Literature DB >> 21200737

6,11-Dihydroxy-naphthacene-5,12-dione.

Masaaki Tomura, Hiroyuki Yamaguchi, Katsuhiko Ono, Katsuhiro Saito.   

Abstract

The mol-ecule of the title compound, C(18)H(10)O(4), is centrosymmetric and planar. A long phenolic O-H bond is observed [1.19 (9) Å], which is involved in an intra-molecular hydrogen bond between the phenolic and quinonoid O atoms. The mol-ecules pack in a herringbone pattern and are linked to each other via inter-molecular C-H⋯O hydrogen bonds (2.73-2.77 Å).

Entities:  

Year:  2007        PMID: 21200737      PMCID: PMC2924183          DOI: 10.1107/S1600536807063726

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

The crystal structure of the rhenium complex including the title compound has been reported (Sathiyendiran et al., 2007 ▶). For studies of naphthaza­rin (5,8-dihydr­oxy-1,4-naphtho­quinone), see: Fehlmann & Nigli (1965 ▶); Cradwick & Hall (1971 ▶); Herbstein et al. (1985 ▶); Rubio et al. (1985 ▶); Sarkhel et al. (2001 ▶); Savko et al. (2007 ▶). For background on intra­molecular hydrogen bonds, see: Gilli et al. (1989 ▶); Bertolasi et al. (1991 ▶); Gilli et al. (1993 ▶); Steiner & Saenger (1994 ▶). For background on inter­molecular hydrogen bonds, see: Taylor & Kennard (1982 ▶); Jagarlapudi & Desiraju (1987 ▶); Biradha et al. (1993 ▶); Batchelor et al. (2000 ▶). For background on resonance structures, see: Cradwick & Hall (1971 ▶); Shiau et al. (1980 ▶).

Experimental

Crystal data

C18H10O4 M = 290.26 Monoclinic, a = 8.85 (2) Å b = 3.750 (8) Å c = 18.74 (4) Å β = 94.55 (3)° V = 620 (2) Å3 Z = 2 Mo Kα radiation μ = 0.11 mm−1 T = 173 (2) K 0.29 × 0.07 × 0.03 mm

Data collection

Rigaku Mercury CCD diffractometer Absorption correction: none 5026 measured reflections 1347 independent reflections 668 reflections with I > 2σ(I) R int = 0.087

Refinement

R[F 2 > 2σ(F 2)] = 0.114 wR(F 2) = 0.354 S = 0.99 1347 reflections 104 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.52 e Å−3 Δρmin = −0.32 e Å−3 Data collection: CrystalClear (Molecular Structure Corporation & Rigaku, 2001 ▶); cell refinement: CrystalClear; data reduction: TEXSAN (Molecular Structure Corporation & Rigaku, 2000 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 1997 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997 ▶); molecular graphics: PLATON (Spek, 2003 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536807063726/gw2022sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536807063726/gw2022Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H10O4F(000) = 300
Mr = 290.26Dx = 1.555 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71070 Å
Hall symbol: -P 2ybcCell parameters from 928 reflections
a = 8.85 (2) Åθ = 3.1–27.5°
b = 3.750 (8) ŵ = 0.11 mm1
c = 18.74 (4) ÅT = 173 K
β = 94.55 (3)°Prism, red
V = 620 (2) Å30.29 × 0.07 × 0.03 mm
Z = 2
Rigaku Mercury CCD diffractometer668 reflections with I > 2σ(I)
Radiation source: Rotating AnodeRint = 0.087
Graphite Monochromatorθmax = 27.5°, θmin = 3.1°
Detector resolution: 14.6199 pixels mm-1h = −9→11
φ and ω scansk = −4→3
5026 measured reflectionsl = −19→24
1347 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.114Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.354H atoms treated by a mixture of independent and constrained refinement
S = 0.99w = 1/[σ2(Fo2) + (0.1532P)2 + 1.2875P] where P = (Fo2 + 2Fc2)/3
1347 reflections(Δ/σ)max = 0.053
104 parametersΔρmax = 0.52 e Å3
0 restraintsΔρmin = −0.32 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.3137 (5)0.1246 (12)0.4518 (2)0.0438 (12)
O20.1298 (5)−0.1563 (12)0.3591 (2)0.0426 (12)
H20.248 (10)−0.03 (3)0.378 (5)0.09 (3)*
C10.2384 (6)0.2682 (14)0.5696 (3)0.0317 (13)
C20.1249 (6)0.2760 (13)0.6171 (3)0.0290 (12)
C30.1583 (7)0.4134 (15)0.6871 (3)0.0363 (14)
H30.08230.41980.72010.044*
C40.3022 (7)0.5375 (15)0.7068 (3)0.0381 (15)
H40.32470.63180.75350.046*
C50.4162 (7)0.5264 (15)0.6586 (3)0.0403 (15)
H50.51510.61170.67280.048*
C60.3839 (7)0.3917 (14)0.5910 (3)0.0371 (14)
H60.46110.38230.55860.045*
C70.2079 (6)0.1277 (14)0.4965 (3)0.0294 (12)
C80.0599 (6)−0.0051 (14)0.4744 (3)0.0312 (13)
C90.0278 (7)−0.1452 (13)0.4050 (3)0.0308 (13)
U11U22U33U12U13U23
O10.034 (2)0.052 (3)0.046 (3)−0.011 (2)0.0070 (18)−0.004 (2)
O20.042 (3)0.048 (3)0.041 (2)0.000 (2)0.0186 (19)−0.0051 (19)
C10.027 (3)0.025 (3)0.043 (3)0.003 (2)0.002 (2)−0.001 (2)
C20.028 (3)0.024 (3)0.034 (3)0.000 (2)−0.005 (2)0.001 (2)
C30.049 (4)0.028 (3)0.031 (3)−0.005 (3)−0.003 (2)0.004 (2)
C40.063 (4)0.027 (3)0.023 (3)−0.001 (3)−0.008 (3)0.000 (2)
C50.042 (3)0.031 (3)0.045 (3)−0.001 (3)−0.011 (3)0.002 (3)
C60.038 (3)0.022 (3)0.052 (4)−0.004 (2)0.004 (3)0.005 (2)
C70.021 (3)0.030 (3)0.037 (3)−0.001 (2)0.005 (2)0.002 (2)
C80.036 (3)0.031 (3)0.025 (3)0.001 (2)−0.006 (2)0.012 (2)
C90.044 (3)0.021 (2)0.028 (3)−0.002 (2)0.002 (2)−0.002 (2)
O1—C71.304 (6)C4—C51.407 (9)
O2—C91.296 (7)C4—H40.9500
O2—H21.19 (9)C5—C61.373 (8)
C1—C21.395 (8)C5—H50.9500
C1—C61.398 (8)C6—H60.9500
C1—C71.472 (8)C7—C81.432 (8)
C2—C31.418 (8)C8—C91.410 (7)
C2—C9i1.467 (8)C8—C8i1.486 (11)
C3—C41.378 (9)C9—C2i1.467 (8)
C3—H30.9500
C7—O1—H2110 (3)C6—C5—H5120.1
C9—O2—H2115 (4)C4—C5—H5120.1
C2—C1—C6120.2 (5)C5—C6—C1120.4 (6)
C2—C1—C7120.9 (5)C5—C6—H6119.8
C6—C1—C7118.9 (5)C1—C6—H6119.8
C1—C2—C3119.4 (5)O1—C7—C8119.9 (5)
C1—C2—C9i120.4 (5)O1—C7—C1120.8 (5)
C3—C2—C9i120.2 (5)C8—C7—C1119.3 (5)
C2—C3—C4119.4 (5)C9—C8—C7120.6 (5)
C2—C3—H3120.3C9—C8—C8i120.2 (6)
C4—C3—H3120.3C7—C8—C8i119.2 (6)
C3—C4—C5120.8 (5)O2—C9—C8121.6 (5)
C3—C4—H4119.6O2—C9—C2i118.4 (5)
C5—C4—H4119.6C8—C9—C2i119.9 (5)
C6—C5—C4119.7 (6)
C6—C1—C2—C30.6 (8)C6—C1—C7—O1−1.4 (8)
C7—C1—C2—C3−180.0 (5)C2—C1—C7—C8−0.5 (8)
C6—C1—C2—C9i−179.7 (5)C6—C1—C7—C8178.9 (5)
C7—C1—C2—C9i−0.3 (8)O1—C7—C8—C91.1 (7)
C1—C2—C3—C40.2 (7)C1—C7—C8—C9−179.3 (5)
C9i—C2—C3—C4−179.5 (5)O1—C7—C8—C8i−179.1 (6)
C2—C3—C4—C5−0.6 (8)C1—C7—C8—C8i0.6 (8)
C3—C4—C5—C60.3 (8)C7—C8—C9—O2−0.5 (8)
C4—C5—C6—C10.5 (8)C8i—C8—C9—O2179.7 (6)
C2—C1—C6—C5−0.9 (8)C7—C8—C9—C2i−179.2 (5)
C7—C1—C6—C5179.6 (5)C8i—C8—C9—C2i1.0 (8)
C2—C1—C7—O1179.2 (5)
D—H···AD—HH···AD···AD—H···A
O2—H2···O11.19 (9)1.56 (9)2.516 (7)132 (6)
C6—H6···O1ii0.952.773.449 (9)129
C6—H6···O1iii0.952.743.382 (9)126
C3—H3···O2iv0.952.753.378 (10)124
C4—H4···O2iv0.952.733.371 (9)126
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2⋯O11.19 (9)1.56 (9)2.516 (7)132 (6)
C6—H6⋯O1i0.952.773.449 (9)129
C6—H6⋯O1ii0.952.743.382 (9)126
C3—H3⋯O2iii0.952.753.378 (10)124
C4—H4⋯O2iii0.952.733.371 (9)126

Symmetry codes: (i) ; (ii) ; (iii) .

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