| Literature DB >> 21200626 |
Shou-Wen Jin1, Qi-Jun Zhao, Xian-Gang Qian, Ru-Xiang Chen, Yan-Fen Shi.
Abstract
In the title compound, [Cd(NO(3))(2)(C(10)H(11)N(3))(2)], two naph-thyridine ring systems are coordinated to the Cd ion through the two N atoms in a bidentate chelating mode, whereas the remaining coordination sites are occupied by two O atoms from two different nitrate groups to complete the octahedral geometry. Inter-moleular N-H⋯O hydrogen bonds link the mol-ecules to form a one-dimensionnal sheet parallel to the ac plane. Weak slipped π-π stacking involving the naphthyridine ring systems stabilizes the structure.Entities:
Year: 2007 PMID: 21200626 PMCID: PMC2914938 DOI: 10.1107/S160053680706271X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Cd(NO3)2(C10H11N3)2] | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 2793 reflections | |
| θ = 2.4–26.1º | |
| µ = 0.98 mm−1 | |
| α = 95.497 (3)º | |
| β = 95.224 (3)º | Block, colorless |
| γ = 116.865 (3)º | 0.45 × 0.37 × 0.31 mm |
| Bruker SMART diffractometer | 4101 independent reflections |
| Radiation source: fine-focus sealed tube | 3346 reflections with |
| Monochromator: graphite | |
| θmax = 25.0º | |
| φ and ω scans | θmin = 2.4º |
| Absorption correction: multi-scan(SADABS; Sheldrick, 1996) | |
| 6136 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| | |
| (Δ/σ)max = 0.004 | |
| 4101 reflections | Δρmax = 0.67 e Å−3 |
| 320 parameters | Δρmin = −0.36 e Å−3 |
| Primary atom site location: structure-invariant direct methods | Extinction correction: none |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Cd1 | 0.32533 (3) | 0.63678 (3) | 0.248895 (17) | 0.04168 (11) | |
| N1 | 0.3847 (3) | 0.7270 (3) | 0.41178 (18) | 0.0381 (7) | |
| N2 | 0.5294 (3) | 0.6210 (3) | 0.34613 (18) | 0.0385 (7) | |
| N3 | 0.6662 (4) | 0.5103 (4) | 0.2720 (2) | 0.0624 (10) | |
| H3A | 0.6026 | 0.4943 | 0.2228 | 0.075* | |
| H3B | 0.7418 | 0.4820 | 0.2719 | 0.075* | |
| N4 | 0.5509 (4) | 0.8962 (4) | 0.2110 (2) | 0.0448 (7) | |
| N5 | 0.2822 (4) | 0.8123 (3) | 0.17237 (18) | 0.0407 (7) | |
| N6 | 0.0057 (4) | 0.7107 (4) | 0.1316 (2) | 0.0616 (9) | |
| H6A | −0.0097 | 0.6348 | 0.1619 | 0.074* | |
| H6B | −0.0763 | 0.7152 | 0.1034 | 0.074* | |
| N7 | 0.2627 (5) | 0.4197 (4) | 0.0808 (2) | 0.0568 (9) | |
| N8 | 0.0220 (4) | 0.4282 (4) | 0.3115 (2) | 0.0459 (8) | |
| O1 | 0.1458 (4) | 0.4451 (4) | 0.0924 (2) | 0.0826 (10) | |
| O2 | 0.3852 (4) | 0.4845 (4) | 0.1406 (2) | 0.0784 (10) | |
| O3 | 0.2607 (4) | 0.3373 (4) | 0.0126 (2) | 0.0803 (10) | |
| O4 | 0.1344 (3) | 0.3951 (3) | 0.29808 (18) | 0.0550 (7) | |
| O5 | 0.0207 (4) | 0.5429 (4) | 0.27969 (18) | 0.0622 (8) | |
| O6 | −0.0832 (5) | 0.3513 (4) | 0.3543 (2) | 0.0927 (11) | |
| C1 | 0.5092 (4) | 0.6900 (4) | 0.4236 (2) | 0.0342 (8) | |
| C2 | 0.6476 (4) | 0.5792 (4) | 0.3489 (2) | 0.0395 (8) | |
| C3 | 0.7515 (4) | 0.6041 (4) | 0.4305 (2) | 0.0447 (9) | |
| H3 | 0.8323 | 0.5722 | 0.4311 | 0.054* | |
| C4 | 0.7316 (4) | 0.6744 (4) | 0.5071 (2) | 0.0427 (9) | |
| H4 | 0.8013 | 0.6939 | 0.5603 | 0.051* | |
| C5 | 0.6056 (4) | 0.7189 (4) | 0.5074 (2) | 0.0361 (8) | |
| C6 | 0.5702 (4) | 0.7900 (4) | 0.5826 (2) | 0.0403 (8) | |
| C7 | 0.4400 (5) | 0.8216 (4) | 0.5692 (2) | 0.0449 (9) | |
| H7 | 0.4116 | 0.8652 | 0.6181 | 0.054* | |
| C8 | 0.3495 (4) | 0.7898 (4) | 0.4836 (2) | 0.0386 (8) | |
| C9 | 0.6701 (5) | 0.8290 (5) | 0.6740 (2) | 0.0586 (11) | |
| H9A | 0.6225 | 0.8677 | 0.7177 | 0.088* | |
| H9B | 0.7791 | 0.9088 | 0.6724 | 0.088* | |
| H9C | 0.6725 | 0.7356 | 0.6902 | 0.088* | |
| C10 | 0.2099 (5) | 0.8259 (5) | 0.4700 (3) | 0.0533 (10) | |
| H10A | 0.1851 | 0.8294 | 0.4073 | 0.080* | |
| H10B | 0.2383 | 0.9266 | 0.5047 | 0.080* | |
| H10C | 0.1165 | 0.7451 | 0.4893 | 0.080* | |
| C11 | 0.4365 (5) | 0.9236 (4) | 0.1670 (2) | 0.0406 (8) | |
| C12 | 0.1564 (5) | 0.8210 (5) | 0.1283 (2) | 0.0470 (9) | |
| C13 | 0.1818 (6) | 0.9478 (5) | 0.0788 (3) | 0.0560 (11) | |
| H13 | 0.0928 | 0.9539 | 0.0496 | 0.067* | |
| C14 | 0.3334 (6) | 1.0585 (5) | 0.0741 (3) | 0.0571 (11) | |
| H14 | 0.3489 | 1.1410 | 0.0419 | 0.069* | |
| C15 | 0.4704 (5) | 1.0502 (4) | 0.1182 (2) | 0.0466 (9) | |
| C16 | 0.6348 (6) | 1.1545 (5) | 0.1155 (3) | 0.0545 (11) | |
| C17 | 0.7501 (6) | 1.1242 (5) | 0.1602 (3) | 0.0623 (12) | |
| H17 | 0.8598 | 1.1908 | 0.1592 | 0.075* | |
| C18 | 0.7068 (5) | 0.9956 (5) | 0.2072 (3) | 0.0554 (10) | |
| C19 | 0.6828 (6) | 1.2936 (5) | 0.0644 (3) | 0.0732 (14) | |
| H19A | 0.7992 | 1.3479 | 0.0680 | 0.110* | |
| H19B | 0.6461 | 1.3648 | 0.0904 | 0.110* | |
| H19C | 0.6336 | 1.2561 | 0.0023 | 0.110* | |
| C20 | 0.8329 (5) | 0.9635 (6) | 0.2569 (4) | 0.0837 (15) | |
| H20A | 0.8194 | 0.9630 | 0.3193 | 0.126* | |
| H20B | 0.9396 | 1.0446 | 0.2521 | 0.126* | |
| H20C | 0.8206 | 0.8624 | 0.2313 | 0.126* |
| Cd1 | 0.03665 (17) | 0.05040 (19) | 0.03889 (17) | 0.02133 (13) | −0.00124 (11) | 0.01172 (12) |
| N1 | 0.0334 (16) | 0.0441 (18) | 0.0397 (17) | 0.0198 (15) | 0.0055 (13) | 0.0101 (14) |
| N2 | 0.0343 (16) | 0.0515 (19) | 0.0318 (16) | 0.0219 (15) | 0.0033 (13) | 0.0070 (13) |
| N3 | 0.056 (2) | 0.103 (3) | 0.0426 (19) | 0.053 (2) | 0.0011 (16) | −0.0061 (19) |
| N4 | 0.0439 (19) | 0.0461 (19) | 0.0428 (18) | 0.0198 (17) | 0.0060 (15) | 0.0060 (14) |
| N5 | 0.0465 (19) | 0.0442 (18) | 0.0313 (16) | 0.0218 (16) | 0.0004 (14) | 0.0064 (13) |
| N6 | 0.047 (2) | 0.072 (3) | 0.064 (2) | 0.026 (2) | −0.0057 (17) | 0.0254 (19) |
| N7 | 0.076 (3) | 0.057 (2) | 0.041 (2) | 0.037 (2) | −0.0073 (19) | 0.0058 (17) |
| N8 | 0.0391 (18) | 0.054 (2) | 0.0418 (18) | 0.0183 (17) | 0.0073 (15) | 0.0091 (16) |
| O1 | 0.083 (2) | 0.101 (3) | 0.081 (2) | 0.061 (2) | 0.0066 (19) | 0.0053 (19) |
| O2 | 0.073 (2) | 0.100 (3) | 0.0541 (19) | 0.044 (2) | −0.0205 (16) | −0.0151 (17) |
| O3 | 0.111 (3) | 0.096 (3) | 0.0524 (19) | 0.077 (2) | −0.0252 (18) | −0.0190 (17) |
| O4 | 0.0460 (16) | 0.0676 (19) | 0.0608 (18) | 0.0351 (15) | 0.0044 (13) | 0.0099 (14) |
| O5 | 0.072 (2) | 0.071 (2) | 0.0607 (18) | 0.0446 (18) | 0.0102 (15) | 0.0249 (16) |
| O6 | 0.089 (3) | 0.092 (3) | 0.100 (3) | 0.032 (2) | 0.060 (2) | 0.037 (2) |
| C1 | 0.0311 (18) | 0.0372 (19) | 0.0331 (19) | 0.0152 (16) | 0.0029 (15) | 0.0069 (15) |
| C2 | 0.033 (2) | 0.048 (2) | 0.039 (2) | 0.0206 (18) | 0.0045 (16) | 0.0052 (17) |
| C3 | 0.034 (2) | 0.055 (2) | 0.049 (2) | 0.0253 (19) | −0.0001 (17) | 0.0072 (19) |
| C4 | 0.035 (2) | 0.050 (2) | 0.039 (2) | 0.0176 (18) | −0.0038 (16) | 0.0045 (17) |
| C5 | 0.0343 (19) | 0.0355 (19) | 0.0347 (19) | 0.0139 (17) | 0.0013 (15) | 0.0042 (15) |
| C6 | 0.041 (2) | 0.039 (2) | 0.037 (2) | 0.0156 (18) | 0.0013 (16) | 0.0029 (16) |
| C7 | 0.048 (2) | 0.042 (2) | 0.043 (2) | 0.0206 (19) | 0.0096 (18) | 0.0027 (17) |
| C8 | 0.0327 (19) | 0.034 (2) | 0.048 (2) | 0.0130 (16) | 0.0113 (17) | 0.0103 (17) |
| C9 | 0.062 (3) | 0.076 (3) | 0.037 (2) | 0.036 (2) | −0.0058 (19) | −0.006 (2) |
| C10 | 0.046 (2) | 0.059 (3) | 0.067 (3) | 0.032 (2) | 0.014 (2) | 0.014 (2) |
| C11 | 0.050 (2) | 0.037 (2) | 0.0300 (19) | 0.0172 (19) | 0.0063 (17) | −0.0007 (15) |
| C12 | 0.057 (3) | 0.052 (2) | 0.035 (2) | 0.029 (2) | 0.0013 (18) | 0.0076 (18) |
| C13 | 0.069 (3) | 0.062 (3) | 0.046 (2) | 0.038 (3) | 0.003 (2) | 0.015 (2) |
| C14 | 0.090 (4) | 0.051 (3) | 0.041 (2) | 0.040 (3) | 0.013 (2) | 0.0157 (19) |
| C15 | 0.067 (3) | 0.038 (2) | 0.034 (2) | 0.023 (2) | 0.0129 (19) | 0.0019 (17) |
| C16 | 0.075 (3) | 0.040 (2) | 0.036 (2) | 0.016 (2) | 0.014 (2) | −0.0011 (18) |
| C17 | 0.059 (3) | 0.053 (3) | 0.060 (3) | 0.013 (2) | 0.018 (2) | 0.002 (2) |
| C18 | 0.044 (2) | 0.056 (3) | 0.059 (3) | 0.019 (2) | 0.007 (2) | 0.000 (2) |
| C19 | 0.097 (4) | 0.043 (3) | 0.057 (3) | 0.011 (3) | 0.028 (3) | 0.009 (2) |
| C20 | 0.047 (3) | 0.082 (4) | 0.118 (4) | 0.027 (3) | 0.008 (3) | 0.020 (3) |
| Cd1—N5 | 2.284 (3) | C4—H4 | 0.9300 |
| Cd1—O2 | 2.355 (3) | C5—C6 | 1.408 (5) |
| Cd1—N2 | 2.361 (3) | C6—C7 | 1.379 (5) |
| Cd1—O4 | 2.433 (3) | C6—C9 | 1.501 (5) |
| Cd1—N1 | 2.448 (3) | C7—C8 | 1.400 (5) |
| Cd1—N4 | 2.586 (3) | C7—H7 | 0.9300 |
| N1—C8 | 1.326 (4) | C8—C10 | 1.490 (5) |
| N1—C1 | 1.359 (4) | C9—H9A | 0.9600 |
| N2—C2 | 1.328 (4) | C9—H9B | 0.9600 |
| N2—C1 | 1.356 (4) | C9—H9C | 0.9600 |
| N3—C2 | 1.343 (4) | C10—H10A | 0.9600 |
| N3—H3A | 0.8600 | C10—H10B | 0.9600 |
| N3—H3B | 0.8600 | C10—H10C | 0.9600 |
| N4—C18 | 1.339 (5) | C11—C15 | 1.406 (5) |
| N4—C11 | 1.342 (5) | C12—C13 | 1.427 (5) |
| N5—C12 | 1.333 (4) | C13—C14 | 1.342 (6) |
| N5—C11 | 1.364 (5) | C13—H13 | 0.9300 |
| N6—C12 | 1.330 (5) | C14—C15 | 1.422 (6) |
| N6—H6A | 0.8600 | C14—H14 | 0.9300 |
| N6—H6B | 0.8600 | C15—C16 | 1.406 (6) |
| N7—O3 | 1.229 (4) | C16—C17 | 1.370 (6) |
| N7—O1 | 1.241 (4) | C16—C19 | 1.514 (5) |
| N7—O2 | 1.250 (4) | C17—C18 | 1.398 (6) |
| N8—O6 | 1.213 (4) | C17—H17 | 0.9300 |
| N8—O5 | 1.246 (4) | C18—C20 | 1.498 (6) |
| N8—O4 | 1.250 (4) | C19—H19A | 0.9600 |
| C1—C5 | 1.405 (4) | C19—H19B | 0.9600 |
| C2—C3 | 1.423 (5) | C19—H19C | 0.9600 |
| C3—C4 | 1.351 (5) | C20—H20A | 0.9600 |
| C3—H3 | 0.9300 | C20—H20B | 0.9600 |
| C4—C5 | 1.418 (5) | C20—H20C | 0.9600 |
| N5—Cd1—O2 | 104.91 (11) | C7—C6—C9 | 121.4 (3) |
| N5—Cd1—N2 | 140.76 (11) | C5—C6—C9 | 121.2 (3) |
| O2—Cd1—N2 | 84.14 (10) | C6—C7—C8 | 121.6 (3) |
| N5—Cd1—O4 | 130.94 (10) | C6—C7—H7 | 119.2 |
| O2—Cd1—O4 | 89.68 (11) | C8—C7—H7 | 119.2 |
| N2—Cd1—O4 | 86.30 (9) | N1—C8—C7 | 121.4 (3) |
| N5—Cd1—N1 | 111.10 (9) | N1—C8—C10 | 117.6 (3) |
| O2—Cd1—N1 | 139.39 (10) | C7—C8—C10 | 121.0 (3) |
| N2—Cd1—N1 | 56.05 (9) | C6—C9—H9A | 109.5 |
| O4—Cd1—N1 | 80.82 (9) | C6—C9—H9B | 109.5 |
| N5—Cd1—N4 | 54.63 (10) | H9A—C9—H9B | 109.5 |
| O2—Cd1—N4 | 91.13 (11) | C6—C9—H9C | 109.5 |
| N2—Cd1—N4 | 87.67 (10) | H9A—C9—H9C | 109.5 |
| O4—Cd1—N4 | 173.80 (9) | H9B—C9—H9C | 109.5 |
| N1—Cd1—N4 | 94.61 (9) | C8—C10—H10A | 109.5 |
| C8—N1—C1 | 118.2 (3) | C8—C10—H10B | 109.5 |
| C8—N1—Cd1 | 148.2 (2) | H10A—C10—H10B | 109.5 |
| C1—N1—Cd1 | 93.59 (19) | C8—C10—H10C | 109.5 |
| C2—N2—C1 | 118.5 (3) | H10A—C10—H10C | 109.5 |
| C2—N2—Cd1 | 143.8 (2) | H10B—C10—H10C | 109.5 |
| C1—N2—Cd1 | 97.6 (2) | N4—C11—N5 | 112.6 (3) |
| C2—N3—H3A | 120.0 | N4—C11—C15 | 124.2 (4) |
| C2—N3—H3B | 120.0 | N5—C11—C15 | 123.2 (3) |
| H3A—N3—H3B | 120.0 | N6—C12—N5 | 119.3 (3) |
| C18—N4—C11 | 117.4 (3) | N6—C12—C13 | 120.0 (4) |
| C18—N4—Cd1 | 152.3 (3) | N5—C12—C13 | 120.7 (4) |
| C11—N4—Cd1 | 89.8 (2) | C14—C13—C12 | 120.4 (4) |
| C12—N5—C11 | 119.0 (3) | C14—C13—H13 | 119.8 |
| C12—N5—Cd1 | 137.6 (3) | C12—C13—H13 | 119.8 |
| C11—N5—Cd1 | 102.9 (2) | C13—C14—C15 | 120.3 (4) |
| C12—N6—H6A | 120.0 | C13—C14—H14 | 119.8 |
| C12—N6—H6B | 120.0 | C15—C14—H14 | 119.8 |
| H6A—N6—H6B | 120.0 | C11—C15—C16 | 117.8 (4) |
| O3—N7—O1 | 121.8 (4) | C11—C15—C14 | 116.3 (4) |
| O3—N7—O2 | 120.9 (4) | C16—C15—C14 | 125.9 (4) |
| O1—N7—O2 | 117.3 (3) | C17—C16—C15 | 117.4 (4) |
| O6—N8—O5 | 120.6 (3) | C17—C16—C19 | 121.2 (4) |
| O6—N8—O4 | 121.3 (4) | C15—C16—C19 | 121.5 (4) |
| O5—N8—O4 | 118.1 (3) | C16—C17—C18 | 121.5 (4) |
| N7—O2—Cd1 | 105.8 (3) | C16—C17—H17 | 119.2 |
| N8—O4—Cd1 | 100.6 (2) | C18—C17—H17 | 119.2 |
| N2—C1—N1 | 112.7 (3) | N4—C18—C17 | 121.8 (4) |
| N2—C1—C5 | 123.7 (3) | N4—C18—C20 | 116.7 (4) |
| N1—C1—C5 | 123.5 (3) | C17—C18—C20 | 121.6 (4) |
| N2—C2—N3 | 118.1 (3) | C16—C19—H19A | 109.5 |
| N2—C2—C3 | 121.8 (3) | C16—C19—H19B | 109.5 |
| N3—C2—C3 | 120.1 (3) | H19A—C19—H19B | 109.5 |
| C4—C3—C2 | 119.3 (3) | C16—C19—H19C | 109.5 |
| C4—C3—H3 | 120.4 | H19A—C19—H19C | 109.5 |
| C2—C3—H3 | 120.4 | H19B—C19—H19C | 109.5 |
| C3—C4—C5 | 120.7 (3) | C18—C20—H20A | 109.5 |
| C3—C4—H4 | 119.7 | C18—C20—H20B | 109.5 |
| C5—C4—H4 | 119.7 | H20A—C20—H20B | 109.5 |
| C1—C5—C6 | 117.8 (3) | C18—C20—H20C | 109.5 |
| C1—C5—C4 | 116.0 (3) | H20A—C20—H20C | 109.5 |
| C6—C5—C4 | 126.2 (3) | H20B—C20—H20C | 109.5 |
| C7—C6—C5 | 117.4 (3) |
| H··· | ||||
| N3—H3A···O2 | 0.86 | 2.23 | 3.033 (4) | 155 |
| N3—H3B···O5i | 0.86 | 2.38 | 3.161 (4) | 151 |
| N6—H6A···O5 | 0.86 | 2.11 | 2.902 (4) | 153 |
| N6—H6B···O3ii | 0.86 | 2.18 | 2.979 (4) | 154 |
| Centroid 1 | Centroid 2 | α | DCC | τ |
| Cg1 | Cg2iii | 1.32 | 3.862 (2) | 26.0 |
| Cg2 | Cg2iii | 0.0 | 3.823 (2) | 24.5 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N3—H3 | 0.86 | 2.23 | 3.033 (4) | 155 |
| N3—H3 | 0.86 | 2.38 | 3.161 (4) | 151 |
| N6—H6 | 0.86 | 2.11 | 2.902 (4) | 153 |
| N6—H6 | 0.86 | 2.18 | 2.979 (4) | 154 |
Symmetry codes: (i) ; (ii) .
Main π–π interactions (Å, °)
α is the dihedral angle between the planes. DCC is the length of the CC vector (centroid to centroid). τ is the angle(s) subtended by the plane(s) normal to CC (offset angle). Cg1 is the centroid of ring N1/C1/C5–C8; Cg2 is the centroid of ring N2/C1/C5–C2.
| Centroid 1 | Centroid 2 | α | DCC | τ |
|---|---|---|---|---|
| 1.32 | 3.862 (2) | 26 | ||
| 0.0 | 3.823 (2) | 25 |
Symmetry code: (iii) .