Literature DB >> 21200656

Bis(2-amino-pyridine-κN)bis-(benzoato-κO)cobalt(II).

Di-Chang Zhong, Gui-Quan Guo, Xiao-Hua Zuo, Ji-Hua Deng, Lin Yuan, Rong-Hua Zhu.   

Abstract

In the title compound, [Co(C(7)H(5)O(2))(2)(C(5)H(6)N(2))(2)], the Co(II) atom is hexa-coordinated by four O atoms from two benzoate anions, and two N atoms from two 2-amino-pyridine mol-ecules, resulting in a distorted octa-hedral geometry. Both benzoate anions act as bidentate ligands and both 2-amino-pyridine mol-ecules are coordinated to the metal through their pyridyl N atoms. The crystal packing is stabilized by inter-molecular N-H⋯O hydrogen bonds, C-H⋯π, and π-π stacking inter-actions involving benzoate anions and 2-amino-pyridine mol-ecules.

Entities:  

Year:  2007        PMID: 21200656      PMCID: PMC2947776          DOI: 10.1107/S1600536807063933

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Benbellat et al. (2006 ▶); Brechin et al. (2000 ▶); Dirnitrou et al. (1995 ▶); Kozlevčar et al. (2001 ▶); Zhu, Shao et al. (2003 ▶); Zhu, Usman et al. (2003 ▶).

Experimental

Crystal data

[Co(C7H5O2)2(C5H6N2)2] M = 489.39 Monoclinic, a = 9.0230 (9) Å b = 11.3787 (12) Å c = 22.451 (2) Å β = 96.7650 (10)° V = 2288.9 (4) Å3 Z = 4 Mo Kα radiation μ = 0.79 mm−1 T = 296 (2) K 0.36 × 0.28 × 0.22 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.770, T max = 0.835 19674 measured reflections 5288 independent reflections 4198 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.092 S = 1.05 5288 reflections 298 parameters 357 restraints H-atom parameters constrained Δρmax = 0.32 e Å−3 Δρmin = −0.27 e Å−3 Data collection: SMART (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997a ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997a ▶); molecular graphics: SHELXTL (Sheldrick, 1997b ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536807063933/kp2149sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536807063933/kp2149Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Co(C7H5O2)2(C5H6N2)2]F000 = 1012
Mr = 489.39Dx = 1.420 Mg m3
Monoclinic, P21/nMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 7256 reflections
a = 9.0230 (9) Åθ = 2.4–27.2º
b = 11.3787 (12) ŵ = 0.79 mm1
c = 22.451 (2) ÅT = 296 (2) K
β = 96.7650 (10)ºBlock, purple
V = 2288.9 (4) Å30.36 × 0.28 × 0.22 mm
Z = 4
Bruker APEXII CCD area-detector diffractometer5288 independent reflections
Radiation source: fine-focus sealed tube4198 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.027
T = 296(2) Kθmax = 27.7º
phi and ω scansθmin = 1.8º
Absorption correction: multi-scan(SADABS; Sheldrick, 1996)h = −11→11
Tmin = 0.770, Tmax = 0.835k = −14→14
19674 measured reflectionsl = −29→25
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.034H-atom parameters constrained
wR(F2) = 0.092  w = 1/[σ2(Fo2) + (0.0416P)2 + 0.6259P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max = 0.050
5288 reflectionsΔρmax = 0.32 e Å3
298 parametersΔρmin = −0.27 e Å3
357 restraintsExtinction correction: none
Primary atom site location: structure-invariant direct methods
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Co10.29899 (3)0.42895 (2)0.123207 (11)0.04251 (10)
N10.37446 (18)0.31734 (14)0.05834 (7)0.0434 (4)
N20.3314 (2)0.44408 (15)−0.02241 (8)0.0520 (4)
H2A0.27730.4869−0.00190.062*
H2B0.34390.4640−0.05840.062*
N30.11106 (18)0.33308 (14)0.14242 (7)0.0429 (4)
N40.2282 (2)0.2407 (2)0.22706 (9)0.0745 (6)
H4A0.31080.27360.22080.089*
H4B0.22540.19490.25740.089*
O10.1750 (2)0.55468 (13)0.06636 (7)0.0651 (5)
O20.2427 (2)0.60479 (15)0.15868 (8)0.0698 (5)
O30.54634 (19)0.51020 (15)0.13357 (6)0.0602 (4)
O40.45109 (17)0.39318 (15)0.19532 (6)0.0566 (4)
C10.5594 (2)0.45573 (18)0.18175 (9)0.0444 (4)
C20.6981 (2)0.4610 (2)0.22510 (10)0.0504 (5)
C30.7083 (3)0.3990 (3)0.27797 (11)0.0690 (7)
H30.62840.35390.28750.083*
C40.8401 (4)0.4045 (3)0.31715 (15)0.0957 (10)
H40.84830.36370.35330.115*
C50.9565 (4)0.4697 (4)0.30237 (19)0.1039 (11)
H51.04460.47160.32840.125*
C60.9476 (3)0.5316 (4)0.2510 (2)0.1015 (11)
H61.02830.57650.24210.122*
C70.8173 (3)0.5283 (3)0.21134 (14)0.0760 (7)
H70.81020.57100.17580.091*
C80.1784 (2)0.62950 (18)0.10788 (10)0.0520 (5)
C90.1044 (2)0.74580 (18)0.09538 (10)0.0499 (5)
C100.1555 (3)0.8438 (2)0.12792 (12)0.0667 (6)
H100.23640.83730.15750.080*
C110.0872 (4)0.9512 (2)0.11675 (15)0.0842 (8)
H110.12361.01730.13810.101*
C12−0.0346 (4)0.9607 (3)0.07410 (16)0.0886 (9)
H12−0.08131.03310.06700.106*
C13−0.0872 (4)0.8644 (3)0.04219 (15)0.0880 (8)
H13−0.17060.87090.01380.106*
C14−0.0171 (3)0.7572 (2)0.05190 (12)0.0696 (7)
H14−0.05150.69230.02920.084*
C15−0.0147 (2)0.3464 (2)0.10357 (10)0.0529 (5)
H15−0.01060.39560.07070.063*
C16−0.1465 (3)0.2924 (2)0.10970 (12)0.0634 (6)
H16−0.22950.30330.08150.076*
C17−0.1537 (3)0.2207 (2)0.15906 (12)0.0643 (6)
H17−0.24260.18340.16480.077*
C18−0.0309 (3)0.2052 (2)0.19887 (11)0.0594 (6)
H18−0.03530.15780.23240.071*
C190.1036 (2)0.26105 (18)0.18948 (9)0.0479 (5)
C200.3961 (2)0.34636 (17)0.00178 (8)0.0426 (4)
C210.4848 (3)0.27532 (19)−0.03144 (10)0.0532 (5)
H210.50280.2980−0.06970.064*
C220.5438 (3)0.1739 (2)−0.00744 (11)0.0610 (6)
H220.60250.1268−0.02910.073*
C230.5157 (3)0.1407 (2)0.05002 (11)0.0614 (6)
H230.55250.07040.06690.074*
C240.4331 (3)0.21426 (19)0.08048 (10)0.0548 (5)
H240.41560.19260.11900.066*
U11U22U33U12U13U23
Co10.04193 (16)0.05067 (17)0.03496 (15)−0.00377 (11)0.00463 (10)0.00284 (11)
N10.0453 (9)0.0461 (9)0.0388 (8)−0.0058 (7)0.0051 (7)0.0010 (7)
N20.0644 (11)0.0542 (10)0.0393 (9)0.0026 (8)0.0141 (8)0.0041 (7)
N30.0430 (9)0.0459 (9)0.0404 (8)−0.0037 (7)0.0080 (7)−0.0016 (7)
N40.0630 (13)0.0910 (16)0.0676 (13)−0.0130 (11)0.0000 (10)0.0383 (12)
O10.0964 (13)0.0450 (8)0.0594 (10)−0.0035 (8)0.0324 (9)−0.0087 (7)
O20.0713 (11)0.0598 (10)0.0745 (11)0.0096 (8)−0.0071 (9)−0.0133 (9)
O30.0701 (10)0.0665 (10)0.0455 (8)−0.0001 (8)0.0132 (7)0.0081 (7)
O40.0462 (8)0.0740 (10)0.0483 (8)−0.0136 (7)0.0003 (6)0.0080 (7)
C10.0448 (11)0.0493 (10)0.0399 (10)0.0008 (8)0.0088 (8)−0.0041 (8)
C20.0403 (10)0.0578 (12)0.0537 (12)0.0024 (9)0.0082 (9)−0.0181 (10)
C30.0601 (14)0.0847 (16)0.0591 (14)0.0156 (12)−0.0058 (11)−0.0075 (12)
C40.083 (2)0.119 (2)0.0781 (18)0.0320 (18)−0.0214 (16)−0.0218 (17)
C50.0558 (17)0.136 (3)0.113 (2)0.0282 (18)−0.0207 (17)−0.062 (2)
C60.0519 (15)0.125 (2)0.128 (3)−0.0153 (16)0.0137 (17)−0.060 (2)
C70.0550 (14)0.0890 (17)0.0862 (17)−0.0142 (13)0.0174 (13)−0.0327 (15)
C80.0520 (12)0.0452 (11)0.0625 (13)−0.0078 (9)0.0225 (10)−0.0096 (10)
C90.0507 (12)0.0462 (10)0.0556 (12)−0.0041 (9)0.0179 (9)−0.0073 (9)
C100.0746 (16)0.0515 (12)0.0732 (15)−0.0025 (11)0.0052 (12)−0.0129 (11)
C110.108 (2)0.0492 (13)0.097 (2)0.0020 (14)0.0172 (18)−0.0177 (13)
C120.098 (2)0.0639 (16)0.106 (2)0.0221 (15)0.0193 (18)0.0063 (16)
C130.0807 (19)0.0802 (19)0.100 (2)0.0087 (15)−0.0046 (16)0.0101 (16)
C140.0707 (16)0.0606 (14)0.0754 (16)−0.0063 (12)−0.0003 (13)−0.0067 (12)
C150.0504 (12)0.0540 (12)0.0530 (12)−0.0063 (9)0.0013 (9)0.0007 (10)
C160.0467 (12)0.0608 (13)0.0809 (16)−0.0081 (10)−0.0001 (11)−0.0041 (12)
C170.0498 (13)0.0555 (13)0.0900 (17)−0.0121 (10)0.0191 (12)−0.0067 (12)
C180.0655 (14)0.0483 (11)0.0686 (14)−0.0083 (10)0.0257 (12)0.0039 (10)
C190.0511 (11)0.0451 (10)0.0495 (11)−0.0017 (9)0.0146 (9)−0.0001 (9)
C200.0412 (10)0.0454 (10)0.0412 (9)−0.0104 (8)0.0050 (8)−0.0040 (8)
C210.0579 (13)0.0544 (12)0.0493 (11)−0.0079 (10)0.0151 (9)−0.0079 (9)
C220.0602 (14)0.0558 (13)0.0685 (14)−0.0024 (10)0.0141 (11)−0.0156 (11)
C230.0654 (14)0.0489 (12)0.0683 (14)0.0016 (10)0.0015 (11)−0.0004 (11)
C240.0614 (13)0.0525 (12)0.0503 (12)−0.0043 (10)0.0058 (10)0.0039 (10)
Co1—O42.0364 (15)C6—H60.9300
Co1—N32.1033 (16)C7—H70.9300
Co1—N12.1050 (16)C8—C91.494 (3)
Co1—O12.1426 (18)C9—C101.383 (3)
Co1—O22.2340 (17)C9—C141.386 (3)
Co1—O32.4016 (17)C10—C111.378 (4)
N1—C201.348 (2)C10—H100.9300
N1—C241.357 (3)C11—C121.374 (4)
N2—C201.341 (3)C11—H110.9300
N2—H2A0.8600C12—C131.364 (5)
N2—H2B0.8600C12—H120.9300
N3—C191.345 (3)C13—C141.379 (4)
N3—C151.356 (3)C13—H130.9300
N4—C191.344 (3)C14—H140.9300
N4—H4A0.8600C15—C161.360 (3)
N4—H4B0.8600C15—H150.9300
O1—C81.260 (3)C16—C171.384 (4)
O2—C81.249 (3)C16—H160.9300
O3—C11.240 (2)C17—C181.350 (4)
O4—C11.274 (2)C17—H170.9300
C1—C21.493 (3)C18—C191.408 (3)
C2—C31.375 (3)C18—H180.9300
C2—C71.385 (3)C20—C211.411 (3)
C3—C41.395 (4)C21—C221.355 (3)
C3—H30.9300C21—H210.9300
C4—C51.359 (6)C22—C231.396 (3)
C4—H40.9300C22—H220.9300
C5—C61.345 (5)C23—C241.358 (3)
C5—H50.9300C23—H230.9300
C6—C71.389 (4)C24—H240.9300
O4—Co1—N3102.55 (6)O2—C8—O1119.5 (2)
O4—Co1—N1100.77 (7)O2—C8—C9121.34 (19)
N3—Co1—N199.40 (6)O1—C8—C9119.2 (2)
O4—Co1—O1149.63 (7)C10—C9—C14118.9 (2)
N3—Co1—O195.25 (7)C10—C9—C8120.1 (2)
N1—Co1—O1100.34 (6)C14—C9—C8121.0 (2)
O4—Co1—O293.20 (7)C11—C10—C9120.3 (3)
N3—Co1—O299.72 (7)C11—C10—H10119.8
N1—Co1—O2153.21 (7)C9—C10—H10119.8
O1—Co1—O259.31 (6)C12—C11—C10120.1 (3)
O4—Co1—O357.88 (5)C12—C11—H11120.0
N3—Co1—O3160.43 (6)C10—C11—H11120.0
N1—Co1—O385.79 (6)C13—C12—C11120.2 (3)
O1—Co1—O3102.40 (6)C13—C12—H12119.9
O2—Co1—O382.44 (6)C11—C12—H12119.9
C20—N1—C24117.60 (18)C12—C13—C14120.2 (3)
C20—N1—Co1126.75 (13)C12—C13—H13119.9
C24—N1—Co1114.33 (13)C14—C13—H13119.9
C20—N2—H2A120.0C13—C14—C9120.3 (3)
C20—N2—H2B120.0C13—C14—H14119.8
H2A—N2—H2B120.0C9—C14—H14119.8
C19—N3—C15117.26 (17)N3—C15—C16124.0 (2)
C19—N3—Co1126.38 (14)N3—C15—H15118.0
C15—N3—Co1116.35 (13)C16—C15—H15118.0
C19—N4—H4A120.0C15—C16—C17118.2 (2)
C19—N4—H4B120.0C15—C16—H16120.9
H4A—N4—H4B120.0C17—C16—H16120.9
C8—O1—Co192.57 (15)C18—C17—C16119.7 (2)
C8—O2—Co188.66 (13)C18—C17—H17120.2
C1—O3—Co183.32 (13)C16—C17—H17120.2
C1—O4—Co199.33 (12)C17—C18—C19119.8 (2)
O3—C1—O4119.41 (19)C17—C18—H18120.1
O3—C1—C2122.31 (19)C19—C18—H18120.1
O4—C1—C2118.28 (18)N4—C19—N3118.84 (18)
C3—C2—C7120.1 (2)N4—C19—C18120.1 (2)
C3—C2—C1120.5 (2)N3—C19—C18121.1 (2)
C7—C2—C1119.4 (2)N2—C20—N1118.69 (18)
C2—C3—C4119.1 (3)N2—C20—C21120.54 (18)
C2—C3—H3120.4N1—C20—C21120.77 (19)
C4—C3—H3120.4C22—C21—C20119.9 (2)
C5—C4—C3119.8 (4)C22—C21—H21120.1
C5—C4—H4120.1C20—C21—H21120.1
C3—C4—H4120.1C21—C22—C23119.5 (2)
C4—C5—C6121.7 (3)C21—C22—H22120.3
C4—C5—H5119.1C23—C22—H22120.3
C6—C5—H5119.2C24—C23—C22118.0 (2)
C5—C6—C7119.7 (3)C24—C23—H23121.0
C5—C6—H6120.1C22—C23—H23121.0
C7—C6—H6120.1C23—C24—N1124.2 (2)
C2—C7—C6119.5 (3)C23—C24—H24117.9
C2—C7—H7120.2N1—C24—H24117.9
C6—C7—H7120.2
D—H···AD—HH···AD···AD—H···A
N2—H2A···O10.862.032.866 (2)163
N2—H2B···O3i0.862.072.891 (2)158
N4—H4A···O40.861.992.810 (2)160
N4—H4B···O2ii0.862.142.980 (2)167
C—H···CgaH···CgC···CgγbC—H···Cg
C13—H13···Cg(N1→C24)iii2.953.719 (3)6.07141
π–π contactsCg···Cgαa(βbCg···Plane
Cg(N3→C19)···Cg(C2→C7)iv3.7145 (16)6.3016.023.535
Cg(C2→C7)···Cg(N3→C19)v3.7145 (16)6.3017.873.570
Co1—O42.0364 (15)
Co1—N32.1033 (16)
Co1—N12.1050 (16)
Co1—O12.1426 (18)
Co1—O22.2340 (17)
Co1—O32.4016 (17)
O4—Co1—N3102.55 (6)
O4—Co1—N1100.77 (7)
N3—Co1—N199.40 (6)
N3—Co1—O195.25 (7)
N1—Co1—O1100.34 (6)
O4—Co1—O293.20 (7)
N3—Co1—O299.72 (7)
N1—Co1—O2153.21 (7)
O1—Co1—O259.31 (6)
O4—Co1—O357.88 (5)
N3—Co1—O3160.43 (6)
N1—Co1—O385.79 (6)
O1—Co1—O3102.40 (6)
O2—Co1—O382.44 (6)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2A⋯O10.862.032.866 (2)163
N2—H2B⋯O3i0.862.072.891 (2)158
N4—H4A⋯O40.861.992.810 (2)160
N4—H4B⋯O2ii0.862.142.980 (2)167
C13—H13⋯Cg1iii0.932.953.719 (3)141

Symmetry codes: (i) ; (ii) ; (iii) −x, 1 − y, −z. Cg1 is the centroid of the N1/C20–C24 ring.

Table 3

π–π Interactions (Å, °)

π–π ContactsCgCgαaβbCg⋯Plane
Cg(N3→C19)⋯Cg(C2→C7)iv3.7145 (16)6.316.03.535
Cg(C2→C7)⋯Cg(N3→C19)v3.7145 (16)6.317.93.570

Notes: αa = angle between planes of two aromatic rings. βb = angle between Cg⋯Cg line and normal to the plane of the first aromatic ring. Symmetry codes: (iv) −1 + x, y, z; (v) 1 + x, y, z.

  2 in total

1.  Bis(2-aminopyridine-kappaN(1))(benzoato-kappaO)silver(I).

Authors:  Hai-Liang Zhu; Anwar Usman; Hoong-Kun Fun; Xian-Jiang Wang
Journal:  Acta Crystallogr C       Date:  2003-05-20       Impact factor: 1.172

2.  Co(II)-Co(II) paddlewheel complex with a redox-active ligand derived from TTF.

Authors:  Noura Benbellat; Konstantin S Gavrilenko; Yann Le Gal; Olivier Cador; Stéphane Golhen; Abdelkrim Gouasmia; Jean-Marc Fabre; Lahcène Ouahab
Journal:  Inorg Chem       Date:  2006-12-25       Impact factor: 5.165

  2 in total
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1.  Tetra-μ-benzoato-κO:O'-bis-[(benzoic acid-κO)nickel(II)].

Authors:  Ji-Hua Deng; Yan-Ping Yi; Zhi-Xing Xiong; Lin Yuan; Guang-Quan Mei
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-31

2.  Structural Insights into Influence of Isomerism on Properties of Open Shell Cobalt Coordination System.

Authors:  Marcin Swiatkowski; Tomasz Sieranski; Marta Bogdan; Rafal Kruszynski
Journal:  Molecules       Date:  2019-09-16       Impact factor: 4.411

  2 in total

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