Literature DB >> 21200707

1-(2-Nitro-phen-yl)-3-phenyl-thio-urea.

Yongqi Qin1, Fangfang Jian, Mingna Jiang, Xiangyan Yang.   

Abstract

The title compound, C(13)H(11)N(3)O(2)S, was prepared by reaction of 2-nitro-benzenamine, KOH and 1-isothio-cyanato-benzene in an ethanol solution at room temperature. The dihedral angles formed between the thiourea plane and the phenyl rings are 61.9 and 31.0°. The dihedral angle between the two phenyl rings is 78.1°. In the crystal structure, there are weak inter-molecular N-H⋯S and C-H⋯S hydrogen-bonding inter-actions.

Entities:  

Year:  2007        PMID: 21200707      PMCID: PMC2915211          DOI: 10.1107/S1600536807063374

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Reinbold & Morar (1984 ▶); Xue et al. (2004 ▶); Madan & Taneja (1991 ▶).

Experimental

Crystal data

C13H11N3O2S M = 273.31 Monoclinic, a = 7.3110 (15) Å b = 24.113 (5) Å c = 7.4320 (15) Å β = 90.22 (3)° V = 1310.2 (5) Å3 Z = 4 Mo Kα radiation μ = 0.25 mm−1 T = 293 (2) K 0.25 × 0.20 × 0.18 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: none 2964 measured reflections 2764 independent reflections 2022 reflections with I > 2σ(I) R int = 0.017 3 standard reflections every 100 reflections intensity decay: none

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.132 S = 1.09 2764 reflections 173 parameters H-atom parameters constrained Δρmax = 0.31 e Å−3 Δρmin = −0.41 e Å−3 Data collection: CAD-4 Software (Enraf–Nonius, 1989 ▶); cell refinement: CAD-4 Software; data reduction: NRCVAX (Gabe et al., 1989 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 1990 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997 ▶); molecular graphics: SHELXTL/PC (Sheldrick, 1990 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536807063374/at2515sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536807063374/at2515Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H11N3O2SF000 = 568
Mr = 273.31Dx = 1.386 Mg m3
Monoclinic, P21/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 25 reflections
a = 7.3110 (15) Åθ = 1.7–27.0º
b = 24.113 (5) ŵ = 0.25 mm1
c = 7.4320 (15) ÅT = 293 (2) K
β = 90.22 (3)ºBlock, yellow
V = 1310.2 (5) Å30.25 × 0.20 × 0.18 mm
Z = 4
Enraf–Nonius CAD-4 diffractometerRint = 0.017
Radiation source: fine-focus sealed tubeθmax = 27.0º
Monochromator: graphiteθmin = 1.7º
T = 293(2) Kh = 0→8
ω scansk = 0→28
Absorption correction: nonel = −8→8
2964 measured reflections3 standard reflections
2764 independent reflections every 100 reflections
2022 reflections with I > 2σ(I) intensity decay: none
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.045  w = 1/[σ2(Fo2) + (0.0588P)2 + 0.4395P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.132(Δ/σ)max < 0.001
S = 1.09Δρmax = 0.31 e Å3
2764 reflectionsΔρmin = −0.41 e Å3
173 parametersExtinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.115 (6)
Secondary atom site location: difference Fourier map
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.20879 (9)0.56603 (3)0.96789 (9)0.0669 (3)
O1−0.0828 (3)0.79863 (8)1.3139 (4)0.1026 (8)
O2−0.1250 (3)0.71304 (8)1.3693 (3)0.0785 (6)
N1−0.0460 (3)0.55266 (7)1.2122 (3)0.0556 (5)
H1A−0.05490.52061.16190.067*
N20.0901 (2)0.63776 (7)1.2248 (2)0.0482 (4)
H2A0.01450.64251.31190.058*
N3−0.0333 (3)0.75057 (8)1.3045 (3)0.0577 (5)
C1−0.1032 (4)0.57222 (10)1.5305 (3)0.0622 (6)
H1B0.02200.57311.55280.075*
C2−0.2268 (5)0.58020 (11)1.6701 (4)0.0767 (8)
H2B−0.18400.58661.78630.092*
C3−0.4120 (5)0.57870 (12)1.6372 (5)0.0844 (10)
H3A−0.49390.58481.73050.101*
C4−0.4759 (4)0.56819 (12)1.4666 (5)0.0853 (10)
H4A−0.60130.56631.44580.102*
C5−0.3554 (3)0.56029 (10)1.3246 (4)0.0635 (6)
H5A−0.39900.55331.20910.076*
C6−0.1685 (3)0.56302 (8)1.3585 (3)0.0477 (5)
C70.0815 (3)0.58703 (9)1.1440 (3)0.0462 (5)
C80.2032 (3)0.68340 (8)1.1878 (2)0.0423 (5)
C90.3819 (3)0.67718 (9)1.1219 (3)0.0509 (5)
H9A0.42770.64171.10300.061*
C100.4912 (3)0.72225 (11)1.0846 (3)0.0601 (6)
H10A0.60860.71671.04030.072*
C110.4284 (4)0.77548 (10)1.1125 (3)0.0649 (7)
H11A0.50150.80571.08360.078*
C120.2561 (4)0.78358 (9)1.1834 (3)0.0599 (6)
H12A0.21430.81931.20580.072*
C130.1449 (3)0.73817 (8)1.2216 (3)0.0465 (5)
U11U22U33U12U13U23
S10.0690 (4)0.0677 (4)0.0644 (4)−0.0224 (3)0.0339 (3)−0.0228 (3)
O10.0986 (16)0.0629 (12)0.147 (2)0.0267 (11)0.0178 (14)−0.0059 (12)
O20.0682 (11)0.0700 (12)0.0977 (14)0.0081 (9)0.0318 (10)−0.0063 (10)
N10.0613 (12)0.0468 (10)0.0589 (11)−0.0139 (8)0.0251 (9)−0.0121 (8)
N20.0478 (10)0.0446 (9)0.0523 (10)−0.0057 (7)0.0190 (8)−0.0050 (7)
N30.0621 (12)0.0547 (11)0.0562 (11)0.0099 (10)−0.0038 (9)−0.0074 (9)
C10.0589 (14)0.0683 (15)0.0595 (15)−0.0087 (11)0.0147 (11)−0.0049 (11)
C20.104 (2)0.0671 (16)0.0595 (15)−0.0087 (15)0.0338 (15)−0.0044 (12)
C30.092 (2)0.0666 (17)0.095 (2)0.0051 (15)0.0597 (19)0.0042 (15)
C40.0514 (15)0.0791 (19)0.126 (3)0.0074 (13)0.0338 (16)0.0107 (18)
C50.0527 (14)0.0594 (14)0.0787 (17)0.0021 (11)0.0120 (12)0.0061 (12)
C60.0504 (12)0.0376 (10)0.0552 (12)−0.0051 (8)0.0195 (9)0.0013 (8)
C70.0441 (11)0.0480 (11)0.0466 (11)−0.0048 (9)0.0117 (8)−0.0016 (9)
C80.0460 (11)0.0449 (10)0.0362 (10)−0.0060 (8)0.0024 (8)0.0019 (8)
C90.0464 (11)0.0558 (12)0.0505 (12)−0.0058 (9)0.0070 (9)−0.0018 (9)
C100.0529 (13)0.0753 (17)0.0522 (13)−0.0214 (11)0.0042 (10)−0.0002 (11)
C110.0758 (17)0.0615 (15)0.0575 (14)−0.0303 (13)−0.0017 (12)0.0054 (11)
C120.0816 (17)0.0441 (11)0.0540 (13)−0.0103 (11)−0.0096 (12)0.0012 (9)
C130.0517 (12)0.0484 (11)0.0394 (10)−0.0013 (9)−0.0041 (9)−0.0005 (8)
S1—C71.686 (2)C3—H3A0.9300
O1—N31.216 (3)C4—C51.391 (4)
O2—N31.226 (3)C4—H4A0.9300
N1—C71.348 (3)C5—C61.390 (3)
N1—C61.433 (3)C5—H5A0.9300
N1—H1A0.8600C8—C91.405 (3)
N2—C71.364 (3)C8—C131.411 (3)
N2—C81.404 (2)C9—C101.378 (3)
N2—H2A0.8600C9—H9A0.9300
N3—C131.474 (3)C10—C111.379 (4)
C1—C61.381 (4)C10—H10A0.9300
C1—C21.392 (3)C11—C121.381 (4)
C1—H1B0.9300C11—H11A0.9300
C2—C31.375 (5)C12—C131.394 (3)
C2—H2B0.9300C12—H12A0.9300
C3—C41.373 (5)
C7—N1—C6127.83 (17)C1—C6—C5120.8 (2)
C7—N1—H1A116.1C1—C6—N1121.0 (2)
C6—N1—H1A116.1C5—C6—N1118.1 (2)
C7—N2—C8129.97 (16)N1—C7—N2114.60 (17)
C7—N2—H2A115.0N1—C7—S1119.45 (16)
C8—N2—H2A115.0N2—C7—S1125.92 (15)
O1—N3—O2121.2 (2)N2—C8—C9122.26 (18)
O1—N3—C13118.8 (2)N2—C8—C13121.35 (18)
O2—N3—C13120.00 (18)C9—C8—C13116.35 (18)
C6—C1—C2119.3 (3)C10—C9—C8121.8 (2)
C6—C1—H1B120.4C10—C9—H9A119.1
C2—C1—H1B120.4C8—C9—H9A119.1
C3—C2—C1120.3 (3)C9—C10—C11120.7 (2)
C3—C2—H2B119.8C9—C10—H10A119.7
C1—C2—H2B119.8C11—C10—H10A119.7
C4—C3—C2120.0 (2)C10—C11—C12119.6 (2)
C4—C3—H3A120.0C10—C11—H11A120.2
C2—C3—H3A120.0C12—C11—H11A120.2
C3—C4—C5120.8 (3)C11—C12—C13120.0 (2)
C3—C4—H4A119.6C11—C12—H12A120.0
C5—C4—H4A119.6C13—C12—H12A120.0
C6—C5—C4118.8 (3)C12—C13—C8121.5 (2)
C6—C5—H5A120.6C12—C13—N3116.3 (2)
C4—C5—H5A120.6C8—C13—N3122.17 (18)
C6—C1—C2—C30.3 (4)N2—C8—C9—C10179.4 (2)
C1—C2—C3—C41.3 (4)C13—C8—C9—C10−2.8 (3)
C2—C3—C4—C5−1.6 (4)C8—C9—C10—C110.5 (3)
C3—C4—C5—C60.2 (4)C9—C10—C11—C121.9 (4)
C2—C1—C6—C5−1.6 (3)C10—C11—C12—C13−1.9 (4)
C2—C1—C6—N1−177.8 (2)C11—C12—C13—C8−0.6 (3)
C4—C5—C6—C11.4 (3)C11—C12—C13—N3177.4 (2)
C4—C5—C6—N1177.6 (2)N2—C8—C13—C12−179.37 (19)
C7—N1—C6—C1−63.3 (3)C9—C8—C13—C122.9 (3)
C7—N1—C6—C5120.4 (3)N2—C8—C13—N32.8 (3)
C6—N1—C7—N2−1.0 (3)C9—C8—C13—N3−174.95 (18)
C6—N1—C7—S1−179.05 (19)O1—N3—C13—C129.1 (3)
C8—N2—C7—N1−179.2 (2)O2—N3—C13—C12−167.8 (2)
C8—N2—C7—S1−1.3 (3)O1—N3—C13—C8−172.9 (2)
C7—N2—C8—C9−31.8 (3)O2—N3—C13—C810.2 (3)
C7—N2—C8—C13150.6 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1A···S1i0.862.563.3744 (19)158
C3—H3A···S1ii0.932.843.725 (3)159
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯S1i0.862.563.3744 (19)158
C3—H3A⋯S1ii0.932.843.725 (3)159

Symmetry codes: (i) ; (ii) .

  1 in total

1.  Design, Synthesis and Biological Evaluation of Novel Pyrimido[4,5-d]pyrimidine CDK2 Inhibitors as Anti-Tumor Agents.

Authors:  Samir M El-Moghazy; Diaa A Ibrahim; Nagwa M Abdelgawad; Nahla A H Farag; Ahmad S El-Khouly
Journal:  Sci Pharm       Date:  2011-05-08
  1 in total

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