Literature DB >> 21200555

Pentane-1,5-diammonium tetra-chlorido-palladate(II).

Thierry Maris1.   

Abstract

In the title compound, [NH(3)(CH(2))(5)NH(3)][PdCl(4)], the square-planar [PdCl(4)](2-) anions are centrosymmetric while the diammonium cation lies in a general position. In addition to electrostatic inter-actions, the two species are linked through N-H⋯Cl hydrogen bonds to form a three-dimensional network.

Entities:  

Year:  2007        PMID: 21200555      PMCID: PMC2915137          DOI: 10.1107/S1600536807061430

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

The title compound is isostructural with its tetra­chlorido- and tetra­bromido­cuprate(II) analogues (Garland et al., 1990 ▶). For similar tetra­chlorido­palladate(II) compounds, see: Willett & Willett (1977 ▶); Berg & Søtofte (1976 ▶); Maris et al. (1996 ▶).

Experimental

Crystal data

(C5H16N2)[PdCl4] M = 352.40 Monoclinic, a = 8.091 (2) Å b = 7.276 (2) Å c = 20.843 (5) Å β = 98.279 (2)° V = 1214.2 (5) Å3 Z = 4 Mo Kα radiation μ = 2.37 mm−1 T = 298 K 0.19 × 0.15 × 0.08 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: integration (Blessing; 1989 ▶) T min = 0.662, T max = 0.833 2816 measured reflections 2783 independent reflections 2771 reflections with I > 2σ(I) R int = 0.025 5 standard reflections frequency: 60 min intensity decay: none

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.089 S = 0.99 2783 reflections 112 parameters H-atom parameters constrained Δρmax = 0.74 e Å−3 Δρmin = −0.69 e Å−3 Data collection: CAD-4-PC Software (Enraf–Nonius, 1992 ▶); cell refinement: CAD-4-PC Software; data reduction: modified version of NRC-2/NRC2A (Ahmed et al., 1973 ▶); program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997 ▶); molecular graphics: ATOMS (Dowty, 2003 ▶) and Materials Studio (Accelrys, 2002 ▶); software used to prepare material for publication: UdMX (Maris, 2004 ▶) and publCIF (Westrip, 2007 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536807061430/sj2439sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536807061430/sj2439Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
(C5H16N2)[PdCl4]F000 = 696
Mr = 352.40Dx = 1.928 Mg m3
Monoclinic, P21/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 25 reflections
a = 8.091 (2) Åθ = 7.5–16.8º
b = 7.276 (2) ŵ = 2.37 mm1
c = 20.843 (5) ÅT = 298 K
β = 98.279 (2)ºPlate, dark red
V = 1214.2 (5) Å30.19 × 0.15 × 0.08 mm
Z = 4
Enraf–Nonius CAD-4 diffractometerRint = 0.025
Radiation source: fine-focus sealed tubeθmax = 27.4º
Monochromator: graphiteθmin = 2.0º
T = 298 Kh = −10→10
ω/2θ scansk = 0→9
Absorption correction: integration(Blessing; 1989)l = 0→26
Tmin = 0.662, Tmax = 0.8335 standard reflections
2816 measured reflections every 60 min
2783 independent reflections intensity decay: none
2771 reflections with I > 2σ(I)
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.036H-atom parameters constrained
wR(F2) = 0.089  w = 1/[σ2(Fo2) + (0.0883P)2] where P = (Fo2 + 2Fc2)/3
S = 0.99(Δ/σ)max = 0.003
2783 reflectionsΔρmax = 0.74 e Å3
112 parametersΔρmin = −0.68 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Pd10.00000.00000.00000.01948 (10)
Cl10.09323 (3)0.01856 (2)0.110313 (8)0.03247 (10)
Cl2−0.195673 (16)−0.21942 (2)0.017283 (7)0.02727 (10)
Pd20.50000.50000.00000.01998 (10)
Cl30.711649 (16)0.285055 (19)0.022152 (8)0.02908 (10)
Cl40.51179 (2)0.46485 (3)−0.109913 (8)0.03058 (10)
N10.07248 (18)0.49394 (9)0.10015 (5)0.0386 (2)
H1A0.01980.54720.06450.058*
H1B0.07360.37270.09450.058*
H1C0.17690.53550.10800.058*
C2−0.01184 (11)0.53613 (14)0.15356 (5)0.03569 (19)
H2A−0.12600.49240.14410.043*
H2B−0.01570.66860.15830.043*
C30.06862 (13)0.45279 (14)0.21793 (4)0.0467 (2)
H3A−0.00620.47060.24980.056*
H3B0.08090.32150.21210.056*
C40.23397 (14)0.5307 (2)0.24383 (5)0.0461 (3)
H4A0.22590.66370.24370.055*
H4B0.31370.49640.21540.055*
C50.29934 (12)0.46619 (13)0.31257 (4)0.04003 (19)
H5A0.22170.50390.34150.048*
H5B0.30470.33300.31320.048*
C60.46483 (13)0.54043 (14)0.33643 (4)0.0408 (2)
H6A0.46390.67270.33060.049*
H6B0.54610.48900.31150.049*
N70.51365 (16)0.49611 (10)0.40599 (6)0.0420 (2)
H7A0.61480.54150.41950.063*
H7B0.51510.37470.41120.063*
H7C0.44030.54560.42890.063*
U11U22U33U12U13U23
Pd10.01015 (15)0.01755 (17)0.03049 (14)−0.00113 (1)0.00208 (12)−0.00208 (2)
Cl10.02387 (16)0.04333 (16)0.02952 (15)−0.00249 (6)0.00153 (11)0.00146 (5)
Cl20.01297 (15)0.02395 (15)0.04395 (15)−0.00589 (4)0.00088 (10)0.00250 (5)
Pd20.01077 (15)0.01766 (17)0.03179 (14)0.00019 (1)0.00401 (12)−0.00195 (2)
Cl30.01415 (15)0.02303 (15)0.04964 (15)0.00526 (5)0.00317 (10)−0.00050 (5)
Cl40.02803 (16)0.03239 (15)0.03202 (15)−0.00018 (7)0.00674 (10)0.00025 (5)
N10.0377 (5)0.0413 (5)0.0359 (4)−0.0059 (2)0.0023 (4)−0.0095 (2)
C20.0383 (5)0.0295 (3)0.0379 (4)0.0061 (3)0.0008 (3)−0.0068 (3)
C30.0466 (5)0.0525 (5)0.0396 (4)−0.0105 (4)0.0016 (3)0.0077 (4)
C40.0370 (5)0.0562 (5)0.0433 (5)−0.0005 (4)−0.0005 (4)0.0053 (4)
C50.0324 (5)0.0496 (4)0.0390 (4)−0.0051 (3)0.0082 (3)0.0042 (3)
C60.0456 (5)0.0268 (3)0.0465 (4)−0.0104 (4)−0.0055 (4)0.0088 (3)
N70.0300 (5)0.0518 (5)0.0443 (5)−0.0080 (2)0.0057 (5)0.0125 (3)
Pd1—Cl22.3129 (4)C3—C41.4814 (13)
Pd1—Cl2i2.3129 (4)C3—H3A0.9700
Pd1—Cl12.3183 (6)C3—H3B0.9700
Pd1—Cl1i2.3183 (6)C4—C51.5279 (16)
Pd2—Cl3ii2.3160 (4)C4—H4A0.9700
Pd2—Cl32.3160 (4)C4—H4B0.9700
Pd2—Cl42.3207 (6)C5—C61.4629 (13)
Pd2—Cl4ii2.3207 (6)C5—H5A0.9700
N1—C21.4205 (14)C5—H5B0.9700
N1—H1A0.8900C6—N71.4822 (14)
N1—H1B0.8900C6—H6A0.9700
N1—H1C0.8900C6—H6B0.9700
C2—C31.5298 (13)N7—H7A0.8900
C2—H2A0.9700N7—H7B0.8900
C2—H2B0.9700N7—H7C0.8900
Pd1···Cl3iii3.2044 (9)Pd2···Cl2v3.1788 (9)
Pd1···Cl3iv3.2044 (9)Pd2···Cl2vi3.1789 (9)
Cl2—Pd1—Cl2i180.0C4—C3—H3B108.6
Cl2—Pd1—Cl191.031 (9)C2—C3—H3B108.6
Cl2i—Pd1—Cl188.970 (10)H3A—C3—H3B107.6
Cl2—Pd1—Cl1i88.969 (10)C3—C4—C5113.37 (10)
Cl2i—Pd1—Cl1i91.030 (10)C3—C4—H4A108.9
Cl1—Pd1—Cl1i180.000 (3)C5—C4—H4A108.9
Cl3ii—Pd2—Cl3180.0C3—C4—H4B108.9
Cl3ii—Pd2—Cl490.681 (8)C5—C4—H4B108.9
Cl3—Pd2—Cl489.317 (8)H4A—C4—H4B107.7
Cl3ii—Pd2—Cl4ii89.320 (9)C6—C5—C4112.44 (8)
Cl3—Pd2—Cl4ii90.682 (8)C6—C5—H5A109.1
Cl4—Pd2—Cl4ii180.0C4—C5—H5A109.1
C2—N1—H1A109.5C6—C5—H5B109.1
C2—N1—H1B109.5C4—C5—H5B109.1
H1A—N1—H1B109.5H5A—C5—H5B107.8
C2—N1—H1C109.5C5—C6—N7110.74 (8)
H1A—N1—H1C109.5C5—C6—H6A109.5
H1B—N1—H1C109.5N7—C6—H6A109.5
N1—C2—C3114.20 (9)C5—C6—H6B109.5
N1—C2—H2A108.7N7—C6—H6B109.5
C3—C2—H2A108.7H6A—C6—H6B108.1
N1—C2—H2B108.7C6—N7—H7A109.5
C3—C2—H2B108.7C6—N7—H7B109.5
H2A—C2—H2B107.6H7A—N7—H7B109.5
C4—C3—C2114.57 (9)C6—N7—H7C109.5
C4—C3—H3A108.6H7A—N7—H7C109.5
C2—C3—H3A108.6H7B—N7—H7C109.5
N1—C2—C3—C467.86 (12)C3—C4—C5—C6178.30 (9)
C2—C3—C4—C5171.37 (9)C4—C5—C6—N7172.18 (9)
D—H···AD—HH···AD···AD—H···A
N1—H1B···Cl2i0.892.883.4171 (11)120
N1—H1C···Cl4ii0.892.513.3539 (17)158
N1—H1A···Cl2vii0.892.533.3107 (13)147
N1—H1B···Cl10.892.603.4680 (12)165
N7—H7A···Cl1viii0.892.533.2512 (15)138
N7—H7B···Cl4ix0.892.513.3702 (12)163
N7—H7C···Cl3viii0.892.443.2821 (13)158
N7—H7A···Cl2x0.892.703.4614 (13)145
N7—H7B···Cl3ix0.892.863.3907 (11)120
Table 1

Selected bond lengths (Å)

Pd1—Cl22.3129 (4)
Pd1—Cl12.3183 (6)
Pd2—Cl32.3160 (4)
Pd2—Cl42.3207 (6)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1B⋯Cl2i0.892.883.4171 (11)120
N1—H1C⋯Cl4ii0.892.513.3539 (17)158
N1—H1A⋯Cl2iii0.892.533.3107 (13)147
N1—H1B⋯Cl10.892.603.4680 (12)165
N7—H7A⋯Cl1iv0.892.533.2512 (15)138
N7—H7B⋯Cl4v0.892.513.3702 (12)163
N7—H7C⋯Cl3iv0.892.443.2821 (13)158
N7—H7A⋯Cl2vi0.892.703.4614 (13)145
N7—H7B⋯Cl3v0.892.863.3907 (11)120

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

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Journal:  Methods Enzymol       Date:  1997       Impact factor: 1.600

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