Literature DB >> 21200668

A triclinic modification of 5,5'-dinitro-2,2'-dithio-dipyridine.

Iván Brito, Aldo Mundaca, Alejandro Cárdenas, Matías López-Rodríguez.   

Abstract

The asymmetric unit of the title compound, C(10)H(6)N(4)O(4)S(2), contains two independent but similar mol-ecules. The structure is a triclinic polymorph of the monoclinic structure reported previously [Brito, Mundaca, Cárdenas, López-Rodríguez & Vargas (2007 ▶). Acta Cryst. E63, o3351-o3352]. The most obvious difference between the two polymorphs is the C-S-S-C torsion angle [-80.13 (16), -79.8 (2) and 0° for the two mol-ecules of the triclinic polymorph and the monoclinic polymorph, respectively]. The crystal structure of the title compound has two intra-molecular C-H⋯S inter-actions with average H⋯S distances of 2.69 Å, whereas this kind of inter-action is not evident in the monoclinic polymorph.

Entities:  

Year:  2007        PMID: 21200668      PMCID: PMC2915177          DOI: 10.1107/S1600536807062630

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Allen et al. (1987 ▶); Bernstein et al. (1995 ▶); Brito et al. (2007 ▶); Glidewell et al. (2000 ▶); Shefter (1970 ▶).

Experimental

Crystal data

C10H6N4O4S2 M = 310.31 Triclinic, a = 7.7832 (12) Å b = 11.8515 (11) Å c = 14.513 (2) Å α = 82.353 (4)° β = 82.095 (5)° γ = 72.460 (9)° V = 1258.4 (3) Å3 Z = 4 Mo Kα radiation μ = 0.44 mm−1 T = 298 (2) K 0.20 × 0.10 × 0.10 mm

Data collection

Nonius KappaCCD area-detector diffractometer Absorption correction: multi-scan (SORTAV; Blessing, 1995 ▶) T min = 0.937, T max = 0.948 11205 measured reflections 4931 independent reflections 4101 reflections with I > 2σ(I) R int = 0.062

Refinement

R[F 2 > 2σ(F 2)] = 0.088 wR(F 2) = 0.209 S = 1.16 4931 reflections 362 parameters H-atom parameters constrained Δρmax = 0.33 e Å−3 Δρmin = −0.28 e Å−3 Data collection: COLLECT (Nonius, 1998 ▶); cell refinement: DENZO-SMN (Otwinowski & Minor, 1997 ▶); data reduction: DENZO-SMN; program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2003 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536807062630/bt2643sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536807062630/bt2643Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H6N4O4S2Z = 4
Mr = 310.31F000 = 632
Triclinic, P1Dx = 1.638 Mg m3
Hall symbol: -P 1Melting point: 420 K
a = 7.7832 (12) ÅMo Kα radiation λ = 0.71073 Å
b = 11.8515 (11) ÅCell parameters from 11236 reflections
c = 14.513 (2) Åθ = 1.4–26.5º
α = 82.353 (4)ºµ = 0.44 mm1
β = 82.095 (5)ºT = 298 (2) K
γ = 72.460 (9)ºPrismatic, light yellow
V = 1258.4 (3) Å30.20 × 0.10 × 0.10 mm
Nonius KappaCCD area-detector diffractometer4101 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.062
Monochromator: graphiteθmax = 26.5º
φ scans, and ω scans with κ offsetsθmin = 1.4º
Absorption correction: multi-scan(SORTAV; Blessing, 1995)h = −9→9
Tmin = 0.937, Tmax = 0.948k = −12→14
11205 measured reflectionsl = −18→18
4931 independent reflections
Refinement on F2H-atom parameters constrained
Least-squares matrix: full  w = 1/[σ2(Fo2) + (0.0368P)2 + 1.5007P] where P = (Fo2 + 2Fc2)/3
R[F2 > 2σ(F2)] = 0.088(Δ/σ)max = 0.007
wR(F2) = 0.209Δρmax = 0.33 e Å3
S = 1.16Δρmin = −0.28 e Å3
4931 reflectionsExtinction correction: none
362 parameters
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S1−0.28532 (14)0.36598 (9)0.47963 (7)0.0648 (3)
S2−0.33244 (12)0.21846 (9)0.55311 (8)0.0597 (3)
S30.2159 (2)0.37139 (15)0.72593 (9)0.1008 (5)
S40.17109 (18)0.22078 (14)0.79400 (11)0.0932 (5)
O1−0.1425 (5)0.7608 (3)0.7099 (3)0.0932 (11)
O2−0.2430 (7)0.6621 (3)0.8270 (3)0.1114 (15)
O30.5190 (4)−0.0383 (3)0.6160 (3)0.1013 (14)
O40.4123 (4)−0.1761 (3)0.6849 (3)0.0830 (10)
O50.3423 (6)0.7628 (3)0.9636 (3)0.1124 (14)
O60.2541 (7)0.6562 (3)1.0807 (3)0.1078 (13)
O71.0125 (5)−0.0429 (5)0.8735 (4)0.143 (2)
O80.8920 (5)−0.1686 (3)0.9535 (3)0.0985 (12)
N1−0.2025 (5)0.6797 (3)0.7443 (3)0.0695 (10)
N2−0.2166 (5)0.5481 (3)0.5290 (3)0.0675 (9)
N30.0258 (4)0.1755 (2)0.5594 (2)0.0485 (7)
N40.3948 (4)−0.0788 (3)0.6427 (2)0.0562 (8)
N50.2906 (5)0.6772 (3)0.9981 (3)0.0765 (11)
N60.2519 (6)0.5608 (4)0.7817 (3)0.0945 (15)
N70.5273 (5)0.1785 (3)0.8105 (3)0.0725 (10)
N80.8822 (6)−0.0777 (4)0.9035 (3)0.0798 (11)
C1−0.2263 (5)0.5991 (3)0.6821 (3)0.0536 (9)
C2−0.2820 (6)0.5018 (3)0.7196 (3)0.0607 (10)
H2−0.30620.48770.7840.073*
C3−0.3013 (5)0.4261 (3)0.6612 (3)0.0570 (9)
H3−0.33660.35860.68460.078 (6)*
C4−0.2670 (4)0.4527 (3)0.5671 (3)0.0521 (9)
C5−0.1959 (5)0.6208 (3)0.5874 (3)0.0632 (11)
H5−0.15980.68760.56270.078 (6)*
C6−0.1129 (4)0.1300 (3)0.5804 (2)0.0448 (7)
C7−0.0971 (5)0.0159 (3)0.6229 (3)0.0503 (8)
H7−0.1982−0.01210.63660.078 (6)*
C80.0692 (5)−0.0546 (3)0.6443 (3)0.0483 (8)
H80.0851−0.13160.67280.058*
C90.2126 (4)−0.0072 (3)0.6222 (2)0.0425 (7)
C100.1881 (5)0.1059 (3)0.5803 (3)0.0505 (8)
H100.28770.13530.56580.061*
C110.2288 (6)0.4547 (4)0.8158 (3)0.0728 (13)
C120.2218 (6)0.4174 (4)0.9095 (3)0.0706 (12)
H120.20540.34360.93130.078 (6)*
C130.2395 (6)0.4909 (4)0.9697 (3)0.0691 (11)
H130.23420.46851.03370.083*
C140.2653 (6)0.5984 (4)0.9348 (3)0.0680 (11)
C150.2697 (7)0.6302 (5)0.8413 (4)0.0888 (16)
H150.2860.70380.81840.107*
C160.3897 (6)0.1317 (4)0.8230 (3)0.0690 (11)
C170.4031 (6)0.0156 (4)0.8614 (4)0.0771 (13)
H170.3032−0.01360.86880.078 (6)*
C180.5647 (6)−0.0536 (4)0.8877 (3)0.0708 (11)
H180.5788−0.13150.91370.085*
C190.7070 (5)−0.0059 (3)0.8749 (3)0.0586 (9)
C200.6845 (6)0.1087 (4)0.8371 (3)0.0686 (11)
H200.78310.13920.82980.082*
U11U22U33U12U13U23
S10.0590 (6)0.0586 (6)0.0625 (6)0.0052 (5)−0.0153 (5)0.0013 (5)
S20.0394 (5)0.0547 (6)0.0817 (7)−0.0040 (4)−0.0121 (4)−0.0117 (5)
S30.0942 (10)0.1143 (11)0.0657 (8)0.0208 (8)−0.0239 (7)−0.0129 (7)
S40.0649 (8)0.1047 (10)0.1078 (11)−0.0014 (7)−0.0275 (7)−0.0382 (8)
O10.090 (2)0.0562 (18)0.140 (3)−0.0325 (17)−0.023 (2)0.0072 (19)
O20.192 (5)0.070 (2)0.087 (3)−0.056 (3)−0.024 (3)−0.0074 (19)
O30.0428 (16)0.090 (2)0.167 (4)−0.0267 (16)−0.0314 (19)0.040 (2)
O40.0621 (18)0.0593 (18)0.115 (3)−0.0056 (14)−0.0246 (17)0.0246 (18)
O50.114 (3)0.083 (2)0.153 (4)−0.057 (2)−0.017 (3)0.014 (2)
O60.157 (4)0.080 (2)0.092 (3)−0.044 (3)−0.017 (3)−0.001 (2)
O70.064 (2)0.148 (4)0.205 (5)−0.039 (3)−0.031 (3)0.056 (4)
O80.097 (3)0.074 (2)0.113 (3)−0.0104 (19)−0.024 (2)0.013 (2)
N10.069 (2)0.0378 (17)0.103 (3)−0.0172 (15)−0.021 (2)0.0058 (18)
N20.060 (2)0.057 (2)0.071 (2)−0.0063 (16)−0.0025 (17)0.0161 (17)
N30.0421 (15)0.0390 (14)0.0646 (18)−0.0129 (12)−0.0090 (13)0.0010 (13)
N40.0443 (17)0.0510 (18)0.072 (2)−0.0121 (14)−0.0162 (14)0.0044 (15)
N50.071 (2)0.057 (2)0.097 (3)−0.0150 (18)−0.014 (2)0.005 (2)
N60.095 (3)0.092 (3)0.064 (2)0.003 (2)−0.002 (2)0.027 (2)
N70.072 (2)0.065 (2)0.076 (2)−0.0121 (18)−0.0121 (19)−0.0057 (18)
N80.073 (3)0.070 (2)0.091 (3)−0.016 (2)−0.009 (2)0.003 (2)
C10.0452 (19)0.0357 (17)0.075 (3)−0.0060 (14)−0.0102 (17)0.0040 (16)
C20.074 (3)0.0427 (19)0.063 (2)−0.0202 (18)0.0015 (19)0.0056 (17)
C30.067 (2)0.0396 (18)0.063 (2)−0.0177 (17)−0.0033 (18)0.0037 (16)
C40.0350 (17)0.0418 (18)0.068 (2)0.0017 (14)−0.0067 (15)0.0060 (16)
C50.054 (2)0.045 (2)0.084 (3)−0.0157 (17)−0.007 (2)0.019 (2)
C60.0363 (16)0.0450 (18)0.0523 (19)−0.0070 (13)−0.0070 (14)−0.0104 (14)
C70.0410 (18)0.0476 (19)0.065 (2)−0.0199 (15)−0.0026 (15)−0.0033 (16)
C80.0481 (19)0.0377 (17)0.059 (2)−0.0153 (14)−0.0053 (15)0.0011 (15)
C90.0374 (16)0.0399 (16)0.0516 (18)−0.0112 (13)−0.0096 (14)−0.0039 (14)
C100.0406 (18)0.0445 (18)0.070 (2)−0.0198 (15)−0.0090 (16)0.0027 (16)
C110.057 (2)0.077 (3)0.061 (2)0.011 (2)−0.0061 (19)0.003 (2)
C120.082 (3)0.061 (3)0.060 (3)−0.015 (2)−0.001 (2)0.005 (2)
C130.073 (3)0.061 (2)0.063 (3)−0.013 (2)−0.003 (2)0.009 (2)
C140.055 (2)0.061 (2)0.075 (3)−0.0069 (19)−0.003 (2)0.011 (2)
C150.091 (4)0.072 (3)0.081 (3)−0.005 (3)0.001 (3)0.021 (3)
C160.063 (3)0.075 (3)0.068 (3)−0.009 (2)−0.006 (2)−0.029 (2)
C170.061 (3)0.083 (3)0.096 (3)−0.030 (2)−0.001 (2)−0.029 (3)
C180.072 (3)0.059 (2)0.084 (3)−0.023 (2)−0.002 (2)−0.014 (2)
C190.057 (2)0.059 (2)0.059 (2)−0.0137 (18)−0.0014 (18)−0.0117 (18)
C200.062 (3)0.061 (2)0.082 (3)−0.018 (2)−0.004 (2)−0.005 (2)
S1—C41.781 (4)C1—C21.372 (5)
S1—S22.0275 (15)C2—C31.367 (6)
S2—C61.781 (3)C2—H20.93
S3—C111.768 (5)C3—C41.368 (5)
S3—S42.023 (2)C3—H30.93
S4—C161.784 (5)C5—H50.93
O1—N11.213 (4)C6—C71.387 (5)
O2—N11.205 (5)C7—C81.363 (5)
O3—N41.200 (4)C7—H70.93
O4—N41.211 (4)C8—C91.376 (4)
O5—N51.223 (5)C8—H80.93
O6—N51.204 (5)C9—C101.366 (4)
O7—N81.213 (5)C10—H100.93
O8—N81.204 (5)C11—C121.371 (6)
N1—C11.464 (6)C12—C131.360 (6)
N2—C41.334 (5)C12—H120.93
N2—C51.342 (6)C13—C141.369 (6)
N3—C61.329 (4)C13—H130.93
N3—C101.333 (4)C14—C151.358 (7)
N4—C91.464 (4)C15—H150.93
N5—C141.463 (6)C16—C171.393 (6)
N6—C151.317 (8)C17—C181.351 (6)
N6—C111.343 (6)C17—H170.93
N7—C201.329 (6)C18—C191.369 (6)
N7—C161.329 (6)C18—H180.93
N8—C191.455 (6)C19—C201.365 (5)
C1—C51.365 (6)C20—H200.93
C4—S1—S2104.06 (13)C6—C7—H7120.6
C6—S2—S1103.36 (12)C7—C8—C9117.4 (3)
C11—S3—S4104.51 (17)C7—C8—H8121.3
C16—S4—S3104.02 (18)C9—C8—H8121.3
O2—N1—O1123.3 (4)C10—C9—C8120.9 (3)
O2—N1—C1118.6 (3)C10—C9—N4119.0 (3)
O1—N1—C1118.2 (4)C8—C9—N4120.0 (3)
C4—N2—C5117.4 (3)N3—C10—C9122.0 (3)
C6—N3—C10117.2 (3)N3—C10—H10119
O3—N4—O4123.5 (3)C9—C10—H10119
O3—N4—C9118.3 (3)N6—C11—C12122.5 (5)
O4—N4—C9118.1 (3)N6—C11—S3111.9 (4)
O6—N5—O5123.8 (5)C12—C11—S3125.6 (4)
O6—N5—C14118.2 (4)C13—C12—C11118.5 (4)
O5—N5—C14117.9 (4)C13—C12—H12120.8
C15—N6—C11118.0 (4)C11—C12—H12120.8
C20—N7—C16116.7 (4)C12—C13—C14119.0 (4)
O8—N8—O7123.4 (5)C12—C13—H13120.5
O8—N8—C19119.3 (4)C14—C13—H13120.5
O7—N8—C19117.3 (4)C15—C14—C13119.5 (5)
C5—C1—C2119.9 (4)C15—C14—N5120.6 (5)
C5—C1—N1120.7 (3)C13—C14—N5119.9 (4)
C2—C1—N1119.4 (4)N6—C15—C14122.5 (5)
C3—C2—C1119.1 (4)N6—C15—H15118.7
C3—C2—H2120.5C14—C15—H15118.7
C1—C2—H2120.5N7—C16—C17123.7 (4)
C2—C3—C4117.8 (3)N7—C16—S4119.9 (4)
C2—C3—H3121.1C17—C16—S4116.5 (4)
C4—C3—H3121.1C18—C17—C16118.5 (4)
N2—C4—C3124.1 (4)C18—C17—H17120.8
N2—C4—S1111.2 (3)C16—C17—H17120.8
C3—C4—S1124.7 (3)C17—C18—C19118.2 (4)
N2—C5—C1121.7 (3)C17—C18—H18120.9
N2—C5—H5119.2C19—C18—H18120.9
C1—C5—H5119.2C20—C19—C18120.4 (4)
N3—C6—C7123.6 (3)C20—C19—N8120.0 (4)
N3—C6—S2119.2 (3)C18—C19—N8119.5 (4)
C7—C6—S2117.3 (2)N7—C20—C19122.6 (4)
C8—C7—C6118.8 (3)N7—C20—H20118.7
C8—C7—H7120.6C19—C20—H20118.7
C4—S1—S2—C6−80.13 (16)N4—C9—C10—N3179.7 (3)
C11—S3—S4—C16−79.8 (2)C15—N6—C11—C120.5 (7)
O2—N1—C1—C5174.8 (4)C15—N6—C11—S3−177.8 (4)
O1—N1—C1—C5−5.3 (5)S4—S3—C11—N6−177.7 (3)
O2—N1—C1—C2−4.4 (6)S4—S3—C11—C124.1 (4)
O1—N1—C1—C2175.5 (4)N6—C11—C12—C13−0.2 (7)
C5—C1—C2—C31.8 (6)S3—C11—C12—C13177.9 (4)
N1—C1—C2—C3−179.0 (4)C11—C12—C13—C14−0.6 (7)
C1—C2—C3—C4−1.2 (6)C12—C13—C14—C151.1 (7)
C5—N2—C4—C31.1 (5)C12—C13—C14—N5−178.0 (4)
C5—N2—C4—S1−179.4 (3)O6—N5—C14—C15167.0 (5)
C2—C3—C4—N2−0.2 (6)O5—N5—C14—C15−10.7 (7)
C2—C3—C4—S1−179.7 (3)O6—N5—C14—C13−13.9 (6)
S2—S1—C4—N2173.4 (2)O5—N5—C14—C13168.3 (4)
S2—S1—C4—C3−7.1 (3)C11—N6—C15—C14−0.1 (8)
C4—N2—C5—C1−0.5 (6)C13—C14—C15—N6−0.7 (8)
C2—C1—C5—N2−0.9 (6)N5—C14—C15—N6178.4 (5)
N1—C1—C5—N2179.9 (3)C20—N7—C16—C17−0.3 (7)
C10—N3—C6—C70.6 (5)C20—N7—C16—S4177.3 (3)
C10—N3—C6—S2−179.4 (3)S3—S4—C16—N79.5 (4)
S1—S2—C6—N36.6 (3)S3—S4—C16—C17−172.8 (3)
S1—S2—C6—C7−173.5 (3)N7—C16—C17—C180.1 (7)
N3—C6—C7—C8−0.4 (6)S4—C16—C17—C18−177.6 (4)
S2—C6—C7—C8179.6 (3)C16—C17—C18—C19−0.1 (7)
C6—C7—C8—C90.1 (5)C17—C18—C19—C200.4 (7)
C7—C8—C9—C10−0.1 (5)C17—C18—C19—N8179.2 (4)
C7—C8—C9—N4−179.5 (3)O8—N8—C19—C20164.9 (4)
O3—N4—C9—C10−5.0 (6)O7—N8—C19—C20−16.6 (7)
O4—N4—C9—C10175.6 (4)O8—N8—C19—C18−14.0 (7)
O3—N4—C9—C8174.3 (4)O7—N8—C19—C18164.5 (5)
O4—N4—C9—C8−5.0 (5)C16—N7—C20—C190.5 (7)
C6—N3—C10—C9−0.6 (5)C18—C19—C20—N7−0.6 (7)
C8—C9—C10—N30.4 (6)N8—C19—C20—N7−179.5 (4)
D—H···AD—HH···AD···AD—H···A
C3—H3···S20.932.683.173 (4)114
C8—H8···O1i0.932.443.098 (5)127
C12—H12···S40.932.703.189 (5)113
C18—H18···O5i0.932.503.171 (6)129
Table 1

Selected torsion angles (°)

C4—S1—S2—C6−80.13 (16)
C11—S3—S4—C16−79.8 (2)
S2—S1—C4—N2173.4 (2)
S2—S1—C4—C3−7.1 (3)
S1—S2—C6—N36.6 (3)
S1—S2—C6—C7−173.5 (3)
S4—S3—C11—N6−177.7 (3)
S4—S3—C11—C124.1 (4)
S3—S4—C16—N79.5 (4)
S3—S4—C16—C17−172.8 (3)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C3—H3⋯S20.932.683.173 (4)114
C8—H8⋯O1i0.932.443.098 (5)127
C12—H12⋯S40.932.703.189 (5)113
C18—H18⋯O5i0.932.503.171 (6)129

Symmetry code: (i) .

  3 in total

1.  SHELXL: high-resolution refinement.

Authors:  G M Sheldrick; T R Schneider
Journal:  Methods Enzymol       Date:  1997       Impact factor: 1.600

2.  An empirical correction for absorption anisotropy.

Authors:  R H Blessing
Journal:  Acta Crystallogr A       Date:  1995-01-01       Impact factor: 2.290

3.  Conformational preferences and supramolecular aggregation in 2-nitrophenylthiolates: disulfides and thiosulfonates.

Authors:  C Glidewell; J N Low; J L Wardell
Journal:  Acta Crystallogr B       Date:  2000-10-01
  3 in total

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