Literature DB >> 21200588

catena-Poly[[dibromidozinc(II)]-μ-3-(1H-benzimidazol-2-yl)[2,6-H(2)]pyridine N-oxide].

Hui-Zhou Luo1, Heng-Yun Ye.   

Abstract

In the crystal structure of the title compound, [ZnBr(2)(C(12)H(7)D(2)N(3)O)](n), the Zn atoms are coordinated by two Br atoms and by one N atom and one O atom of two symmetry-related 3-(1H-benzimidazol-2-yl)[2,6-(2)H(2)]pyridine N-oxide ligands in a slightly distorted tetra-hedral geometry. The ZnBr(2) units are connected by the organic ligands into chains.

Entities:  

Year:  2007        PMID: 21200588      PMCID: PMC2924173          DOI: 10.1107/S1600536807067281

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the deuteration effect (DEF) on physical properties, see: Akutagawa et al. (2004 ▶); Ye et al. (2007 ▶).

Experimental

Crystal data

[ZnBr2(C12H7D2N3O)] M = 438.42 Monoclinic, a = 7.4071 (15) Å b = 15.017 (3) Å c = 12.174 (2) Å β = 98.52 (3)° V = 1339.2 (5) Å3 Z = 4 Mo Kα radiation μ = 7.79 mm−1 T = 293 (2) K 0.2 × 0.15 × 0.1 mm

Data collection

Rigaku Mercury2 diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2005 ▶) T min = 0.261, T max = 0.463 13680 measured reflections 3070 independent reflections 2538 reflections with I > 2σ(I) R int = 0.058

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.072 S = 1.09 3070 reflections 173 parameters H-atom parameters constrained Δρmax = 0.43 e Å−3 Δρmin = −0.57 e Å−3 Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997 ▶); molecular graphics: SHELXTL (Sheldrick, 1999 ▶); software used to prepare material for publication: SHELXTL Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536807067281/nc2082sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536807067281/nc2082Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[ZnBr2(C12H7D2N3O)]F(000) = 840
Mr = 438.42Dx = 2.175 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 12253 reflections
a = 7.4071 (15) Åθ = 3.0–27.5°
b = 15.017 (3) ŵ = 7.79 mm1
c = 12.174 (2) ÅT = 293 K
β = 98.52 (3)°Block, colorless
V = 1339.2 (5) Å30.2 × 0.15 × 0.1 mm
Z = 4
Rigaku Mercury2 diffractometer3070 independent reflections
Radiation source: fine-focus sealed tube2538 reflections with I > 2σ(I)
graphiteRint = 0.058
Detector resolution: 13.6612 pixels mm-1θmax = 27.5°, θmin = 3.0°
ω scansh = −9→9
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005)k = −19→19
Tmin = 0.261, Tmax = 0.463l = −15→15
13680 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.034H-atom parameters constrained
wR(F2) = 0.072w = 1/[σ2(Fo2) + (0.0204P)2 + 0.5716P] where P = (Fo2 + 2Fc2)/3
S = 1.09(Δ/σ)max = 0.001
3070 reflectionsΔρmax = 0.43 e Å3
173 parametersΔρmin = −0.57 e Å3
0 restraintsExtinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0021 (3)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Zn10.18024 (5)0.76280 (2)0.56995 (3)0.02687 (12)
Br10.43934 (6)0.68154 (3)0.53737 (4)0.05495 (15)
Br20.05935 (5)0.71851 (2)0.73359 (3)0.03347 (12)
C10.2625 (4)1.0321 (2)0.4904 (3)0.0270 (7)
C20.2551 (5)1.0978 (2)0.4096 (3)0.0348 (8)
H2B0.27621.15740.42770.042*
C30.2151 (5)1.0700 (3)0.3022 (3)0.0376 (9)
H3A0.20731.11190.24550.045*
C40.1855 (5)0.9800 (3)0.2749 (3)0.0376 (9)
H4A0.16100.96380.20040.045*
C50.1914 (5)0.9149 (2)0.3545 (3)0.0333 (8)
H5A0.17120.85540.33570.040*
C60.2292 (4)0.9425 (2)0.4644 (3)0.0255 (7)
C70.2883 (4)0.9521 (2)0.6446 (3)0.0242 (7)
C80.4011 (4)0.8528 (2)0.8000 (3)0.0258 (7)
D20.44650.81480.75030.031*
C90.3176 (4)0.9318 (2)0.7629 (3)0.0235 (7)
C100.2589 (4)0.9895 (2)0.8391 (3)0.0290 (8)
H10A0.20691.04400.81600.035*
C110.2781 (5)0.9656 (2)0.9485 (3)0.0326 (8)
H11A0.23911.00381.00030.039*
C120.3550 (4)0.8850 (2)0.9822 (3)0.0312 (8)
D10.36450.86791.05620.037*
N10.2441 (3)0.89347 (17)0.5628 (2)0.0246 (6)
N20.2984 (4)1.03547 (18)0.6041 (2)0.0299 (6)
H2A0.32321.08280.64310.036*
N30.4165 (4)0.83101 (18)0.9080 (2)0.0282 (6)
O10.4873 (3)0.75130 (15)0.9391 (2)0.0386 (6)
U11U22U33U12U13U23
Zn10.0340 (2)0.0198 (2)0.0252 (2)−0.00331 (15)−0.00104 (17)−0.00046 (15)
Br10.0509 (3)0.0317 (2)0.0885 (4)0.00727 (18)0.0311 (2)0.0069 (2)
Br20.0438 (2)0.0292 (2)0.0269 (2)−0.00230 (15)0.00361 (15)0.00400 (14)
C10.0279 (18)0.0246 (18)0.0273 (19)−0.0010 (13)0.0006 (14)0.0017 (14)
C20.044 (2)0.0230 (19)0.038 (2)−0.0001 (15)0.0108 (16)0.0038 (15)
C30.037 (2)0.042 (2)0.035 (2)0.0040 (17)0.0088 (16)0.0182 (17)
C40.041 (2)0.048 (3)0.024 (2)−0.0048 (17)0.0054 (16)0.0033 (17)
C50.041 (2)0.030 (2)0.028 (2)−0.0040 (16)0.0037 (15)−0.0001 (15)
C60.0269 (17)0.0226 (18)0.0269 (19)−0.0018 (13)0.0038 (13)0.0011 (14)
C70.0261 (17)0.0191 (17)0.0267 (18)0.0004 (13)0.0015 (13)0.0009 (13)
C80.0300 (18)0.0231 (18)0.0225 (18)−0.0030 (13)−0.0019 (13)−0.0046 (13)
C90.0239 (16)0.0234 (18)0.0220 (17)−0.0039 (13)−0.0007 (13)−0.0014 (13)
C100.0313 (19)0.0235 (19)0.032 (2)0.0028 (14)0.0031 (15)−0.0008 (14)
C110.038 (2)0.032 (2)0.027 (2)0.0069 (15)0.0039 (15)−0.0022 (15)
C120.038 (2)0.032 (2)0.0216 (18)0.0032 (15)−0.0007 (14)−0.0005 (15)
N10.0303 (15)0.0196 (14)0.0218 (15)−0.0021 (11)−0.0024 (11)−0.0004 (11)
N20.0447 (18)0.0187 (15)0.0247 (16)−0.0034 (12)0.0002 (13)−0.0023 (11)
N30.0295 (15)0.0227 (15)0.0284 (16)0.0003 (11)−0.0092 (12)−0.0007 (12)
O10.0521 (16)0.0247 (14)0.0333 (15)0.0125 (11)−0.0125 (12)−0.0008 (10)
Zn1—O1i1.987 (2)C7—N11.333 (4)
Zn1—N12.023 (3)C7—N21.352 (4)
Zn1—Br12.3569 (7)C7—C91.457 (4)
Zn1—Br22.3960 (7)C8—N31.343 (4)
C1—N21.371 (4)C8—C91.383 (4)
C1—C21.388 (5)C8—D20.9300
C1—C61.397 (4)C9—C101.385 (4)
C2—C31.362 (5)C10—C111.367 (5)
C2—H2B0.9300C10—H10A0.9300
C3—C41.402 (5)C11—C121.373 (5)
C3—H3A0.9300C11—H11A0.9300
C4—C51.372 (5)C12—N31.343 (4)
C4—H4A0.9300C12—D10.9300
C5—C61.389 (4)N2—H2A0.8600
C5—H5A0.9300N3—O11.339 (3)
C6—N11.397 (4)O1—Zn1ii1.987 (2)
O1i—Zn1—N1102.35 (10)N2—C7—C9123.1 (3)
O1i—Zn1—Br1108.47 (8)N3—C8—C9119.8 (3)
N1—Zn1—Br1107.08 (8)N3—C8—D2120.1
O1i—Zn1—Br2108.89 (8)C9—C8—D2120.1
N1—Zn1—Br2115.04 (8)C8—C9—C10119.2 (3)
Br1—Zn1—Br2114.22 (3)C8—C9—C7119.7 (3)
N2—C1—C2132.1 (3)C10—C9—C7121.1 (3)
N2—C1—C6105.4 (3)C11—C10—C9119.3 (3)
C2—C1—C6122.5 (3)C11—C10—H10A120.3
C3—C2—C1116.3 (3)C9—C10—H10A120.3
C3—C2—H2B121.9C10—C11—C12120.1 (3)
C1—C2—H2B121.9C10—C11—H11A120.0
C2—C3—C4121.8 (3)C12—C11—H11A120.0
C2—C3—H3A119.1N3—C12—C11119.9 (3)
C4—C3—H3A119.1N3—C12—D1120.0
C5—C4—C3122.1 (3)C11—C12—D1120.0
C5—C4—H4A119.0C7—N1—C6105.8 (3)
C3—C4—H4A119.0C7—N1—Zn1129.9 (2)
C4—C5—C6116.7 (3)C6—N1—Zn1123.9 (2)
C4—C5—H5A121.6C7—N2—C1108.7 (3)
C6—C5—H5A121.6C7—N2—H2A125.6
C5—C6—N1130.5 (3)C1—N2—H2A125.6
C5—C6—C1120.6 (3)O1—N3—C12120.5 (3)
N1—C6—C1108.9 (3)O1—N3—C8117.9 (3)
N1—C7—N2111.1 (3)C12—N3—C8121.6 (3)
N1—C7—C9125.8 (3)N3—O1—Zn1ii121.83 (19)
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Authors:  Qiong Ye; Hong Zhao; Zhi-Rong Qu; Da-Wei Fu; Ren-Gen Xiong; Yi-Ping Cui; Tomoyuki Akutagawa; Philip Wai Hong Chan; Takayoshi Nakamura
Journal:  Angew Chem Int Ed Engl       Date:  2007       Impact factor: 15.336

2.  Proton transfer and a dielectric phase transition in the molecular conductor (HDABCO+)2(TCNQ)3.

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