Literature DB >> 21200747

Octane-1,8-diyldipyridinium dibromide dihydrate.

Xin Xiao, Ping-Yue Jiang, Yun-Qian Zhang, Sai-Feng Xue, Qian-Jiang Zhu.   

Abstract

The asymmetric unit of the title compound, C(18)H(26)N(2) (2+)·2Br(-)·2H(2)O, consists of one-half of the organic cation, one Br(-) anion and one water mol-ecule. The organic cation is situated on a centre of inversion. The dihedral angle between the pyridine ring and the plane of the central linkage is 59.3 (1)°. The cations, anions and water mol-ecules are linked via O-H⋯Br, C-H⋯Br and C-H⋯O hydrogen bonds, forming a three-dimensional framework.

Entities:  

Year:  2007        PMID: 21200747      PMCID: PMC2915246          DOI: 10.1107/S1600536807063970

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see: Day et al. (2000 ▶, 2002 ▶); Freeman et al. (1981 ▶); Kim et al. (2000 ▶).

Experimental

Crystal data

C18H26N2 2+·2Br−·2H2O M = 466.26 Orthorhombic, a = 9.8329 (7) Å b = 13.3000 (11) Å c = 16.5688 (13) Å V = 2166.8 (3) Å3 Z = 4 Mo Kα radiation μ = 3.75 mm−1 T = 273 (2) K 0.32 × 0.24 × 0.19 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.380, T max = 0.536 (expected range = 0.347–0.490) 21410 measured reflections 2503 independent reflections 1842 reflections with I > 2σ(I) R int = 0.034

Refinement

R[F 2 > 2σ(F 2)] = 0.029 wR(F 2) = 0.077 S = 1.01 2503 reflections 109 parameters H-atom parameters constrained Δρmax = 0.25 e Å−3 Δρmin = −0.39 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536807063970/ci2531sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536807063970/ci2531Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H26N22+·2(Br)·2H2OF000 = 952
Mr = 466.26Dx = 1.429 Mg m3
Orthorhombic, PbcaMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 21410 reflections
a = 9.8329 (7) Åθ = 2.5–27.6º
b = 13.3000 (11) ŵ = 3.75 mm1
c = 16.5688 (13) ÅT = 273 (2) K
V = 2166.8 (3) Å3Prism, colourless
Z = 40.32 × 0.24 × 0.19 mm
Bruker APEXII CCD area-detector diffractometer2503 independent reflections
Radiation source: fine-focus sealed tube1842 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.034
T = 273(2) Kθmax = 27.6º
φ and ω scansθmin = 2.5º
Absorption correction: multi-scan(SADABS; Bruker, 2005)h = −12→12
Tmin = 0.380, Tmax = 0.536k = −17→17
21410 measured reflectionsl = −15→21
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.029H-atom parameters constrained
wR(F2) = 0.077  w = 1/[σ2(Fo2) + (0.0352P)2 + 0.8723P] where P = (Fo2 + 2Fc2)/3
S = 1.01(Δ/σ)max = 0.001
2503 reflectionsΔρmax = 0.25 e Å3
109 parametersΔρmin = −0.39 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br10.28891 (2)0.652327 (19)0.328729 (15)0.05280 (11)
N10.44180 (18)0.35645 (13)0.32104 (10)0.0376 (4)
C10.3916 (3)0.40288 (17)0.38614 (14)0.0507 (6)
H10.32460.45170.38010.061*
C20.4380 (3)0.3791 (2)0.46131 (16)0.0642 (8)
H20.40140.41050.50650.077*
C30.5389 (3)0.3088 (2)0.46995 (16)0.0660 (8)
H30.57250.29310.52090.079*
C40.5895 (3)0.2622 (2)0.40288 (15)0.0588 (7)
H40.65820.21460.40770.071*
C50.5382 (2)0.28617 (18)0.32886 (13)0.0475 (6)
H50.57070.25320.28320.057*
C60.3864 (2)0.37965 (18)0.23978 (13)0.0455 (5)
H6A0.31370.42850.24530.055*
H6B0.34760.31890.21700.055*
C70.4916 (2)0.42052 (18)0.18213 (12)0.0432 (5)
H7A0.56330.37120.17490.052*
H7B0.53200.48080.20480.052*
C80.4286 (2)0.44515 (19)0.10078 (13)0.0444 (5)
H8A0.38650.38500.07910.053*
H8B0.35770.49500.10840.053*
C90.5310 (2)0.48488 (17)0.04014 (12)0.0408 (5)
H9A0.57660.54280.06330.049*
H9B0.59920.43350.03060.049*
O1W0.1270 (2)0.6061 (2)0.15455 (12)0.0973 (8)
H1WA0.04420.61310.16470.117*
H1WB0.16890.61170.19650.117*
U11U22U33U12U13U23
Br10.04958 (16)0.05876 (17)0.05006 (17)0.00012 (12)−0.00083 (11)0.01642 (11)
N10.0424 (10)0.0428 (10)0.0277 (9)−0.0036 (8)0.0058 (7)0.0044 (7)
C10.0627 (14)0.0464 (13)0.0429 (14)0.0058 (12)0.0161 (12)0.0025 (11)
C20.094 (2)0.0637 (16)0.0345 (14)−0.0017 (16)0.0104 (14)−0.0069 (12)
C30.081 (2)0.0830 (19)0.0341 (14)−0.0090 (17)−0.0084 (14)0.0108 (14)
C40.0601 (15)0.0672 (17)0.0492 (15)0.0092 (13)−0.0038 (13)0.0141 (13)
C50.0528 (14)0.0527 (14)0.0368 (13)0.0072 (11)0.0061 (11)0.0008 (11)
C60.0437 (12)0.0601 (13)0.0326 (12)−0.0035 (11)−0.0004 (10)0.0098 (11)
C70.0447 (12)0.0539 (13)0.0311 (12)−0.0047 (11)0.0010 (10)0.0064 (10)
C80.0437 (12)0.0590 (14)0.0305 (11)−0.0035 (10)−0.0010 (10)0.0069 (10)
C90.0402 (11)0.0540 (13)0.0281 (11)−0.0067 (10)−0.0031 (9)0.0036 (10)
O1W0.0625 (12)0.177 (3)0.0519 (12)0.0086 (16)−0.0006 (10)−0.0161 (14)
N1—C11.337 (3)C6—H6A0.97
N1—C51.337 (3)C6—H6B0.97
N1—C61.485 (3)C7—C81.520 (3)
C1—C21.364 (4)C7—H7A0.97
C1—H10.93C7—H7B0.97
C2—C31.370 (4)C8—C91.518 (3)
C2—H20.93C8—H8A0.97
C3—C41.366 (4)C8—H8B0.97
C3—H30.93C9—C9i1.518 (4)
C4—C51.364 (3)C9—H9A0.97
C4—H40.93C9—H9B0.97
C5—H50.93O1W—H1WA0.84
C6—C71.509 (3)O1W—H1WB0.81
C1—N1—C5120.42 (19)C7—C6—H6B108.9
C1—N1—C6120.0 (2)H6A—C6—H6B107.7
C5—N1—C6119.53 (18)C6—C7—C8111.07 (19)
N1—C1—C2120.4 (2)C6—C7—H7A109.4
N1—C1—H1119.8C8—C7—H7A109.4
C2—C1—H1119.8C6—C7—H7B109.4
C1—C2—C3119.7 (2)C8—C7—H7B109.4
C1—C2—H2120.1H7A—C7—H7B108.0
C3—C2—H2120.1C9—C8—C7113.04 (18)
C4—C3—C2119.2 (2)C9—C8—H8A109.0
C4—C3—H3120.4C7—C8—H8A109.0
C2—C3—H3120.4C9—C8—H8B109.0
C5—C4—C3119.4 (2)C7—C8—H8B109.0
C5—C4—H4120.3H8A—C8—H8B107.8
C3—C4—H4120.3C9i—C9—C8113.9 (2)
N1—C5—C4120.8 (2)C9i—C9—H9A108.8
N1—C5—H5119.6C8—C9—H9A108.8
C4—C5—H5119.6C9i—C9—H9B108.8
N1—C6—C7113.42 (17)C8—C9—H9B108.8
N1—C6—H6A108.9H9A—C9—H9B107.7
C7—C6—H6A108.9H1WA—O1W—H1WB108.2
N1—C6—H6B108.9
C5—N1—C1—C20.0 (3)C3—C4—C5—N11.8 (4)
C6—N1—C1—C2177.4 (2)C1—N1—C6—C7120.1 (2)
N1—C1—C2—C31.5 (4)C5—N1—C6—C7−62.5 (3)
C1—C2—C3—C4−1.3 (4)N1—C6—C7—C8−178.7 (2)
C2—C3—C4—C5−0.3 (4)C6—C7—C8—C9−179.0 (2)
C1—N1—C5—C4−1.6 (3)C7—C8—C9—C9i−177.0 (2)
C6—N1—C5—C4−179.0 (2)
D—H···AD—HH···AD···AD—H···A
O1W—H1WB···Br10.812.553.353 (2)173
O1W—H1WA···Br1ii0.842.573.392 (2)169
C1—H1···Br10.932.823.596 (2)141
C2—H2···O1Wiii0.932.483.271 (3)143
C5—H5···Br1iv0.932.673.588 (2)168
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1W—H1WB⋯Br10.812.553.353 (2)173
O1W—H1WA⋯Br1i0.842.573.392 (2)169
C1—H1⋯Br10.932.823.596 (2)141
C2—H2⋯O1Wii0.932.483.271 (3)143
C5—H5⋯Br1iii0.932.673.588 (2)168

Symmetry codes: (i) ; (ii) ; (iii) .

  1 in total

1.  A cucurbituril-based gyroscane: a new supramolecular form.

Authors:  Anthony I Day; Rodney J Blanch; Alan P Arnold; Susan Lorenzo; Gareth R Lewis; Ian Dance
Journal:  Angew Chem Int Ed Engl       Date:  2002-01-18       Impact factor: 15.336

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.