Literature DB >> 21200690

3,7,11,19,23,27-Hexaaza-tricyclo-[27.3.1.1]tetra-triaconta-1(32),13,15,17(34),29(33),30-hexa-ene hexa-chloride tetra-hydrate.

Hai-Yan Liu, Guo-Hua Wei, Jian-Fang Ma.   

Abstract

The title compound, C(28)H(52)N(6) (6+)·6Cl(-)·4H(2)O, is a dinucleating 28-membered centrosymmetric hexa-azamacrocyclic complex. The macrocyclic ligand adopts a chair-like conformation, with the crystallographic inversion center located in the macrocyclic cavity. The six n class="Chemical">chloride ions and four water mol-ecules are situated symmetrically outside the macrocyclic cavity. The crystal structure is stabilized by N-H⋯Cl, N-H⋯O and O-H⋯Cl hydrogen bonds.

Entities:  

Year:  2007        PMID: 21200690      PMCID: PMC2915196          DOI: 10.1107/S1600536807063064

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For studies on hexa­azamacrocyclic complexes, see: Llobet et al. (1994 ▶). For related literature, see: Anda et al. (2000 ▶); Costas et al. (2004 ▶); Lu et al. (1995 ▶).

Experimental

Crystal data

C28H52N6 6+·6Cl−·4H2O M = 757.52 Monoclinic, a = 17.012 (7) Å b = 7.469 (2) Å c = 17.329 (7) Å β = 113.841 (13)° V = 2014.0 (13) Å3 Z = 2 Mo Kα radiation μ = 0.46 mm−1 T = 293 (2) K 0.19 × 0.18 × 0.14 mm

Data collection

Rigaku R-AXIS RAPID diffractometer Absorption correction: multi-scan (Higashi, 1995 ▶) T min = 0.895, T max = 0.932 18546 measured reflections 4594 independent reflections 2416 reflections with I > 2σ(I) R int = 0.102

Refinement

R[F 2 > 2σ(F 2)] = 0.059 wR(F 2) = 0.130 S = 1.04 4594 reflections 235 parameters 8 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.24 e Å−3 Δρmin = −0.26 e Å−3 Data collection: PROCESS-AUTO (Rigaku, 1998 ▶); cell refinement: PROCESS-AUTO; data reduction: PROCESS-AUTO; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997 ▶); molecular graphics: SHELXTL-Plus (Sheldrick, 1990 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536807063064/ci2525sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536807063064/ci2525Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C28H52N66+·6Cl·4H2OF000 = 808
Mr = 757.52Dx = 1.249 Mg m3
Monoclinic, P21/cMo Kα radiation λ = 0.71069 Å
Hall symbol: -P 2ybcCell parameters from 4594 reflections
a = 17.012 (7) Åθ = 3.0–27.5º
b = 7.469 (2) ŵ = 0.46 mm1
c = 17.329 (7) ÅT = 293 (2) K
β = 113.841 (13)ºBlock, colourless
V = 2014.0 (13) Å30.19 × 0.18 × 0.15 mm
Z = 2
Rigaku R-AXIS RAPID diffractometer4594 independent reflections
Radiation source: fine-focus sealed tube2416 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.102
Detector resolution: 10.0 pixels mm-1θmax = 27.5º
T = 293(2) Kθmin = 3.0º
ω scansh = −22→22
Absorption correction: multi-scan(Higashi, 1995)k = −9→8
Tmin = 0.895, Tmax = 0.932l = −22→22
18546 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.059H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.130  w = 1/[σ2(Fo2) + (0.0489P)2 + 0.1273P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max = 0.001
4594 reflectionsΔρmax = 0.24 e Å3
235 parametersΔρmin = −0.26 e Å3
8 restraintsExtinction correction: none
Primary atom site location: structure-invariant direct methods
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.82877 (18)0.1791 (4)0.39938 (18)0.0355 (7)
C20.84179 (18)0.0147 (4)0.44031 (19)0.0368 (7)
H20.8105−0.08430.41150.044*
C30.90031 (19)−0.0047 (4)0.52305 (19)0.0350 (7)
C40.94848 (19)0.1433 (4)0.5644 (2)0.0400 (8)
H40.98900.13200.61960.048*
C50.9369 (2)0.3061 (4)0.5244 (2)0.0450 (8)
H50.96930.40440.55280.054*
C60.8769 (2)0.3245 (4)0.4419 (2)0.0420 (8)
H60.86920.43510.41510.050*
C70.76289 (18)0.1935 (5)0.30992 (19)0.0431 (8)
H7A0.78560.26860.27810.052*
H7B0.75270.07540.28450.052*
C80.63910 (18)0.1810 (4)0.35545 (18)0.0367 (7)
H8A0.67560.19540.41490.044*
H8B0.63290.05390.34280.044*
C90.55173 (19)0.2631 (4)0.33619 (19)0.0395 (8)
H9A0.55800.39110.34650.047*
H9B0.51490.24470.27710.047*
C100.51067 (18)0.1803 (4)0.39031 (19)0.0385 (7)
H10A0.50660.05170.38200.046*
H10B0.54600.20370.44930.046*
C110.37784 (18)0.1881 (4)0.41939 (19)0.0411 (8)
H11A0.40350.23920.47560.049*
H11B0.38380.05900.42450.049*
C120.28364 (19)0.2373 (4)0.3786 (2)0.0435 (8)
H12A0.27820.36450.36630.052*
H12B0.25660.17340.32560.052*
C130.23772 (18)0.1922 (4)0.4348 (2)0.0412 (8)
H13A0.25360.07280.45770.049*
H13B0.25440.27620.48140.049*
C140.08870 (19)0.1827 (4)0.4337 (2)0.0434 (8)
H14A0.02890.19770.39570.052*
H14B0.10330.27690.47570.052*
N10.67900 (17)0.2703 (4)0.30374 (17)0.0345 (6)
H1A0.683 (2)0.3817 (17)0.3174 (19)0.049 (10)*
H1B0.6425 (19)0.256 (4)0.2505 (19)0.037 (8)*
N20.42311 (16)0.2566 (4)0.36763 (17)0.0341 (6)
H2A0.4253 (18)0.375 (4)0.3706 (18)0.038 (9)*
H2B0.391 (2)0.238 (4)0.309 (2)0.052 (10)*
N30.14354 (16)0.2017 (4)0.38479 (18)0.0385 (6)
H3A0.129 (2)0.303 (2)0.3601 (18)0.053 (11)*
H3B0.130 (2)0.120 (3)0.3470 (14)0.046 (10)*
O1W0.2694 (2)0.7467 (6)0.4322 (2)0.1099 (12)
H1O0.226 (2)0.690 (7)0.400 (3)0.165*
H2O0.307 (2)0.711 (8)0.416 (4)0.165*
O2W0.09052 (17)−0.0279 (3)0.24667 (18)0.0595 (7)
H3O0.090 (3)−0.1386 (18)0.256 (3)0.089*
H4O0.0390 (11)0.005 (5)0.232 (3)0.089*
Cl10.43151 (6)0.67844 (11)0.38468 (5)0.0500 (2)
Cl20.68078 (6)0.68054 (11)0.32358 (5)0.0545 (3)
Cl30.10025 (6)0.55940 (11)0.28508 (6)0.0543 (3)
U11U22U33U12U13U23
C10.0243 (15)0.0496 (19)0.0374 (16)0.0022 (15)0.0175 (13)0.0018 (15)
C20.0258 (15)0.0446 (18)0.0432 (17)−0.0034 (13)0.0172 (14)−0.0063 (15)
C30.0252 (15)0.0397 (17)0.0454 (18)0.0035 (13)0.0197 (14)0.0033 (15)
C40.0295 (16)0.054 (2)0.0393 (17)−0.0024 (15)0.0172 (14)0.0001 (16)
C50.0406 (19)0.0457 (19)0.0478 (19)−0.0110 (15)0.0169 (16)−0.0032 (16)
C60.0391 (18)0.0430 (18)0.0475 (19)−0.0013 (15)0.0213 (15)0.0061 (16)
C70.0331 (17)0.064 (2)0.0373 (17)0.0027 (16)0.0192 (14)−0.0028 (16)
C80.0329 (16)0.0444 (17)0.0362 (16)0.0022 (14)0.0174 (14)0.0044 (14)
C90.0350 (17)0.0436 (17)0.0449 (18)0.0044 (14)0.0210 (15)0.0038 (15)
C100.0293 (16)0.0456 (18)0.0400 (17)0.0042 (14)0.0133 (14)0.0056 (15)
C110.0302 (16)0.0512 (19)0.0434 (18)−0.0002 (15)0.0165 (14)0.0063 (16)
C120.0327 (17)0.053 (2)0.0496 (19)0.0028 (15)0.0213 (15)0.0107 (16)
C130.0279 (16)0.054 (2)0.0423 (17)−0.0007 (15)0.0151 (14)0.0043 (16)
C140.0343 (17)0.0475 (19)0.057 (2)0.0081 (15)0.0279 (16)0.0075 (16)
N10.0321 (14)0.0430 (17)0.0290 (14)−0.0003 (13)0.0130 (12)−0.0010 (13)
N20.0267 (14)0.0355 (15)0.0413 (16)−0.0016 (12)0.0152 (12)−0.0004 (13)
N30.0328 (14)0.0379 (16)0.0460 (16)0.0016 (13)0.0170 (13)0.0068 (15)
O1W0.077 (2)0.147 (3)0.101 (3)−0.015 (2)0.031 (2)−0.065 (2)
O2W0.0507 (16)0.0587 (15)0.0750 (17)−0.0019 (14)0.0317 (15)−0.0071 (15)
Cl10.0533 (5)0.0491 (5)0.0392 (4)−0.0022 (4)0.0098 (4)−0.0021 (4)
Cl20.0599 (6)0.0452 (5)0.0469 (5)−0.0075 (4)0.0096 (4)−0.0035 (4)
Cl30.0492 (5)0.0495 (5)0.0622 (6)−0.0017 (4)0.0206 (4)0.0085 (4)
C1—C61.380 (4)C11—N21.489 (4)
C1—C21.391 (4)C11—C121.512 (4)
C1—C71.505 (4)C11—H11A0.97
C2—C31.383 (4)C11—H11B0.97
C2—H20.93C12—C131.512 (4)
C3—C41.390 (4)C12—H12A0.97
C3—C14i1.500 (4)C12—H12B0.97
C4—C51.374 (4)C13—N31.483 (4)
C4—H40.93C13—H13A0.97
C5—C61.387 (4)C13—H13B0.97
C5—H50.93C14—N31.500 (4)
C6—H60.93C14—C3i1.500 (4)
C7—N11.501 (4)C14—H14A0.97
C7—H7A0.97C14—H14B0.97
C7—H7B0.97N1—H1A0.861 (10)
C8—N11.483 (4)N1—H1B0.89 (3)
C8—C91.515 (4)N2—H2A0.89 (3)
C8—H8A0.97N2—H2B0.95 (3)
C8—H8B0.97N3—H3A0.857 (10)
C9—C101.510 (4)N3—H3B0.857 (10)
C9—H9A0.97O1W—H1O0.84 (4)
C9—H9B0.97O1W—H2O0.84 (5)
C10—N21.492 (4)O2W—H3O0.841 (10)
C10—H10A0.97O2W—H4O0.84 (3)
C10—H10B0.97
C6—C1—C2119.0 (3)N2—C11—H11A109.7
C6—C1—C7121.9 (3)C12—C11—H11A109.7
C2—C1—C7119.1 (3)N2—C11—H11B109.7
C3—C2—C1121.4 (3)C12—C11—H11B109.7
C3—C2—H2119.3H11A—C11—H11B108.2
C1—C2—H2119.3C13—C12—C11111.7 (3)
C2—C3—C4118.6 (3)C13—C12—H12A109.3
C2—C3—C14i120.1 (3)C11—C12—H12A109.3
C4—C3—C14i121.3 (3)C13—C12—H12B109.3
C5—C4—C3120.7 (3)C11—C12—H12B109.3
C5—C4—H4119.7H12A—C12—H12B107.9
C3—C4—H4119.7N3—C13—C12109.3 (3)
C4—C5—C6120.2 (3)N3—C13—H13A109.8
C4—C5—H5119.9C12—C13—H13A109.8
C6—C5—H5119.9N3—C13—H13B109.8
C1—C6—C5120.2 (3)C12—C13—H13B109.8
C1—C6—H6119.9H13A—C13—H13B108.3
C5—C6—H6119.9N3—C14—C3i112.7 (2)
N1—C7—C1113.0 (2)N3—C14—H14A109.1
N1—C7—H7A109.0C3i—C14—H14A109.1
C1—C7—H7A109.0N3—C14—H14B109.1
N1—C7—H7B109.0C3i—C14—H14B109.1
C1—C7—H7B109.0H14A—C14—H14B107.8
H7A—C7—H7B107.8C8—N1—C7116.1 (2)
N1—C8—C9109.4 (2)C8—N1—H1A106 (2)
N1—C8—H8A109.8C7—N1—H1A112 (2)
C9—C8—H8A109.8C8—N1—H1B106 (2)
N1—C8—H8B109.8C7—N1—H1B106 (2)
C9—C8—H8B109.8H1A—N1—H1B110 (3)
H8A—C8—H8B108.2C11—N2—C10114.5 (2)
C10—C9—C8110.9 (2)C11—N2—H2A109 (2)
C10—C9—H9A109.5C10—N2—H2A110.6 (19)
C8—C9—H9A109.5C11—N2—H2B112 (2)
C10—C9—H9B109.5C10—N2—H2B108 (2)
C8—C9—H9B109.5H2A—N2—H2B102 (3)
H9A—C9—H9B108.1C13—N3—C14115.9 (3)
N2—C10—C9110.1 (2)C13—N3—H3A111 (2)
N2—C10—H10A109.6C14—N3—H3A104 (2)
C9—C10—H10A109.6C13—N3—H3B108 (2)
N2—C10—H10B109.6C14—N3—H3B109 (2)
C9—C10—H10B109.6H3A—N3—H3B108 (3)
H10A—C10—H10B108.2H1O—O1W—H2O102 (5)
N2—C11—C12110.0 (2)H3O—O2W—H4O105 (4)
C6—C1—C2—C31.6 (5)C2—C1—C7—N199.6 (3)
C7—C1—C2—C3−178.7 (3)N1—C8—C9—C10−177.8 (3)
C1—C2—C3—C4−2.0 (5)C8—C9—C10—N2−177.3 (2)
C1—C2—C3—C14i178.4 (3)N2—C11—C12—C13−172.3 (3)
C2—C3—C4—C51.4 (5)C11—C12—C13—N3−166.5 (3)
C14i—C3—C4—C5−179.1 (3)C9—C8—N1—C7−174.9 (2)
C3—C4—C5—C6−0.3 (5)C1—C7—N1—C8−53.3 (4)
C2—C1—C6—C5−0.5 (5)C12—C11—N2—C10−166.3 (3)
C7—C1—C6—C5179.8 (3)C9—C10—N2—C11−178.1 (3)
C4—C5—C6—C1−0.2 (5)C12—C13—N3—C14−172.8 (3)
C6—C1—C7—N1−80.7 (4)C3i—C14—N3—C13−62.0 (4)
D—H···AD—HH···AD···AD—H···A
N1—H1A···Cl20.86 (2)2.24 (1)3.082 (3)168 (3)
N1—H1B···Cl1ii0.89 (3)2.24 (3)3.115 (3)169 (3)
O1W—H1O···Cl30.84 (4)2.46 (5)3.287 (4)169 (4)
N2—H2A···Cl10.89 (3)2.28 (3)3.162 (3)177 (3)
N2—H2B···Cl2ii0.95 (3)2.17 (3)3.113 (3)177 (3)
O1W—H2O···Cl10.84 (5)2.40 (5)3.222 (4)166 (5)
N3—H3A···Cl30.85 (2)2.25 (2)3.104 (3)173 (3)
N3—H3B···O2W0.86 (2)1.94 (2)2.782 (4)169 (2)
O2W—H3O···Cl3iii0.84 (2)2.30 (2)3.144 (3)176 (6)
O2W—H4O···Cl3iv0.84 (3)2.30 (3)3.133 (4)168 (4)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯Cl20.86 (2)2.24 (1)3.082 (3)168 (3)
N1—H1B⋯Cl1i0.89 (3)2.24 (3)3.115 (3)169 (3)
O1W—H1O⋯Cl30.84 (4)2.46 (5)3.287 (4)169 (4)
N2—H2A⋯Cl10.89 (3)2.28 (3)3.162 (3)177 (3)
N2—H2B⋯Cl2i0.95 (3)2.17 (3)3.113 (3)177 (3)
O1W—H2O⋯Cl10.84 (5)2.40 (5)3.222 (4)166 (5)
N3—H3A⋯Cl30.85 (2)2.25 (2)3.104 (3)173 (3)
N3—H3B⋯O2W0.86 (2)1.94 (2)2.782 (4)169 (2)
O2W—H3O⋯Cl3ii0.84 (2)2.30 (2)3.144 (3)176 (6)
O2W—H4O⋯Cl3iii0.84 (3)2.30 (3)3.133 (4)168 (4)

Symmetry codes: (i) ; (ii) ; (iii) .

  1 in total

1.  A systematic evaluation of molecular recognition phenomena. 1. Interaction between phosphates and nucleotides with hexaazamacrocyclic ligands containing m-xylylic spacers.

Authors:  C Anda; A Llobet; V Salvado; J Reibenspies; R J Motekaitis; A E Martell
Journal:  Inorg Chem       Date:  2000-07-10       Impact factor: 5.165

  1 in total
  3 in total

1.  A new hexaaminomacrocycle for ditopic binding of bromide.

Authors:  Don Gibson; Kalpana R Dey; Frank R Fronczek; Md Alamgir Hossain
Journal:  Tetrahedron Lett       Date:  2009-11-25       Impact factor: 2.415

2.  Charge-assisted encapsulation of two chlorides by a hexaprotonated azamacrocycle.

Authors:  Md Alamgir Hossain; Musabbir A Saeed; Frank R Fronczek; Bryan M Wong; Kalpana R Dey; John S Mendy; Don Gibson
Journal:  Cryst Growth Des       Date:  2010-03-17       Impact factor: 4.076

3.  3,6,9,16,19,22-Hexaazatricyclo-[22.2.2.2]triaconta-1(27),11 (30),-12,14(29),24(28),25-hexaene hexakis(p-toluenesulfonate) dihydrate.

Authors:  Musabbir A Saeed; Jameskia J Thompson; Frank R Fronczek; Md Alamgir Hossain
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-09-09
  3 in total

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