—C6118.7 (2)
C4—C5—C6118.44 (16)C10—C11—H11120.6
C1ii—C5—C6116.28 (17)C6—C11—H11120.6
C7—C6—C11119.85 (18)C1—N1—C4107.47 (16)
C7—C6—C5123.03 (19)C1—N1—H1126.3
C11—C6—C5117.12 (18)C4—N1—H1126.3
N1—C1—C2—C3−1.2 (3)C6—C7—C8—F1−179.98 (19)
C5i—C1—C2—C3174.4 (2)C6—C7—C8—C9−0.7 (4)
C1—C2—C3—C41.9 (3)F1—C8—C9—C10−180.0 (2)
C2—C3—C4—N1−2.0 (3)C7—C8—C9—C100.7 (4)
C2—C3—C4—C5175.8 (2)C8—C9—C10—F2179.5 (2)
N1—C4—C5—C1ii4.3 (3)C8—C9—C10—C11−0.2 (4)
C3—C4—C5—C1ii−173.2 (2)F2—C10—C11—C6179.9 (2)
N1—C4—C5—C6−174.02 (18)C9—C10—C11—C6−0.4 (4)
C3—C4—C5—C68.5 (3)C7—C6—C11—C100.4 (3)
C4—C5—C6—C7−74.1 (3)C5—C6—C11—C10−180.0 (2)
C1ii—C5—C6—C7107.5 (2)C5i—C1—N1—C4−175.62 (19)
C4—C5—C6—C11106.3 (2)C2—C1—N1—C4−0.1 (2)
C1ii—C5—C6—C11−72.1 (2)C5—C4—N1—C1−176.6 (2)
C11—C6—C7—C80.1 (3)C3—C4—N1—C11.3 (2)
C5—C6—C7—C8−179.5 (2)
D—H···AD—HH···AD···AD—H···A
C7—H7···C1iii0.932.873.634 (2)140
C3—H3···F1iv0.932.663.484 (2)148
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C7—H7⋯C1i0.932.873.634 (2)140
C3—H3⋯F1ii0.932.663.484 (2)148

Symmetry codes: (i) ; (ii) .

  2 in total

1.  The hydrogen bond in the solid state.

Authors:  Thomas Steiner
Journal:  Angew Chem Int Ed Engl       Date:  2002-01-04       Impact factor: 15.336

2.  The crystal and molecular structure of triclinic tetraphenylporphyrin.

Authors:  S J Silvers; A Tulinsky
Journal:  J Am Chem Soc       Date:  1967-06-21       Impact factor: 15.419

  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.