Literature DB >> 21200626

Bis(7-amino-2,4-dimethyl-1,8-naphthyridine)dinitratocadmium(II).

Shou-Wen Jin1, Qi-Jun Zhao, Xian-Gang Qian, Ru-Xiang Chen, Yan-Fen Shi.   

Abstract

In the title compound, [Cd(NO(3))(2)(C(10)H(11)N(3))(2)], two naph-thyridine ring systems are coordinated to the Cd ion through the two N atoms in a bidentate chelating mode, whereas the remaining coordination sites are occupied by two O atoms from two different nitrate groups to complete the octahedral geometry. Inter-moleular N-H⋯O hydrogen bonds link the mol-ecules to form a one-dimensionnal sheet parallel to the ac plane. Weak slipped π-π stacking involving the naphthyridine ring systems stabilizes the structure.

Entities:  

Year:  2007        PMID: 21200626      PMCID: PMC2914938          DOI: 10.1107/S160053680706271X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Bayer (1979 ▶); Che et al. (2001 ▶); Gavrilova & Bosnich (2004 ▶); Jin et al. (2007 ▶); Kukrek et al. (2006 ▶); Mintert & Sheldrick (1995a ▶,b ▶); Oskui & Sheldrick (1999 ▶); Oskui, Mintert & Sheldrick (1999 ▶).

Experimental

Crystal data

[Cd(NO3)2(C10H11N3)2] M = 582.86 Triclinic, a = 9.308 (2) Å b = 9.584 (2) Å c = 15.067 (4) Å α = 95.497 (3)° β = 95.224 (3)° γ = 116.865 (3)° V = 1179.8 (5) Å3 Z = 2 Mo Kα radiation μ = 0.98 mm−1 T = 298 (2) K 0.45 × 0.37 × 0.31 mm

Data collection

Bruker SMART diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.667, T max = 0.751 6136 measured reflections 4101 independent reflections 3346 reflections with I > 2σ(I) R int = 0.019

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.081 S = 1.09 4101 reflections 320 parameters H-atom parameters constrained Δρmax = 0.67 e Å−3 Δρmin = −0.36 e Å−3 Data collection: SMART (Bruker, 1999 ▶); cell refinement: SAINT (Bruker, 1999 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997 ▶); molecular graphics: ORTEPIII (Burnett & Johnson, 1996 ▶), ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2003 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053680706271X/dn2283sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680706271X/dn2283Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cd(NO3)2(C10H11N3)2]Z = 2
Mr = 582.86F000 = 588
Triclinic, P1Dx = 1.641 Mg m3
Hall symbol: -P 1Mo Kα radiation λ = 0.71073 Å
a = 9.308 (2) ÅCell parameters from 2793 reflections
b = 9.584 (2) Åθ = 2.4–26.1º
c = 15.067 (4) ŵ = 0.98 mm1
α = 95.497 (3)ºT = 298 (2) K
β = 95.224 (3)ºBlock, colorless
γ = 116.865 (3)º0.45 × 0.37 × 0.31 mm
V = 1179.8 (5) Å3
Bruker SMART diffractometer4101 independent reflections
Radiation source: fine-focus sealed tube3346 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.019
T = 298(2) Kθmax = 25.0º
φ and ω scansθmin = 2.4º
Absorption correction: multi-scan(SADABS; Sheldrick, 1996)h = −11→6
Tmin = 0.667, Tmax = 0.751k = −11→11
6136 measured reflectionsl = −17→17
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.035H-atom parameters constrained
wR(F2) = 0.081  w = 1/[σ2(Fo2) + (0.037P)2 + 0.1524P] where P = (Fo2 + 2Fc2)/3
S = 1.09(Δ/σ)max = 0.004
4101 reflectionsΔρmax = 0.67 e Å3
320 parametersΔρmin = −0.36 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cd10.32533 (3)0.63678 (3)0.248895 (17)0.04168 (11)
N10.3847 (3)0.7270 (3)0.41178 (18)0.0381 (7)
N20.5294 (3)0.6210 (3)0.34613 (18)0.0385 (7)
N30.6662 (4)0.5103 (4)0.2720 (2)0.0624 (10)
H3A0.60260.49430.22280.075*
H3B0.74180.48200.27190.075*
N40.5509 (4)0.8962 (4)0.2110 (2)0.0448 (7)
N50.2822 (4)0.8123 (3)0.17237 (18)0.0407 (7)
N60.0057 (4)0.7107 (4)0.1316 (2)0.0616 (9)
H6A−0.00970.63480.16190.074*
H6B−0.07630.71520.10340.074*
N70.2627 (5)0.4197 (4)0.0808 (2)0.0568 (9)
N80.0220 (4)0.4282 (4)0.3115 (2)0.0459 (8)
O10.1458 (4)0.4451 (4)0.0924 (2)0.0826 (10)
O20.3852 (4)0.4845 (4)0.1406 (2)0.0784 (10)
O30.2607 (4)0.3373 (4)0.0126 (2)0.0803 (10)
O40.1344 (3)0.3951 (3)0.29808 (18)0.0550 (7)
O50.0207 (4)0.5429 (4)0.27969 (18)0.0622 (8)
O6−0.0832 (5)0.3513 (4)0.3543 (2)0.0927 (11)
C10.5092 (4)0.6900 (4)0.4236 (2)0.0342 (8)
C20.6476 (4)0.5792 (4)0.3489 (2)0.0395 (8)
C30.7515 (4)0.6041 (4)0.4305 (2)0.0447 (9)
H30.83230.57220.43110.054*
C40.7316 (4)0.6744 (4)0.5071 (2)0.0427 (9)
H40.80130.69390.56030.051*
C50.6056 (4)0.7189 (4)0.5074 (2)0.0361 (8)
C60.5702 (4)0.7900 (4)0.5826 (2)0.0403 (8)
C70.4400 (5)0.8216 (4)0.5692 (2)0.0449 (9)
H70.41160.86520.61810.054*
C80.3495 (4)0.7898 (4)0.4836 (2)0.0386 (8)
C90.6701 (5)0.8290 (5)0.6740 (2)0.0586 (11)
H9A0.62250.86770.71770.088*
H9B0.77910.90880.67240.088*
H9C0.67250.73560.69020.088*
C100.2099 (5)0.8259 (5)0.4700 (3)0.0533 (10)
H10A0.18510.82940.40730.080*
H10B0.23830.92660.50470.080*
H10C0.11650.74510.48930.080*
C110.4365 (5)0.9236 (4)0.1670 (2)0.0406 (8)
C120.1564 (5)0.8210 (5)0.1283 (2)0.0470 (9)
C130.1818 (6)0.9478 (5)0.0788 (3)0.0560 (11)
H130.09280.95390.04960.067*
C140.3334 (6)1.0585 (5)0.0741 (3)0.0571 (11)
H140.34891.14100.04190.069*
C150.4704 (5)1.0502 (4)0.1182 (2)0.0466 (9)
C160.6348 (6)1.1545 (5)0.1155 (3)0.0545 (11)
C170.7501 (6)1.1242 (5)0.1602 (3)0.0623 (12)
H170.85981.19080.15920.075*
C180.7068 (5)0.9956 (5)0.2072 (3)0.0554 (10)
C190.6828 (6)1.2936 (5)0.0644 (3)0.0732 (14)
H19A0.79921.34790.06800.110*
H19B0.64611.36480.09040.110*
H19C0.63361.25610.00230.110*
C200.8329 (5)0.9635 (6)0.2569 (4)0.0837 (15)
H20A0.81940.96300.31930.126*
H20B0.93961.04460.25210.126*
H20C0.82060.86240.23130.126*
U11U22U33U12U13U23
Cd10.03665 (17)0.05040 (19)0.03889 (17)0.02133 (13)−0.00124 (11)0.01172 (12)
N10.0334 (16)0.0441 (18)0.0397 (17)0.0198 (15)0.0055 (13)0.0101 (14)
N20.0343 (16)0.0515 (19)0.0318 (16)0.0219 (15)0.0033 (13)0.0070 (13)
N30.056 (2)0.103 (3)0.0426 (19)0.053 (2)0.0011 (16)−0.0061 (19)
N40.0439 (19)0.0461 (19)0.0428 (18)0.0198 (17)0.0060 (15)0.0060 (14)
N50.0465 (19)0.0442 (18)0.0313 (16)0.0218 (16)0.0004 (14)0.0064 (13)
N60.047 (2)0.072 (3)0.064 (2)0.026 (2)−0.0057 (17)0.0254 (19)
N70.076 (3)0.057 (2)0.041 (2)0.037 (2)−0.0073 (19)0.0058 (17)
N80.0391 (18)0.054 (2)0.0418 (18)0.0183 (17)0.0073 (15)0.0091 (16)
O10.083 (2)0.101 (3)0.081 (2)0.061 (2)0.0066 (19)0.0053 (19)
O20.073 (2)0.100 (3)0.0541 (19)0.044 (2)−0.0205 (16)−0.0151 (17)
O30.111 (3)0.096 (3)0.0524 (19)0.077 (2)−0.0252 (18)−0.0190 (17)
O40.0460 (16)0.0676 (19)0.0608 (18)0.0351 (15)0.0044 (13)0.0099 (14)
O50.072 (2)0.071 (2)0.0607 (18)0.0446 (18)0.0102 (15)0.0249 (16)
O60.089 (3)0.092 (3)0.100 (3)0.032 (2)0.060 (2)0.037 (2)
C10.0311 (18)0.0372 (19)0.0331 (19)0.0152 (16)0.0029 (15)0.0069 (15)
C20.033 (2)0.048 (2)0.039 (2)0.0206 (18)0.0045 (16)0.0052 (17)
C30.034 (2)0.055 (2)0.049 (2)0.0253 (19)−0.0001 (17)0.0072 (19)
C40.035 (2)0.050 (2)0.039 (2)0.0176 (18)−0.0038 (16)0.0045 (17)
C50.0343 (19)0.0355 (19)0.0347 (19)0.0139 (17)0.0013 (15)0.0042 (15)
C60.041 (2)0.039 (2)0.037 (2)0.0156 (18)0.0013 (16)0.0029 (16)
C70.048 (2)0.042 (2)0.043 (2)0.0206 (19)0.0096 (18)0.0027 (17)
C80.0327 (19)0.034 (2)0.048 (2)0.0130 (16)0.0113 (17)0.0103 (17)
C90.062 (3)0.076 (3)0.037 (2)0.036 (2)−0.0058 (19)−0.006 (2)
C100.046 (2)0.059 (3)0.067 (3)0.032 (2)0.014 (2)0.014 (2)
C110.050 (2)0.037 (2)0.0300 (19)0.0172 (19)0.0063 (17)−0.0007 (15)
C120.057 (3)0.052 (2)0.035 (2)0.029 (2)0.0013 (18)0.0076 (18)
C130.069 (3)0.062 (3)0.046 (2)0.038 (3)0.003 (2)0.015 (2)
C140.090 (4)0.051 (3)0.041 (2)0.040 (3)0.013 (2)0.0157 (19)
C150.067 (3)0.038 (2)0.034 (2)0.023 (2)0.0129 (19)0.0019 (17)
C160.075 (3)0.040 (2)0.036 (2)0.016 (2)0.014 (2)−0.0011 (18)
C170.059 (3)0.053 (3)0.060 (3)0.013 (2)0.018 (2)0.002 (2)
C180.044 (2)0.056 (3)0.059 (3)0.019 (2)0.007 (2)0.000 (2)
C190.097 (4)0.043 (3)0.057 (3)0.011 (3)0.028 (3)0.009 (2)
C200.047 (3)0.082 (4)0.118 (4)0.027 (3)0.008 (3)0.020 (3)
Cd1—N52.284 (3)C4—H40.9300
Cd1—O22.355 (3)C5—C61.408 (5)
Cd1—N22.361 (3)C6—C71.379 (5)
Cd1—O42.433 (3)C6—C91.501 (5)
Cd1—N12.448 (3)C7—C81.400 (5)
Cd1—N42.586 (3)C7—H70.9300
N1—C81.326 (4)C8—C101.490 (5)
N1—C11.359 (4)C9—H9A0.9600
N2—C21.328 (4)C9—H9B0.9600
N2—C11.356 (4)C9—H9C0.9600
N3—C21.343 (4)C10—H10A0.9600
N3—H3A0.8600C10—H10B0.9600
N3—H3B0.8600C10—H10C0.9600
N4—C181.339 (5)C11—C151.406 (5)
N4—C111.342 (5)C12—C131.427 (5)
N5—C121.333 (4)C13—C141.342 (6)
N5—C111.364 (5)C13—H130.9300
N6—C121.330 (5)C14—C151.422 (6)
N6—H6A0.8600C14—H140.9300
N6—H6B0.8600C15—C161.406 (6)
N7—O31.229 (4)C16—C171.370 (6)
N7—O11.241 (4)C16—C191.514 (5)
N7—O21.250 (4)C17—C181.398 (6)
N8—O61.213 (4)C17—H170.9300
N8—O51.246 (4)C18—C201.498 (6)
N8—O41.250 (4)C19—H19A0.9600
C1—C51.405 (4)C19—H19B0.9600
C2—C31.423 (5)C19—H19C0.9600
C3—C41.351 (5)C20—H20A0.9600
C3—H30.9300C20—H20B0.9600
C4—C51.418 (5)C20—H20C0.9600
N5—Cd1—O2104.91 (11)C7—C6—C9121.4 (3)
N5—Cd1—N2140.76 (11)C5—C6—C9121.2 (3)
O2—Cd1—N284.14 (10)C6—C7—C8121.6 (3)
N5—Cd1—O4130.94 (10)C6—C7—H7119.2
O2—Cd1—O489.68 (11)C8—C7—H7119.2
N2—Cd1—O486.30 (9)N1—C8—C7121.4 (3)
N5—Cd1—N1111.10 (9)N1—C8—C10117.6 (3)
O2—Cd1—N1139.39 (10)C7—C8—C10121.0 (3)
N2—Cd1—N156.05 (9)C6—C9—H9A109.5
O4—Cd1—N180.82 (9)C6—C9—H9B109.5
N5—Cd1—N454.63 (10)H9A—C9—H9B109.5
O2—Cd1—N491.13 (11)C6—C9—H9C109.5
N2—Cd1—N487.67 (10)H9A—C9—H9C109.5
O4—Cd1—N4173.80 (9)H9B—C9—H9C109.5
N1—Cd1—N494.61 (9)C8—C10—H10A109.5
C8—N1—C1118.2 (3)C8—C10—H10B109.5
C8—N1—Cd1148.2 (2)H10A—C10—H10B109.5
C1—N1—Cd193.59 (19)C8—C10—H10C109.5
C2—N2—C1118.5 (3)H10A—C10—H10C109.5
C2—N2—Cd1143.8 (2)H10B—C10—H10C109.5
C1—N2—Cd197.6 (2)N4—C11—N5112.6 (3)
C2—N3—H3A120.0N4—C11—C15124.2 (4)
C2—N3—H3B120.0N5—C11—C15123.2 (3)
H3A—N3—H3B120.0N6—C12—N5119.3 (3)
C18—N4—C11117.4 (3)N6—C12—C13120.0 (4)
C18—N4—Cd1152.3 (3)N5—C12—C13120.7 (4)
C11—N4—Cd189.8 (2)C14—C13—C12120.4 (4)
C12—N5—C11119.0 (3)C14—C13—H13119.8
C12—N5—Cd1137.6 (3)C12—C13—H13119.8
C11—N5—Cd1102.9 (2)C13—C14—C15120.3 (4)
C12—N6—H6A120.0C13—C14—H14119.8
C12—N6—H6B120.0C15—C14—H14119.8
H6A—N6—H6B120.0C11—C15—C16117.8 (4)
O3—N7—O1121.8 (4)C11—C15—C14116.3 (4)
O3—N7—O2120.9 (4)C16—C15—C14125.9 (4)
O1—N7—O2117.3 (3)C17—C16—C15117.4 (4)
O6—N8—O5120.6 (3)C17—C16—C19121.2 (4)
O6—N8—O4121.3 (4)C15—C16—C19121.5 (4)
O5—N8—O4118.1 (3)C16—C17—C18121.5 (4)
N7—O2—Cd1105.8 (3)C16—C17—H17119.2
N8—O4—Cd1100.6 (2)C18—C17—H17119.2
N2—C1—N1112.7 (3)N4—C18—C17121.8 (4)
N2—C1—C5123.7 (3)N4—C18—C20116.7 (4)
N1—C1—C5123.5 (3)C17—C18—C20121.6 (4)
N2—C2—N3118.1 (3)C16—C19—H19A109.5
N2—C2—C3121.8 (3)C16—C19—H19B109.5
N3—C2—C3120.1 (3)H19A—C19—H19B109.5
C4—C3—C2119.3 (3)C16—C19—H19C109.5
C4—C3—H3120.4H19A—C19—H19C109.5
C2—C3—H3120.4H19B—C19—H19C109.5
C3—C4—C5120.7 (3)C18—C20—H20A109.5
C3—C4—H4119.7C18—C20—H20B109.5
C5—C4—H4119.7H20A—C20—H20B109.5
C1—C5—C6117.8 (3)C18—C20—H20C109.5
C1—C5—C4116.0 (3)H20A—C20—H20C109.5
C6—C5—C4126.2 (3)H20B—C20—H20C109.5
C7—C6—C5117.4 (3)
D—H···AD—HH···AD···AD—H···A
N3—H3A···O20.862.233.033 (4)155
N3—H3B···O5i0.862.383.161 (4)151
N6—H6A···O50.862.112.902 (4)153
N6—H6B···O3ii0.862.182.979 (4)154
Centroid 1Centroid 2αDCCτ
Cg1Cg2iii1.323.862 (2)26.0
Cg2Cg2iii0.03.823 (2)24.5
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H3A⋯O20.862.233.033 (4)155
N3—H3B⋯O5i0.862.383.161 (4)151
N6—H6A⋯O50.862.112.902 (4)153
N6—H6B⋯O3ii0.862.182.979 (4)154

Symmetry codes: (i) ; (ii) .

Table 2

Main π–π interactions (Å, °)

α is the dihedral angle between the planes. DCC is the length of the CC vector (centroid to centroid). τ is the angle(s) subtended by the plane(s) normal to CC (offset angle). Cg1 is the centroid of ring N1/C1/C5–C8; Cg2 is the centroid of ring N2/C1/C5–C2.

Centroid 1Centroid 2αDCCτ
Cg1Cg2iii1.323.862 (2)26
Cg2Cg2iii0.03.823 (2)25

Symmetry code: (iii) .

  2 in total

1.  Principles of mononucleating and binucleating ligand design.

Authors:  Anna L Gavrilova; Brice Bosnich
Journal:  Chem Rev       Date:  2004-02       Impact factor: 60.622

2.  Photosensitizers containing the 1,8-naphthyridyl moiety and their use in dye-sensitized solar cells.

Authors:  Ahmet Kukrek; Dong Wang; Yuanjun Hou; Ruifa Zong; Randolph Thummel
Journal:  Inorg Chem       Date:  2006-12-11       Impact factor: 5.165

  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.