Literature DB >> 21200696

5-Amino-3-(4-pyrid-yl)isoxazole.

Zheng Yao1, Jian-Cheng Deng.   

Abstract

In the title compound, C(8)H(7)N(3)O, there are two independent mol-ecules in the asymmetric unit, in which the angles between the pyridine ring and the isoxazole ring are 35.8 (6) and 10.6 (2)°. The crystal packing is stabilized by N-H⋯N hydrogen bonds, which result in the mol-ecules forming a two-dimensional supra-molecular layer.

Entities:  

Year:  2007        PMID: 21200696      PMCID: PMC2915201          DOI: 10.1107/S160053680706309X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

The title compound was prepared according to a known procedure (Schmidt et al., 1966 ▶). For hydrogen-bond motif definitions, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C8H7N3O M = 161.17 Monoclinic, a = 14.6411 (13) Å b = 10.9272 (10) Å c = 10.0060 (9) Å β = 106.9870 (10)° V = 1531.0 (2) Å3 Z = 8 Mo Kα radiation μ = 0.10 mm−1 T = 187 (2) K 0.42 × 0.18 × 0.10 mm

Data collection

Bruker APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.960, T max = 0.990 8396 measured reflections 3018 independent reflections 2509 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.120 S = 1.02 3018 reflections 218 parameters H-atom parameters constrained Δρmax = 0.23 e Å−3 Δρmin = −0.23 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT (Bruker, 2003 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997 ▶); molecular graphics: SHELXTL (Bruker, 1997 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053680706309X/bv2079sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680706309X/bv2079Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H7N3OF000 = 672
Mr = 161.17Dx = 1.398 Mg m3
Monoclinic, P21/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2830 reflections
a = 14.6411 (13) Åθ = 2.4–25.9º
b = 10.9272 (10) ŵ = 0.10 mm1
c = 10.0060 (9) ÅT = 187 (2) K
β = 106.9870 (10)ºBlock, colourless
V = 1531.0 (2) Å30.42 × 0.18 × 0.10 mm
Z = 8
Bruker APEX CCD area-detector diffractometer3018 independent reflections
Radiation source: fine-focus sealed tube2509 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.025
T = 187(2) Kθmax = 26.0º
φ and ω scansθmin = 1.5º
Absorption correction: multi-scan(SADABS; Sheldrick, 1996)h = −18→14
Tmin = 0.960, Tmax = 0.990k = −10→13
8396 measured reflectionsl = −12→12
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.043  w = 1/[σ2(Fo2) + (0.07P)2 + 0.2315P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.120(Δ/σ)max < 0.001
S = 1.02Δρmax = 0.23 e Å3
3018 reflectionsΔρmin = −0.23 e Å3
218 parametersExtinction correction: SHELXL97 (Sheldrick, 1997), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0047 (10)
Secondary atom site location: difference Fourier map
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.46333 (7)0.85688 (9)0.20940 (11)0.0346 (3)
O20.00420 (8)0.88480 (9)0.77638 (11)0.0336 (3)
N10.79693 (9)0.83254 (13)−0.07659 (13)0.0383 (3)
N20.52225 (9)0.80823 (11)0.13072 (13)0.0337 (3)
N30.44141 (10)1.03237 (12)0.31848 (14)0.0388 (3)
H3A0.39460.99500.34070.047*
H3B0.45581.10860.34470.047*
N40.28672 (10)0.90935 (13)0.40458 (14)0.0398 (3)
N50.06798 (9)0.93321 (11)0.70626 (14)0.0359 (3)
N6−0.06051 (10)0.70441 (11)0.81376 (14)0.0377 (3)
H6A−0.09270.74580.86060.045*
H6B−0.06750.62460.80480.045*
C10.72429 (11)0.75481 (15)−0.08875 (15)0.0358 (4)
H10.72220.6830−0.14300.043*
C20.65244 (11)0.77244 (14)−0.02749 (15)0.0346 (4)
H20.60260.7141−0.03980.042*
C30.65383 (10)0.87660 (13)0.05244 (14)0.0271 (3)
C40.72841 (11)0.95824 (14)0.06540 (16)0.0368 (4)
H40.73221.03100.11880.044*
C50.79718 (12)0.93253 (15)−0.00027 (18)0.0419 (4)
H50.84770.98960.00960.050*
C60.58040 (10)0.89855 (13)0.12468 (13)0.0270 (3)
C70.49043 (11)0.97363 (13)0.24510 (14)0.0289 (3)
C80.56482 (10)1.00383 (13)0.19470 (14)0.0292 (3)
H80.59841.07930.20490.035*
C90.29569 (12)0.80896 (15)0.48351 (17)0.0399 (4)
H90.34610.75400.48450.048*
C100.23625 (11)0.77991 (14)0.56385 (16)0.0351 (4)
H100.24520.70650.61700.042*
C110.16304 (10)0.86076 (13)0.56504 (14)0.0286 (3)
C120.15291 (11)0.96543 (14)0.48390 (15)0.0331 (4)
H120.10381.02270.48200.040*
C130.21520 (12)0.98536 (15)0.40568 (16)0.0379 (4)
H130.20681.05700.34960.045*
C140.09696 (10)0.83758 (13)0.65003 (14)0.0272 (3)
C150.05754 (11)0.72799 (13)0.67909 (15)0.0310 (3)
H150.06890.64760.65140.037*
C16−0.00128 (10)0.76260 (13)0.75652 (14)0.0274 (3)
U11U22U33U12U13U23
O10.0346 (6)0.0288 (6)0.0488 (6)−0.0019 (4)0.0251 (5)−0.0016 (5)
O20.0403 (6)0.0237 (5)0.0474 (6)−0.0025 (4)0.0294 (5)−0.0020 (4)
N10.0352 (7)0.0459 (8)0.0394 (7)0.0043 (6)0.0198 (6)0.0003 (6)
N20.0330 (7)0.0304 (7)0.0443 (7)0.0000 (5)0.0216 (6)−0.0034 (5)
N30.0443 (8)0.0306 (7)0.0545 (8)−0.0018 (6)0.0347 (7)−0.0025 (6)
N40.0369 (8)0.0452 (8)0.0452 (7)−0.0045 (6)0.0242 (6)−0.0018 (6)
N50.0415 (8)0.0270 (7)0.0502 (8)−0.0038 (6)0.0303 (6)0.0000 (6)
N60.0488 (8)0.0247 (7)0.0527 (8)−0.0031 (6)0.0353 (7)−0.0018 (6)
C10.0382 (9)0.0391 (9)0.0328 (8)0.0022 (7)0.0146 (7)−0.0053 (7)
C20.0331 (8)0.0370 (9)0.0361 (8)−0.0039 (7)0.0138 (7)−0.0038 (7)
C30.0270 (7)0.0287 (8)0.0268 (7)0.0030 (6)0.0098 (6)0.0026 (6)
C40.0364 (9)0.0340 (9)0.0458 (9)−0.0031 (7)0.0209 (7)−0.0060 (7)
C50.0382 (9)0.0418 (9)0.0538 (10)−0.0065 (7)0.0263 (8)−0.0063 (8)
C60.0251 (7)0.0283 (7)0.0284 (7)0.0005 (6)0.0088 (6)0.0043 (6)
C70.0321 (8)0.0258 (8)0.0313 (7)0.0020 (6)0.0129 (6)0.0030 (6)
C80.0308 (8)0.0269 (7)0.0343 (7)−0.0030 (6)0.0164 (6)−0.0006 (6)
C90.0351 (9)0.0421 (10)0.0491 (9)0.0051 (7)0.0225 (7)0.0015 (8)
C100.0353 (8)0.0328 (8)0.0417 (8)0.0037 (7)0.0181 (7)0.0040 (7)
C110.0270 (7)0.0300 (8)0.0312 (7)−0.0035 (6)0.0124 (6)−0.0026 (6)
C120.0336 (8)0.0314 (8)0.0398 (8)0.0011 (6)0.0193 (7)0.0023 (7)
C130.0431 (9)0.0347 (9)0.0423 (9)−0.0030 (7)0.0225 (7)0.0038 (7)
C140.0266 (7)0.0268 (7)0.0301 (7)0.0015 (6)0.0113 (6)0.0017 (6)
C150.0387 (8)0.0223 (7)0.0386 (8)0.0016 (6)0.0214 (7)0.0006 (6)
C160.0309 (7)0.0227 (7)0.0322 (7)0.0010 (6)0.0150 (6)0.0016 (6)
O1—C71.3527 (17)C3—C41.386 (2)
O1—N21.4295 (14)C3—C61.4798 (18)
O2—C161.3490 (17)C4—C51.382 (2)
O2—N51.4237 (14)C4—H40.9500
N1—C51.332 (2)C5—H50.9500
N1—C11.339 (2)C6—C81.3999 (19)
N2—C61.3164 (18)C7—C81.3677 (19)
N3—C71.3319 (18)C8—H80.9500
N3—H3A0.8800C9—C101.383 (2)
N3—H3B0.8800C9—H90.9500
N4—C91.336 (2)C10—C111.392 (2)
N4—C131.339 (2)C10—H100.9500
N5—C141.3145 (17)C11—C121.385 (2)
N6—C161.3322 (18)C11—C141.4847 (18)
N6—H6A0.8800C12—C131.3816 (19)
N6—H6B0.8800C12—H120.9500
C1—C21.377 (2)C13—H130.9500
C1—H10.9500C14—C151.3963 (19)
C2—C31.388 (2)C15—C161.3692 (19)
C2—H20.9500C15—H150.9500
C7—O1—N2108.58 (10)N3—C7—O1115.87 (13)
C16—O2—N5108.34 (10)N3—C7—C8134.62 (14)
C5—N1—C1116.20 (13)O1—C7—C8109.51 (12)
C6—N2—O1104.42 (11)C7—C8—C6104.48 (12)
C7—N3—H3A120.0C7—C8—H8127.8
C7—N3—H3B120.0C6—C8—H8127.8
H3A—N3—H3B120.0N4—C9—C10124.22 (15)
C9—N4—C13116.52 (13)N4—C9—H9117.9
C14—N5—O2104.82 (10)C10—C9—H9117.9
C16—N6—H6A120.0C9—C10—C11118.44 (14)
C16—N6—H6B120.0C9—C10—H10120.8
H6A—N6—H6B120.0C11—C10—H10120.8
N1—C1—C2124.11 (14)C12—C11—C10118.03 (13)
N1—C1—H1117.9C12—C11—C14120.03 (13)
C2—C1—H1117.9C10—C11—C14121.94 (13)
C1—C2—C3119.13 (14)C13—C12—C11119.13 (14)
C1—C2—H2120.4C13—C12—H12120.4
C3—C2—H2120.4C11—C12—H12120.4
C4—C3—C2117.40 (13)N4—C13—C12123.65 (15)
C4—C3—C6120.98 (13)N4—C13—H13118.2
C2—C3—C6121.60 (13)C12—C13—H13118.2
C5—C4—C3119.20 (14)N5—C14—C15112.83 (12)
C5—C4—H4120.4N5—C14—C11117.08 (12)
C3—C4—H4120.4C15—C14—C11130.08 (12)
N1—C5—C4123.96 (15)C16—C15—C14104.33 (12)
N1—C5—H5118.0C16—C15—H15127.8
C4—C5—H5118.0C14—C15—H15127.8
N2—C6—C8113.02 (12)N6—C16—O2115.30 (12)
N2—C6—C3118.22 (13)N6—C16—C15135.03 (14)
C8—C6—C3128.72 (13)O2—C16—C15109.67 (12)
D—H···AD—HH···AD···AD—H···A
N3—H3A···N40.882.092.970 (2)177
N3—H3B···N2i0.882.203.077 (2)169
N6—H6A···N1ii0.882.122.976 (2)164
N6—H6B···N5iii0.882.092.970 (2)174
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H3A⋯N40.882.092.970 (2)177
N3—H3B⋯N2i0.882.203.077 (2)169
N6—H6A⋯N1ii0.882.122.976 (2)164
N6—H6B⋯N5iii0.882.092.970 (2)174

Symmetry codes: (i) ; (ii) ; (iii) .

  1 in total

1.  Isopropyl 3-phenyl-isoxazole-5-carboxyl-ate.

Authors:  Li Wang; Xue-Ying Liu; Zheng-Wei Li; Sheng-Yong Zhang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-04-13
  1 in total

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