Literature DB >> 21200644

Diazido-bis(2,2'-biimidazole)cobalt(II).

Sheng Li, Shou-Bin Wang, Fu-Li Zhang, Kun Tang.   

Abstract

In the title compound, [Co(N(3))(2)(C(6)H(6)N(4))(2)], the Co(II) atom lies on a centre of inversion and is bonded to two azide ions and two bidentate 2,2'-biimidizole ligands, giving a slightly distorted octa-hedral CoN(6) coordination geometry. In the crystal structure, inter-molecular N-H⋯N hydrogen bonds exist between the 2,2'-biimidizole ligands and the azide ions, linking the complexes into sheets.

Entities:  

Year:  2007        PMID: 21200644      PMCID: PMC2914954          DOI: 10.1107/S1600536807062873

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Rees et al. (1983 ▶); Hardman & Lipscomb (1984 ▶); Kuo & Makinen (1982 ▶); Dworschak & Plapp (1977 ▶).

Experimental

Crystal data

[Co(N3)2(C6H6N4)2] M = 411.29 Monoclinic, a = 12.8085 (10) Å b = 8.7632 (5) Å c = 14.4793 (5) Å β = 91.913 (1)° V = 1624.30 (17) Å3 Z = 4 Mo Kα radiation μ = 1.09 mm−1 T = 293 (2) K 0.28 × 0.22 × 0.20 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.750, T max = 0.811 1961 measured reflections 1501 independent reflections 1246 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.029 wR(F 2) = 0.078 S = 1.00 1501 reflections 124 parameters H-atom parameters constrained Δρmax = 0.24 e Å−3 Δρmin = −0.21 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT-Plus (Bruker, 2001 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997 ▶); molecular graphics: SHELXTL (Bruker, 2001 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536807062873/bi2265sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536807062873/bi2265Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Co(N3)2(C6H6N4)2]F000 = 836
Mr = 411.29Dx = 1.682 Mg m3
Monoclinic, C2/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 1501 reflections
a = 12.8085 (10) Åθ = 2.8–25.5º
b = 8.7632 (5) ŵ = 1.09 mm1
c = 14.4793 (5) ÅT = 293 (2) K
β = 91.913 (1)ºBlock, red
V = 1624.30 (17) Å30.28 × 0.22 × 0.20 mm
Z = 4
Bruker APEXII CCD diffractometer1501 independent reflections
Radiation source: fine-focus sealed tube1246 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.022
T = 293(2) Kθmax = 25.5º
φ and ω scansθmin = 2.8º
Absorption correction: multi-scan(SADABS; Bruker, 2001)h = −1→15
Tmin = 0.750, Tmax = 0.811k = −1→10
1961 measured reflectionsl = −17→17
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.029H-atom parameters constrained
wR(F2) = 0.078  w = 1/[σ2(Fo2) + (0.032P)2 + 0.7528P] where P = (Fo2 + 2Fc2)/3
S = 1.00(Δ/σ)max = 0.016
1501 reflectionsΔρmax = 0.24 e Å3
124 parametersΔρmin = −0.20 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Co10.2500−0.25000.50000.04053 (15)
C10.08433 (18)−0.0620 (3)0.36274 (15)0.0523 (6)
H10.0724−0.12980.31410.063*
C20.03681 (18)0.0756 (3)0.37190 (15)0.0528 (6)
H2−0.01260.11940.33150.063*
C30.14622 (17)0.0371 (2)0.48932 (14)0.0433 (5)
C40.21008 (17)0.0440 (2)0.57427 (14)0.0437 (5)
C50.32254 (19)−0.0319 (3)0.67815 (16)0.0535 (6)
H50.3710−0.09240.71030.064*
C60.29414 (19)0.1097 (3)0.70284 (16)0.0556 (6)
H60.31820.16440.75430.067*
N10.15295 (14)−0.0854 (2)0.43678 (12)0.0463 (4)
N20.26893 (14)−0.0737 (2)0.59794 (12)0.0475 (4)
N30.38297 (15)−0.1637 (2)0.42685 (13)0.0521 (5)
N40.39621 (15)−0.0323 (2)0.42133 (13)0.0507 (5)
N50.41050 (18)0.0987 (2)0.41471 (16)0.0668 (6)
N60.22221 (15)0.1566 (2)0.63634 (12)0.0506 (5)
H6A0.19050.24320.63480.061*
N70.07654 (14)0.1364 (2)0.45280 (12)0.0484 (4)
H7A0.05980.22300.47610.058*
U11U22U33U12U13U23
Co10.0437 (2)0.0363 (2)0.0409 (2)0.01142 (17)−0.00752 (16)−0.00494 (16)
C10.0524 (13)0.0580 (14)0.0459 (12)0.0139 (11)−0.0072 (10)−0.0039 (10)
C20.0522 (13)0.0585 (15)0.0473 (12)0.0164 (11)−0.0055 (10)0.0043 (11)
C30.0431 (11)0.0417 (12)0.0452 (11)0.0082 (9)0.0015 (9)0.0009 (9)
C40.0455 (11)0.0400 (11)0.0456 (11)0.0047 (10)0.0022 (9)−0.0028 (9)
C50.0556 (13)0.0536 (14)0.0503 (12)0.0048 (11)−0.0100 (10)−0.0019 (11)
C60.0618 (14)0.0551 (15)0.0491 (12)−0.0004 (12)−0.0088 (11)−0.0091 (11)
N10.0474 (10)0.0460 (11)0.0450 (9)0.0112 (9)−0.0048 (8)−0.0042 (8)
N20.0507 (10)0.0442 (10)0.0472 (10)0.0078 (9)−0.0065 (8)−0.0044 (8)
N30.0554 (11)0.0401 (11)0.0605 (11)0.0096 (9)−0.0019 (9)−0.0036 (9)
N40.0488 (11)0.0505 (13)0.0522 (11)0.0128 (9)−0.0073 (9)−0.0070 (9)
N50.0717 (14)0.0417 (12)0.0860 (15)0.0073 (11)−0.0101 (12)−0.0065 (11)
N60.0588 (11)0.0415 (11)0.0514 (10)0.0074 (9)−0.0008 (9)−0.0070 (8)
N70.0531 (11)0.0425 (10)0.0497 (10)0.0148 (9)0.0018 (8)0.0005 (8)
Co1—N12.0945 (17)C3—C41.455 (3)
Co1—N1i2.0945 (17)C4—N21.316 (3)
Co1—N2i2.1055 (18)C4—N61.341 (3)
Co1—N22.1055 (18)C5—C61.344 (3)
Co1—N32.172 (2)C5—N21.379 (3)
Co1—N3i2.172 (2)C5—H50.930
C1—C21.359 (3)C6—N61.373 (3)
C1—N11.379 (3)C6—H60.930
C1—H10.930N3—N41.167 (3)
C2—N71.370 (3)N4—N51.167 (3)
C2—H20.930N6—H6A0.860
C3—N11.320 (3)N7—H7A0.860
C3—N71.343 (3)
N1—Co1—N1i180.00 (8)N2—C4—N6110.49 (19)
N1—Co1—N2i99.06 (7)N2—C4—C3119.23 (19)
N1i—Co1—N2i80.94 (7)N6—C4—C3130.3 (2)
N1—Co1—N280.94 (7)C6—C5—N2109.7 (2)
N1i—Co1—N299.06 (7)C6—C5—H5125.1
N2i—Co1—N2180.0N2—C5—H5125.1
N1—Co1—N390.61 (7)C5—C6—N6105.7 (2)
N1i—Co1—N389.39 (7)C5—C6—H6127.1
N2i—Co1—N390.10 (7)N6—C6—H6127.1
N2—Co1—N389.90 (7)C3—N1—C1105.96 (18)
N1—Co1—N3i89.39 (7)C3—N1—Co1110.93 (13)
N1i—Co1—N3i90.61 (7)C1—N1—Co1142.74 (16)
N2i—Co1—N3i89.90 (7)C4—N2—C5106.00 (19)
N2—Co1—N3i90.10 (7)C4—N2—Co1110.33 (14)
N3—Co1—N3i180.00 (6)C5—N2—Co1143.64 (16)
C2—C1—N1109.4 (2)N4—N3—Co1119.70 (17)
C2—C1—H1125.3N5—N4—N3179.0 (3)
N1—C1—H1125.3C4—N6—C6108.01 (19)
C1—C2—N7105.91 (19)C4—N6—H6A126.0
C1—C2—H2127.0C6—N6—H6A126.0
N7—C2—H2127.0C3—N7—C2107.90 (18)
N1—C3—N7110.83 (19)C3—N7—H7A126.0
N1—C3—C4118.37 (18)C2—N7—H7A126.1
N7—C3—C4130.8 (2)
D—H···AD—HH···AD···AD—H···A
N6—H6A···N5ii0.862.012.819 (3)156
N7—H7A···N5ii0.862.253.012 (3)148
N7—H7A···N3iii0.862.553.049 (3)118
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N6—H6A⋯N5i0.862.012.819 (3)156
N7—H7A⋯N5i0.862.253.012 (3)148
N7—H7A⋯N3ii0.862.553.049 (3)118

Symmetry codes: (i) ; (ii) .

  3 in total

1.  Kinetics of native and activated isozymes of horse liver alcohol dehydrogenase.

Authors:  R T Dworschack; B V Plapp
Journal:  Biochemistry       Date:  1977-01-11       Impact factor: 3.162

2.  Refined crystal structure of carboxypeptidase A at 1.54 A resolution.

Authors:  D C Rees; M Lewis; W N Lipscomb
Journal:  J Mol Biol       Date:  1983-08-05       Impact factor: 5.469

3.  Hydrolysis of esters by carboxypeptidase A requires a penta-coordinate metal ion.

Authors:  L C Kuo; M W Makinen
Journal:  J Biol Chem       Date:  1982-01-10       Impact factor: 5.157

  3 in total

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