Literature DB >> 21200613

Bis[2-(pyrimidin-2-ylamino)pyrimidin-ium] hexa-molybdate.

Chun-Wei Yeh1, Chia-Her Lin, Jhy-Der Chen.   

Abstract

The title compound, (C(8)H(8)N(5))(2)[Mo(6)O(19)], was prepared by reaction of Mo(CO)(6) and dipyrimidylamine in refluxing toluene. The hexa-nuclear polyoxomolybdate anions lie on centres of inversion. Each 2-(pyrimidin-2-ylamino)pyrimidinium cation forms an intra-molecular N-H⋯N hydrogen bond and the cations are linked through self-complementary pairs of N-H⋯N hydrogen bonds into dimers across centres of inversion. The cations and anions are inter-linked through C-H⋯O contacts.

Entities:  

Year:  2007        PMID: 21200613      PMCID: PMC2914927          DOI: 10.1107/S1600536807062897

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Shivaiah (2006 ▶); Bridgeman & Cavigliasso (2002 ▶); Shi et al. (2006 ▶); Wang et al. (2004 ▶); Guo et al. (2004 ▶); Burkholder & Zubieta (2004 ▶); Hagrman et al. (1999 ▶).

Experimental

Crystal data

(C8H8N5)2[Mo6O19] M = 1228.03 Monoclinic, a = 10.4338 (19) Å b = 13.7437 (19) Å c = 11.0792 (17) Å β = 105.471 (13)° V = 1531.2 (4) Å3 Z = 2 Mo Kα radiation μ = 2.48 mm−1 T = 295 (2) K 0.40 × 0.20 × 0.05 mm

Data collection

Bruker P4 diffractometer Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.578, T max = 0.883 3399 measured reflections 2660 independent reflections 1833 reflections with I > 2σ(I) R int = 0.082 3 standard reflections every 97 reflections intensity decay: none

Refinement

R[F 2 > 2σ(F 2)] = 0.057 wR(F 2) = 0.146 S = 1.02 2660 reflections 232 parameters H-atom parameters constrained Δρmax = 0.91 e Å−3 Δρmin = −1.78 e Å−3 Data collection: XSCANS (Siemens, 1996 ▶); cell refinement: XSCANS; data reduction: XSCANS program(s) used to solve structure: SHELXS97 (Sheldrick, 1997 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997 ▶); molecular graphics: SHELXTL (Bruker, 1997 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536807062897/bi2259sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536807062897/bi2259Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
(C8H8N5)2[Mo6O19]F000 = 1172
Mr = 1228.03Dx = 2.664 Mg m3
Monoclinic, P21/nMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 31 reflections
a = 10.4338 (19) Åθ = 4.8–12.5º
b = 13.7437 (19) ŵ = 2.48 mm1
c = 11.0792 (17) ÅT = 295 (2) K
β = 105.471 (13)ºPlate, green
V = 1531.2 (4) Å30.40 × 0.20 × 0.05 mm
Z = 2
Bruker P4 diffractometerRint = 0.082
Radiation source: fine-focus sealed tubeθmax = 25.0º
Monochromator: graphiteθmin = 2.4º
T = 295(2) Kh = −1→12
ω scansk = −1→16
Absorption correction: ψ scan(North et al., 1968)l = −13→12
Tmin = 0.578, Tmax = 0.8833 standard reflections
3399 measured reflections every 97 reflections
2660 independent reflections intensity decay: none
1833 reflections with I > 2σ(I)
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.057H-atom parameters constrained
wR(F2) = 0.146  w = 1/[σ2(Fo2) + (0.0858P)2] where P = (Fo2 + 2Fc2)/3
S = 1.02(Δ/σ)max < 0.001
2660 reflectionsΔρmax = 0.91 e Å3
232 parametersΔρmin = −1.78 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Mo10.06601 (9)0.95848 (7)0.32376 (8)0.0380 (3)
Mo2−0.15184 (9)0.87281 (7)0.46013 (9)0.0418 (3)
Mo30.16049 (9)0.89727 (7)0.61876 (9)0.0434 (3)
N10.4384 (8)0.9695 (6)0.3239 (8)0.040 (2)
H1N0.46071.01660.37640.048*
N20.4053 (10)1.0908 (7)0.1792 (9)0.052 (2)
N30.3659 (9)0.9281 (7)0.1128 (8)0.043 (2)
H3N0.36760.86760.13310.052*
N40.4025 (9)0.8036 (6)0.2961 (9)0.046 (2)
N50.4845 (8)0.8709 (6)0.4968 (9)0.040 (2)
O10.1142 (7)0.9318 (7)0.1952 (7)0.065 (2)
O2−0.2622 (8)0.7811 (6)0.4336 (9)0.072 (3)
O30.2743 (9)0.8222 (7)0.7019 (9)0.076 (3)
O40.00001.00000.50000.0286 (19)
O5−0.0732 (7)0.8658 (5)0.3211 (7)0.052 (2)
O60.1775 (7)1.0683 (5)0.3902 (7)0.0414 (17)
O70.1797 (7)0.8825 (5)0.4514 (7)0.0446 (18)
O80.0033 (7)0.8138 (5)0.5623 (8)0.056 (2)
O9−0.0736 (7)1.0520 (6)0.2626 (6)0.052 (2)
O10−0.2525 (6)0.9816 (6)0.3719 (6)0.0465 (19)
C10.4034 (10)0.9955 (8)0.1993 (9)0.041 (3)
C20.3673 (12)1.1171 (10)0.0578 (12)0.060 (3)
H20.36991.18270.03760.072*
C30.3249 (13)1.0509 (11)−0.0372 (12)0.064 (4)
H30.29681.0711−0.12020.077*
C40.3252 (12)0.9553 (10)−0.0069 (11)0.055 (3)
H40.29710.9089−0.06940.066*
C50.4425 (9)0.8789 (7)0.3750 (10)0.037 (2)
C60.4060 (12)0.7135 (9)0.3495 (12)0.054 (3)
H60.37740.65960.29870.064*
C70.4491 (11)0.7019 (8)0.4714 (11)0.048 (3)
H70.45370.64020.50680.057*
C80.4876 (10)0.7831 (8)0.5462 (10)0.046 (3)
H80.51610.77580.63270.055*
U11U22U33U12U13U23
Mo10.0374 (5)0.0496 (6)0.0324 (5)−0.0021 (4)0.0188 (4)−0.0061 (4)
Mo20.0393 (5)0.0414 (5)0.0508 (6)−0.0114 (4)0.0228 (4)−0.0095 (4)
Mo30.0400 (5)0.0502 (6)0.0424 (6)0.0122 (4)0.0151 (4)0.0098 (5)
N10.043 (5)0.041 (5)0.035 (5)−0.002 (4)0.009 (4)−0.005 (4)
N20.059 (6)0.049 (6)0.048 (6)−0.006 (5)0.016 (5)0.000 (5)
N30.053 (5)0.046 (5)0.034 (5)0.004 (4)0.016 (4)−0.005 (4)
N40.047 (5)0.042 (5)0.051 (6)0.003 (4)0.018 (4)−0.007 (5)
N50.036 (5)0.045 (5)0.038 (5)0.004 (4)0.009 (4)0.001 (4)
O10.046 (4)0.120 (7)0.036 (4)−0.014 (5)0.023 (4)−0.025 (5)
O20.069 (6)0.067 (6)0.100 (7)−0.029 (5)0.054 (5)−0.034 (5)
O30.067 (6)0.088 (7)0.075 (6)0.035 (5)0.026 (5)0.038 (5)
O40.024 (4)0.037 (5)0.029 (5)−0.002 (4)0.014 (4)−0.009 (4)
O50.047 (4)0.055 (5)0.061 (5)−0.024 (4)0.029 (4)−0.029 (4)
O60.040 (4)0.042 (4)0.049 (4)0.004 (3)0.025 (3)0.003 (3)
O70.042 (4)0.042 (4)0.058 (5)0.012 (3)0.028 (4)0.003 (4)
O80.062 (5)0.032 (4)0.085 (6)0.012 (4)0.037 (5)0.014 (4)
O90.042 (4)0.083 (6)0.034 (4)0.013 (4)0.017 (3)0.016 (4)
O100.028 (3)0.077 (5)0.035 (4)−0.003 (4)0.009 (3)−0.002 (4)
C10.046 (6)0.047 (7)0.034 (6)−0.002 (5)0.018 (5)0.004 (5)
C20.063 (8)0.066 (8)0.053 (8)0.001 (7)0.021 (7)0.007 (7)
C30.067 (8)0.085 (10)0.039 (7)−0.007 (7)0.011 (6)0.010 (7)
C40.055 (7)0.066 (8)0.046 (8)0.004 (6)0.017 (6)−0.005 (6)
C50.025 (5)0.047 (6)0.038 (6)−0.001 (4)0.008 (4)−0.012 (5)
C60.061 (7)0.044 (7)0.060 (9)0.002 (6)0.023 (6)−0.012 (6)
C70.058 (7)0.035 (6)0.048 (8)0.000 (5)0.011 (6)−0.002 (5)
C80.051 (7)0.052 (7)0.041 (7)0.007 (5)0.023 (5)0.008 (6)
Mo1—O11.673 (7)N3—C11.315 (13)
Mo1—O71.897 (7)N3—C41.333 (14)
Mo1—O91.926 (7)N3—H3N0.860
Mo1—O51.926 (7)N4—C51.347 (13)
Mo1—O61.927 (7)N4—C61.369 (15)
Mo1—O42.3087 (9)N5—C51.308 (13)
Mo2—O21.680 (8)N5—C81.321 (13)
Mo2—O81.892 (8)O4—Mo1i2.3087 (9)
Mo2—O6i1.927 (7)O4—Mo3i2.3137 (9)
Mo2—O51.931 (8)O4—Mo2i2.3210 (9)
Mo2—O101.935 (7)O6—Mo2i1.927 (7)
Mo2—O42.3210 (9)O9—Mo3i1.916 (7)
Mo3—O31.655 (8)O10—Mo3i1.911 (8)
Mo3—O10i1.911 (8)C2—C31.372 (18)
Mo3—O9i1.916 (7)C2—H20.930
Mo3—O71.928 (8)C3—C41.356 (19)
Mo3—O81.963 (8)C3—H30.930
Mo3—O42.3137 (9)C4—H40.930
N1—C51.364 (13)C6—C71.314 (16)
N1—C11.378 (13)C6—H60.930
N1—H1N0.860C7—C81.384 (15)
N2—C11.329 (14)C7—H70.930
N2—C21.347 (15)C8—H80.930
O1—Mo1—O7104.1 (4)C1—N3—H3N120.6
O1—Mo1—O9102.6 (4)C4—N3—H3N120.6
O7—Mo1—O9153.3 (3)C5—N4—C6116.5 (10)
O1—Mo1—O5103.8 (4)C5—N5—C8117.9 (9)
O7—Mo1—O588.1 (3)Mo1i—O4—Mo1180.0
O9—Mo1—O586.5 (4)Mo1i—O4—Mo390.22 (4)
O1—Mo1—O6102.0 (4)Mo1—O4—Mo389.78 (4)
O7—Mo1—O687.3 (3)Mo1i—O4—Mo3i89.78 (4)
O9—Mo1—O686.2 (3)Mo1—O4—Mo3i90.22 (4)
O5—Mo1—O6154.1 (3)Mo3—O4—Mo3i180.0
O1—Mo1—O4178.3 (4)Mo1i—O4—Mo290.27 (3)
O7—Mo1—O476.9 (2)Mo1—O4—Mo289.73 (3)
O9—Mo1—O476.4 (2)Mo3—O4—Mo290.14 (4)
O5—Mo1—O477.4 (2)Mo3i—O4—Mo289.86 (4)
O6—Mo1—O476.7 (2)Mo1i—O4—Mo2i89.73 (3)
O2—Mo2—O8102.7 (4)Mo1—O4—Mo2i90.27 (3)
O2—Mo2—O6i102.7 (4)Mo3—O4—Mo2i89.86 (4)
O8—Mo2—O6i87.6 (3)Mo3i—O4—Mo2i90.14 (4)
O2—Mo2—O5103.9 (3)Mo2—O4—Mo2i180.0
O8—Mo2—O588.8 (4)Mo1—O5—Mo2115.7 (3)
O6i—Mo2—O5153.3 (3)Mo2i—O6—Mo1116.7 (3)
O2—Mo2—O10103.7 (4)Mo1—O7—Mo3117.0 (3)
O8—Mo2—O10153.6 (3)Mo2—O8—Mo3116.7 (3)
O6i—Mo2—O1085.9 (3)Mo3i—O9—Mo1116.9 (3)
O5—Mo2—O1085.6 (3)Mo3i—O10—Mo2116.6 (3)
O2—Mo2—O4179.1 (3)N3—C1—N2125.9 (10)
O8—Mo2—O477.2 (2)N3—C1—N1119.6 (10)
O6i—Mo2—O476.4 (2)N2—C1—N1114.3 (10)
O5—Mo2—O477.0 (2)N2—C2—C3122.4 (13)
O10—Mo2—O476.4 (2)N2—C2—H2118.8
O3—Mo3—O10i103.7 (4)C3—C2—H2118.8
O3—Mo3—O9i104.2 (4)C4—C3—C2118.3 (12)
O10i—Mo3—O9i88.2 (3)C4—C3—H3120.9
O3—Mo3—O7103.1 (4)C2—C3—H3120.9
O10i—Mo3—O788.0 (3)N3—C4—C3119.8 (12)
O9i—Mo3—O7152.6 (3)N3—C4—H4120.1
O3—Mo3—O8103.1 (4)C3—C4—H4120.1
O10i—Mo3—O8153.1 (3)N5—C5—N4124.5 (10)
O9i—Mo3—O885.6 (3)N5—C5—N1118.0 (9)
O7—Mo3—O885.7 (3)N4—C5—N1117.5 (9)
O3—Mo3—O4179.0 (4)C7—C6—N4121.1 (11)
O10i—Mo3—O477.1 (2)C7—C6—H6119.5
O9i—Mo3—O476.4 (2)N4—C6—H6119.5
O7—Mo3—O476.2 (2)C6—C7—C8118.8 (11)
O8—Mo3—O476.0 (2)C6—C7—H7120.6
C5—N1—C1128.6 (9)C8—C7—H7120.6
C5—N1—H1N115.7N5—C8—C7121.2 (10)
C1—N1—H1N115.7N5—C8—H8119.4
C1—N2—C2114.8 (10)C7—C8—H8119.4
C1—N3—C4118.7 (10)
D—H···AD—HH···AD···AD—H···A
N3—H3N···N40.861.952.605 (12)132
N1—H1N···N5ii0.862.072.924 (13)180
C2—H2···O8iii0.932.653.444 (14)144
C4—H4···O2iv0.932.693.391 (14)133
C6—H6···O6v0.932.383.250 (15)157
C7—H7···O1vi0.932.513.196 (14)131
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H3N⋯N40.861.952.605 (12)132
N1—H1N⋯N5i0.862.072.924 (13)180
C2—H2⋯O8ii0.932.653.444 (14)144
C4—H4⋯O2iii0.932.693.391 (14)133
C6—H6⋯O6iv0.932.383.250 (15)157
C7—H7⋯O1v0.932.513.196 (14)131

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

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