Literature DB >> 21200603

catena-Poly[[diazido-manganese(II)]bis-[μ-1-(4-pyridylmeth-yl)-1H-benzimidazole]].

Chun-Sen Liu, Jun-Jie Wang, Li-Fen Yan.   

Abstract

In the title polymeric compound, [Mn(N(3))(2)(C(13)H(11)N(3))(2)](n), each Mn(II) centre is six-coordinated in an octahedral geometry by six N atoms from four 1-(4-pyridylmeth-yl)-1H-benzimidazole (L) ligands and two azide anions (N(3) (-)). Each of the Mn(II) ions lies on an inversion centre. The L ligands and N(3) (-) anions bridge adjacent Mn(II) centres, generating a polymeric chain running along the [110] direction. Adjacent polymeric chains are arranged in a two-dimensional network parallel to the (001) plane, linked by C-H⋯N hydrogen bonds.

Entities:  

Year:  2007        PMID: 21200603      PMCID: PMC2914919          DOI: 10.1107/S1600536807062435

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Chang et al. (2005 ▶); Desiraju & Steiner (1999 ▶); Fan et al. (2006 ▶); Huang et al. (2006 ▶); Kitagawa et al. (2004 ▶); Li et al. (2007 ▶); Meng et al. (2004 ▶); Steel (2005 ▶); Su et al. (2001 ▶); Xiao et al. (2004 ▶).

Experimental

Crystal data

[Mn(N3)2(C13H11N3)2] M = 557.50 Triclinic, a = 8.4135 (17) Å b = 8.5823 (17) Å c = 10.399 (2) Å α = 67.86 (3)° β = 86.03 (3)° γ = 69.80 (3)° V = 651.1 (3) Å3 Z = 1 Mo Kα radiation μ = 0.55 mm−1 T = 294 (2) K 0.36 × 0.32 × 0.30 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 1998 ▶) T min = 0.827, T max = 0.853 6780 measured reflections 2954 independent reflections 2828 reflections with I > 2σ(I) R int = 0.019

Refinement

R[F 2 > 2σ(F 2)] = 0.029 wR(F 2) = 0.081 S = 1.03 2954 reflections 179 parameters H-atom parameters constrained Δρmax = 0.31 e Å−3 Δρmin = −0.23 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT (Bruker, 1998 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997 ▶); molecular graphics: SHELXTL (Bruker, 1998 ▶); software used to prepare material for publication: SHELXTL and PLATON (Spek, 2003 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536807062435/ci2519sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536807062435/ci2519Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Mn(N3)2(C13H11N3)2]Z = 1
Mr = 557.50F000 = 287
Triclinic, P1Dx = 1.422 Mg m3
Hall symbol: -P 1Mo Kα radiation λ = 0.71073 Å
a = 8.4135 (17) ÅCell parameters from 6008 reflections
b = 8.5823 (17) Åθ = 3.2–27.5º
c = 10.399 (2) ŵ = 0.55 mm1
α = 67.86 (3)ºT = 294 (2) K
β = 86.03 (3)ºBlock, yellow
γ = 69.80 (3)º0.36 × 0.32 × 0.30 mm
V = 651.1 (3) Å3
Bruker SMART CCD area-detector diffractometer2954 independent reflections
Radiation source: fine-focus sealed tube2828 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.019
T = 294(2) Kθmax = 27.5º
φ and ω scansθmin = 3.2º
Absorption correction: multi-scan(SADABS; Bruker, 1998)h = −10→10
Tmin = 0.827, Tmax = 0.853k = −11→11
6780 measured reflectionsl = −13→13
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.029  w = 1/[σ2(Fo2) + (0.0415P)2 + 0.2403P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.081(Δ/σ)max = 0.003
S = 1.03Δρmax = 0.31 e Å3
2954 reflectionsΔρmin = −0.23 e Å3
179 parametersExtinction correction: SHELXL97, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.188 (10)
Secondary atom site location: difference Fourier map
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Mn11.00000.00001.00000.02268 (12)
C10.13527 (18)0.75738 (18)0.81818 (14)0.0299 (3)
H10.12250.66350.89540.036*
C20.13205 (16)1.01940 (17)0.68138 (13)0.0259 (3)
C30.19824 (16)0.90468 (18)0.60918 (14)0.0281 (3)
C40.2474 (2)0.9643 (2)0.47385 (16)0.0421 (4)
H40.29140.88700.42690.050*
C50.2277 (3)1.1436 (3)0.41276 (17)0.0511 (4)
H50.25941.18830.32240.061*
C60.1610 (2)1.2603 (2)0.48348 (17)0.0463 (4)
H60.14981.38040.43900.056*
C70.1116 (2)1.20089 (19)0.61774 (16)0.0351 (3)
H70.06651.27890.66390.042*
C80.25306 (18)0.57026 (19)0.67617 (16)0.0332 (3)
H8A0.25160.59760.57680.040*
H8B0.17260.50910.71400.040*
C90.47260 (18)0.26337 (19)0.77339 (17)0.0351 (3)
H90.39600.21850.75250.042*
C100.63090 (19)0.14894 (19)0.83664 (17)0.0365 (3)
H100.65780.02690.85800.044*
C110.70528 (19)0.3804 (2)0.83490 (19)0.0392 (4)
H110.78560.42240.85360.047*
C120.5485 (2)0.5042 (2)0.77332 (19)0.0401 (4)
H120.52430.62540.75380.048*
C130.42862 (16)0.44572 (18)0.74119 (14)0.0265 (3)
N10.09396 (15)0.92194 (15)0.81364 (12)0.0285 (2)
N20.19812 (14)0.73794 (15)0.69955 (12)0.0278 (2)
N30.74795 (14)0.20399 (15)0.86900 (12)0.0297 (3)
N41.10239 (16)0.22079 (17)0.92696 (13)0.0341 (3)
N51.16197 (15)0.28050 (15)0.98900 (12)0.0298 (3)
N61.2213 (2)0.3409 (2)1.04762 (16)0.0492 (4)
U11U22U33U12U13U23
Mn10.02229 (16)0.02034 (16)0.02660 (17)−0.00730 (11)0.00254 (10)−0.01032 (11)
C10.0331 (7)0.0231 (6)0.0295 (6)−0.0071 (5)0.0051 (5)−0.0086 (5)
C20.0241 (6)0.0249 (6)0.0252 (6)−0.0061 (5)−0.0014 (5)−0.0072 (5)
C30.0234 (6)0.0291 (6)0.0277 (6)−0.0055 (5)−0.0001 (5)−0.0092 (5)
C40.0469 (9)0.0503 (9)0.0304 (7)−0.0167 (7)0.0093 (6)−0.0178 (7)
C50.0629 (11)0.0599 (11)0.0269 (7)−0.0293 (9)0.0070 (7)−0.0057 (7)
C60.0581 (10)0.0373 (8)0.0355 (8)−0.0227 (8)−0.0042 (7)0.0016 (7)
C70.0401 (8)0.0274 (7)0.0345 (7)−0.0111 (6)−0.0048 (6)−0.0072 (6)
C80.0279 (7)0.0288 (7)0.0421 (8)−0.0001 (5)−0.0058 (6)−0.0201 (6)
C90.0287 (7)0.0283 (7)0.0514 (9)−0.0073 (6)−0.0056 (6)−0.0194 (6)
C100.0334 (7)0.0244 (7)0.0511 (9)−0.0042 (6)−0.0073 (6)−0.0170 (6)
C110.0303 (7)0.0292 (7)0.0585 (10)−0.0097 (6)−0.0075 (6)−0.0157 (7)
C120.0338 (7)0.0234 (7)0.0604 (10)−0.0065 (6)−0.0077 (7)−0.0141 (7)
C130.0236 (6)0.0257 (6)0.0293 (6)−0.0038 (5)0.0018 (5)−0.0137 (5)
N10.0325 (6)0.0226 (5)0.0280 (6)−0.0073 (4)0.0047 (4)−0.0094 (4)
N20.0262 (5)0.0230 (5)0.0309 (6)−0.0025 (4)0.0012 (4)−0.0118 (4)
N30.0261 (5)0.0259 (6)0.0364 (6)−0.0055 (4)−0.0008 (4)−0.0137 (5)
N40.0392 (7)0.0336 (6)0.0365 (6)−0.0207 (5)0.0047 (5)−0.0135 (5)
N50.0356 (6)0.0219 (5)0.0304 (6)−0.0125 (5)0.0040 (5)−0.0062 (5)
N60.0717 (10)0.0397 (7)0.0456 (8)−0.0301 (7)−0.0050 (7)−0.0148 (6)
Mn1—N42.2049 (13)C6—H60.93
Mn1—N4i2.2049 (13)C7—H70.93
Mn1—N1ii2.2869 (12)C8—N21.4603 (17)
Mn1—N1iii2.2869 (12)C8—C131.5115 (19)
Mn1—N3i2.3358 (16)C8—H8A0.97
Mn1—N32.3358 (16)C8—H8B0.97
C1—N11.3156 (18)C9—C101.379 (2)
C1—N21.3540 (18)C9—C131.3858 (19)
C1—H10.93C9—H90.93
C2—C71.395 (2)C10—N31.3392 (19)
C2—N11.3968 (18)C10—H100.93
C2—C31.4014 (19)C11—N31.3354 (19)
C3—N21.3849 (19)C11—C121.384 (2)
C3—C41.391 (2)C11—H110.93
C4—C51.379 (3)C12—C131.380 (2)
C4—H40.93C12—H120.93
C5—C61.403 (3)N1—Mn1iv2.2869 (12)
C5—H50.93N4—N51.1838 (17)
C6—C71.383 (2)N5—N61.1612 (18)
N4—Mn1—N4i180C6—C7—H7121.3
N4—Mn1—N1ii88.32 (5)C2—C7—H7121.3
N4i—Mn1—N1ii91.68 (5)N2—C8—C13113.50 (11)
N4—Mn1—N1iii91.68 (5)N2—C8—H8A108.9
N4i—Mn1—N1iii88.32 (5)C13—C8—H8A108.9
N1ii—Mn1—N1iii180N2—C8—H8B108.9
N4—Mn1—N3i92.39 (5)C13—C8—H8B108.9
N4i—Mn1—N3i87.61 (5)H8A—C8—H8B107.7
N1ii—Mn1—N3i89.63 (5)C10—C9—C13119.48 (13)
N1iii—Mn1—N3i90.37 (5)C10—C9—H9120.3
N4—Mn1—N387.61 (5)C13—C9—H9120.3
N4i—Mn1—N392.39 (5)N3—C10—C9123.55 (13)
N1ii—Mn1—N390.37 (5)N3—C10—H10118.2
N1iii—Mn1—N389.63 (5)C9—C10—H10118.2
N3i—Mn1—N3180N3—C11—C12123.86 (14)
N1—C1—N2113.45 (12)N3—C11—H11118.1
N1—C1—H1123.3C12—C11—H11118.1
N2—C1—H1123.3C13—C12—C11119.19 (14)
C7—C2—N1130.51 (13)C13—C12—H12120.4
C7—C2—C3120.29 (13)C11—C12—H12120.4
N1—C2—C3109.19 (12)C12—C13—C9117.52 (13)
N2—C3—C4132.11 (14)C12—C13—C8123.05 (12)
N2—C3—C2105.56 (11)C9—C13—C8119.42 (13)
C4—C3—C2122.33 (14)C1—N1—C2105.01 (11)
C5—C4—C3116.72 (15)C1—N1—Mn1iv123.01 (10)
C5—C4—H4121.6C2—N1—Mn1iv131.84 (9)
C3—C4—H4121.6C1—N2—C3106.79 (11)
C4—C5—C6121.63 (15)C1—N2—C8124.89 (12)
C4—C5—H5119.2C3—N2—C8128.32 (12)
C6—C5—H5119.2C11—N3—C10116.38 (12)
C7—C6—C5121.56 (16)C11—N3—Mn1121.80 (10)
C7—C6—H6119.2C10—N3—Mn1121.47 (9)
C5—C6—H6119.2N5—N4—Mn1131.21 (10)
C6—C7—C2117.48 (15)N6—N5—N4178.77 (15)
C7—C2—C3—N2−178.72 (12)N1—C1—N2—C30.08 (16)
N1—C2—C3—N20.39 (15)N1—C1—N2—C8−179.71 (12)
C7—C2—C3—C40.6 (2)C4—C3—N2—C1−179.55 (16)
N1—C2—C3—C4179.75 (13)C2—C3—N2—C1−0.29 (14)
N2—C3—C4—C5179.05 (15)C4—C3—N2—C80.2 (2)
C2—C3—C4—C5−0.1 (2)C2—C3—N2—C8179.50 (12)
C3—C4—C5—C6−0.1 (3)C13—C8—N2—C1−79.95 (18)
C4—C5—C6—C7−0.1 (3)C13—C8—N2—C3100.30 (16)
C5—C6—C7—C20.6 (3)C12—C11—N3—C102.0 (2)
N1—C2—C7—C6−179.76 (15)C12—C11—N3—Mn1−171.37 (14)
C3—C2—C7—C6−0.9 (2)C9—C10—N3—C11−0.9 (2)
C13—C9—C10—N3−0.4 (3)C9—C10—N3—Mn1172.44 (12)
N3—C11—C12—C13−1.7 (3)N4—Mn1—N3—C11−23.66 (13)
C11—C12—C13—C90.2 (2)N4i—Mn1—N3—C11156.34 (13)
C11—C12—C13—C8178.92 (15)N1ii—Mn1—N3—C1164.64 (13)
C10—C9—C13—C120.7 (2)N1iii—Mn1—N3—C11−115.36 (13)
C10—C9—C13—C8−178.01 (14)N4—Mn1—N3—C10163.34 (12)
N2—C8—C13—C12−22.6 (2)N4i—Mn1—N3—C10−16.66 (12)
N2—C8—C13—C9156.11 (14)N1ii—Mn1—N3—C10−108.36 (12)
N2—C1—N1—C20.17 (16)N1iii—Mn1—N3—C1071.64 (12)
N2—C1—N1—Mn1iv−175.95 (9)N1ii—Mn1—N4—N533.89 (14)
C7—C2—N1—C1178.65 (14)N1iii—Mn1—N4—N5−146.11 (14)
C3—C2—N1—C1−0.35 (15)N3i—Mn1—N4—N5−55.67 (14)
C7—C2—N1—Mn1iv−5.7 (2)N3—Mn1—N4—N5124.33 (14)
C3—C2—N1—Mn1iv175.28 (9)
D—H···AD—HH···AD···AD—H···A
C1—H1···N6v0.932.483.319 (1)150
C11—H11···N6vi0.932.583.305 (2)135
Mn1—N42.2049 (13)
Mn1—N1i2.2869 (12)
Mn1—N1ii2.2869 (12)
Mn1—N32.3358 (16)
N4—Mn1—N4iii180
N4—Mn1—N1i88.32 (5)
N4—Mn1—N1ii91.68 (5)
N1i—Mn1—N1ii180
N4—Mn1—N3iii92.39 (5)
N1ii—Mn1—N3iii90.37 (5)
N1i—Mn1—N390.37 (5)
N3iii—Mn1—N3180

Symmetry codes: (i) ; (ii) ; (iii) .

Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C1—H1⋯N6iv0.932.483.319 (1)150
C11—H11⋯N6v0.932.583.305 (2)135

Symmetry codes: (iv) ; (v) .

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