Literature DB >> 21200524

Poly[bis-[μ-1-cyclo-propyl-6-fluoro-4-oxido-7-(1-piperazin-yl)-1,4-dihydro-quinoline-3-carboxyl-ato]nickel(II)].

Zhe An, Lan-Ru Liu, Ya-Qin Liu.   

Abstract

In the title compound, [Ni(C(17)H(17)FN(3)O(3))(2)](n), the Ni(II) atom exists in a distorted trans-NiN(2)O(4) octa-hedral geometry defined by two monodentate N-bonded and two bidentate O,O-bonded 1-cyclo-propyl-6-fluoro-4-oxido-7-(1-piperazin-yl)-1,4-dihydro-quinoline-3-carboxyl-ate (ciprofloxacinium) monoanions. The extended two-dimensional structure is a square grid. The Ni atom lies on a center of inversion.

Entities:  

Year:  2007        PMID: 21200524      PMCID: PMC2915111          DOI: 10.1107/S1600536807065555

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the manganese, zinc and copper complexes of the ciprofloxacinium (cf) anion, see: Xiao et al. (2005 ▶); An et al. (2007 ▶). For background on the medicinal uses of Hcf, see: Mizuki et al. (1996 ▶).

Experimental

Crystal data

[Ni(C17H17FN3O3)2] M = 719.38 Monoclinic, a = 5.9999 (6) Å b = 21.437 (2) Å c = 13.2287 (14) Å β = 101.886 (2)° V = 1665.0 (3) Å3 Z = 2 Mo Kα radiation μ = 0.65 mm−1 T = 295 (2) K 0.34 × 0.26 × 0.18 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.810, T max = 0.892 8098 measured reflections 2890 independent reflections 2466 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.057 wR(F 2) = 0.173 S = 1.00 2890 reflections 226 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 1.92 e Å−3 Δρmin = −0.43 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT-Plus (Bruker, 1998 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997 ▶); molecular graphics: SHELXTL (Bruker, 1998 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536807065555/cs2060sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536807065555/cs2060Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ni(C17H17FN3O3)2]F000 = 748
Mr = 719.38Dx = 1.435 Mg m3
Monoclinic, P21/cMo Kα radiation λ = 0.71073 Å
a = 5.9999 (6) ÅCell parameters from 2967 reflections
b = 21.437 (2) Åθ = 2.5–27.3º
c = 13.2287 (14) ŵ = 0.65 mm1
β = 101.886 (2)ºT = 295 (2) K
V = 1665.0 (3) Å3Block, green
Z = 20.34 × 0.26 × 0.18 mm
Bruker SMART CCD diffractometer2890 independent reflections
Radiation source: fine-focus sealed tube2466 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.030
T = 295(2) Kθmax = 25.1º
ω scansθmin = 2.5º
Absorption correction: multi-scan(SADABS; Sheldrick, 1996)h = −6→7
Tmin = 0.810, Tmax = 0.892k = −25→21
8098 measured reflectionsl = −15→15
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.057H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.173  w = 1/[σ2(Fo2) + (0.1083P)2 + 3.3784P] where P = (Fo2 + 2Fc2)/3
S = 1.00(Δ/σ)max = 0.008
2890 reflectionsΔρmax = 1.92 e Å3
226 parametersΔρmin = −0.43 e Å3
1 restraintExtinction correction: none
Primary atom site location: structure-invariant direct methods
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Ni10.00000.50000.50000.0191 (2)
F10.7020 (4)0.74254 (11)0.67877 (19)0.0407 (6)
O1−0.2122 (4)0.48858 (11)0.6010 (2)0.0254 (6)
O2−0.3432 (6)0.49499 (14)0.7453 (3)0.0489 (9)
O30.1687 (4)0.56702 (11)0.59535 (18)0.0246 (5)
N10.0052 (5)0.65173 (14)0.8485 (2)0.0275 (7)
N20.5762 (5)0.81201 (14)0.8367 (2)0.0266 (7)
N30.7552 (5)0.93356 (13)0.9140 (2)0.0244 (6)
C1−0.2146 (6)0.51226 (17)0.6881 (3)0.0261 (8)
C2−0.0603 (6)0.56768 (15)0.7245 (3)0.0236 (7)
C3−0.1042 (6)0.59953 (17)0.8074 (3)0.0274 (8)
H3−0.21880.58410.83830.033*
C40.1761 (6)0.67679 (16)0.8044 (3)0.0242 (7)
C50.2833 (6)0.73317 (17)0.8400 (3)0.0264 (8)
H50.23700.75420.89370.032*
C60.4567 (6)0.75847 (16)0.7975 (3)0.0243 (7)
C70.5192 (6)0.72338 (17)0.7174 (3)0.0253 (8)
C80.4147 (6)0.67009 (16)0.6793 (3)0.0251 (7)
H80.46050.64980.62490.030*
C90.2363 (6)0.64486 (16)0.7215 (3)0.0232 (7)
C100.1164 (6)0.58960 (15)0.6756 (3)0.0216 (7)
C11−0.0674 (7)0.6856 (2)0.9317 (3)0.0345 (9)
H11−0.13860.72620.91240.041*
C120.0698 (10)0.6814 (3)1.0393 (4)0.0550 (13)
H12A0.08340.71871.08170.066*
H12B0.20350.65481.05120.066*
C13−0.1585 (10)0.6507 (3)1.0120 (4)0.0632 (16)
H13A−0.16290.60551.00750.076*
H13B−0.28290.66941.03790.076*
C140.6114 (8)0.86219 (18)0.7651 (3)0.0360 (9)
H14A0.47030.88500.74250.043*
H14B0.65430.84410.70470.043*
C150.7969 (7)0.90671 (18)0.8177 (3)0.0347 (9)
H15A0.94090.88460.83240.042*
H15B0.81050.94030.77030.042*
C160.7067 (9)0.8829 (2)0.9801 (3)0.0464 (12)
H16A0.66340.90081.04060.056*
H16B0.84520.85911.00350.056*
C170.5196 (8)0.8385 (2)0.9285 (3)0.0458 (12)
H17A0.50180.80540.97620.055*
H17B0.37640.86090.91040.055*
H3N0.641 (6)0.9588 (19)0.902 (4)0.055*
U11U22U33U12U13U23
Ni10.0266 (4)0.0117 (4)0.0186 (4)0.0001 (2)0.0035 (3)−0.0027 (2)
F10.0451 (13)0.0358 (13)0.0491 (14)−0.0169 (10)0.0284 (11)−0.0146 (11)
O10.0311 (13)0.0194 (12)0.0252 (13)−0.0048 (10)0.0042 (10)−0.0037 (10)
O20.067 (2)0.0467 (19)0.0417 (18)−0.0339 (15)0.0306 (17)−0.0182 (13)
O30.0307 (13)0.0206 (12)0.0240 (12)−0.0021 (10)0.0090 (10)−0.0075 (10)
N10.0331 (16)0.0258 (16)0.0263 (16)−0.0096 (12)0.0123 (13)−0.0114 (12)
N20.0389 (17)0.0178 (14)0.0245 (15)−0.0098 (12)0.0101 (13)−0.0055 (12)
N30.0304 (16)0.0155 (14)0.0268 (15)−0.0031 (11)0.0044 (12)−0.0007 (12)
C10.0301 (19)0.0209 (17)0.0271 (19)−0.0049 (14)0.0055 (15)−0.0005 (14)
C20.0299 (18)0.0164 (17)0.0236 (17)−0.0038 (13)0.0040 (14)−0.0030 (13)
C30.0317 (18)0.0248 (18)0.0267 (18)−0.0058 (14)0.0081 (15)−0.0016 (15)
C40.0285 (18)0.0204 (17)0.0246 (18)−0.0042 (14)0.0077 (14)−0.0044 (14)
C50.0320 (19)0.0224 (17)0.0260 (18)−0.0060 (15)0.0088 (15)−0.0087 (14)
C60.0286 (18)0.0185 (17)0.0251 (18)−0.0042 (14)0.0044 (14)−0.0041 (14)
C70.0291 (18)0.0239 (18)0.0253 (18)−0.0054 (14)0.0108 (14)−0.0036 (14)
C80.0312 (18)0.0216 (17)0.0241 (17)−0.0019 (14)0.0092 (14)−0.0039 (14)
C90.0257 (17)0.0217 (17)0.0227 (17)−0.0029 (13)0.0058 (13)−0.0039 (13)
C100.0261 (17)0.0156 (16)0.0221 (17)0.0016 (13)0.0024 (13)−0.0002 (13)
C110.040 (2)0.033 (2)0.034 (2)−0.0064 (17)0.0166 (17)−0.0116 (17)
C120.078 (3)0.056 (3)0.030 (2)−0.009 (3)0.009 (2)−0.014 (2)
C130.094 (4)0.063 (3)0.046 (3)−0.029 (3)0.045 (3)−0.017 (2)
C140.058 (3)0.0240 (19)0.0253 (19)−0.0120 (17)0.0057 (18)−0.0016 (15)
C150.050 (2)0.029 (2)0.029 (2)−0.0149 (17)0.0159 (17)−0.0059 (16)
C160.074 (3)0.039 (2)0.029 (2)−0.035 (2)0.018 (2)−0.0119 (18)
C170.064 (3)0.041 (2)0.040 (2)−0.032 (2)0.028 (2)−0.0232 (19)
Ni1—O32.038 (2)C5—C61.391 (5)
Ni1—O3i2.038 (2)C5—H50.9300
Ni1—O1i2.041 (3)C6—C71.411 (5)
Ni1—O12.041 (3)C7—C81.350 (5)
Ni1—N3ii2.189 (3)C8—C91.412 (5)
Ni1—N3iii2.189 (3)C8—H80.9300
F1—C71.365 (4)C9—C101.453 (5)
O1—C11.261 (5)C11—C131.491 (6)
O2—C11.243 (5)C11—C121.492 (7)
O3—C101.264 (4)C11—H110.9800
N1—C31.353 (5)C12—C131.495 (7)
N1—C41.387 (5)C12—H12A0.9700
N1—C111.459 (5)C12—H12B0.9700
N2—C61.396 (4)C13—H13A0.9700
N2—C171.443 (5)C13—H13B0.9700
N2—C141.476 (5)C14—C151.521 (5)
N3—C161.461 (5)C14—H14A0.9700
N3—C151.466 (5)C14—H14B0.9700
N3—Ni1iv2.189 (3)C15—H15A0.9700
N3—H3N0.861 (10)C15—H15B0.9700
C1—C21.522 (5)C16—C171.521 (6)
C2—C31.363 (5)C16—H16A0.9700
C2—C101.430 (5)C16—H16B0.9700
C3—H30.9300C17—H17A0.9700
C4—C51.404 (5)C17—H17B0.9700
C4—C91.402 (5)
O3—Ni1—O3i180.00 (9)C7—C8—H8119.7
O3—Ni1—O1i91.34 (10)C9—C8—H8119.7
O3i—Ni1—O1i88.66 (10)C4—C9—C8117.4 (3)
O3—Ni1—O188.66 (10)C4—C9—C10122.7 (3)
O3i—Ni1—O191.34 (10)C8—C9—C10119.8 (3)
O1i—Ni1—O1180.000 (1)O3—C10—C2126.1 (3)
O3—Ni1—N3ii93.30 (11)O3—C10—C9118.4 (3)
O3i—Ni1—N3ii86.70 (11)C2—C10—C9115.4 (3)
O1i—Ni1—N3ii91.38 (11)N1—C11—C13119.9 (4)
O1—Ni1—N3ii88.62 (11)N1—C11—C12119.9 (4)
O3—Ni1—N3iii86.70 (11)C13—C11—C1260.2 (3)
O3i—Ni1—N3iii93.30 (11)N1—C11—H11115.3
O1i—Ni1—N3iii88.62 (11)C13—C11—H11115.3
O1—Ni1—N3iii91.38 (11)C12—C11—H11115.3
N3ii—Ni1—N3iii180.000 (1)C11—C12—C1359.9 (3)
C1—O1—Ni1132.5 (2)C11—C12—H12A117.8
C10—O3—Ni1127.7 (2)C13—C12—H12A117.8
C3—N1—C4119.4 (3)C11—C12—H12B117.8
C3—N1—C11121.3 (3)C13—C12—H12B117.8
C4—N1—C11119.1 (3)H12A—C12—H12B114.9
C6—N2—C17116.4 (3)C11—C13—C1260.0 (3)
C6—N2—C14119.4 (3)C11—C13—H13A117.8
C17—N2—C14110.0 (3)C12—C13—H13A117.8
C16—N3—C15108.6 (3)C11—C13—H13B117.8
C16—N3—Ni1iv111.6 (2)C12—C13—H13B117.8
C15—N3—Ni1iv119.4 (2)H13A—C13—H13B114.9
C16—N3—H3N109 (4)N2—C14—C15110.6 (3)
C15—N3—H3N111 (4)N2—C14—H14A109.5
Ni1iv—N3—H3N96 (4)C15—C14—H14A109.5
O2—C1—O1124.1 (3)N2—C14—H14B109.5
O2—C1—C2116.9 (3)C15—C14—H14B109.5
O1—C1—C2118.9 (3)H14A—C14—H14B108.1
C3—C2—C10118.9 (3)N3—C15—C14113.8 (3)
C3—C2—C1116.1 (3)N3—C15—H15A108.8
C10—C2—C1124.9 (3)C14—C15—H15A108.8
N1—C3—C2125.4 (3)N3—C15—H15B108.8
N1—C3—H3117.3C14—C15—H15B108.8
C2—C3—H3117.3H15A—C15—H15B107.7
N1—C4—C5121.3 (3)N3—C16—C17114.6 (4)
N1—C4—C9118.1 (3)N3—C16—H16A108.6
C5—C4—C9120.6 (3)C17—C16—H16A108.6
C6—C5—C4121.9 (3)N3—C16—H16B108.6
C6—C5—H5119.0C17—C16—H16B108.6
C4—C5—H5119.0H16A—C16—H16B107.6
C5—C6—N2122.7 (3)N2—C17—C16110.1 (3)
C5—C6—C7115.6 (3)N2—C17—H17A109.6
N2—C6—C7121.4 (3)C16—C17—H17A109.6
C8—C7—F1117.5 (3)N2—C17—H17B109.6
C8—C7—C6123.8 (3)C16—C17—H17B109.6
F1—C7—C6118.6 (3)H17A—C17—H17B108.2
C7—C8—C9120.5 (3)
D—H···AD—HH···AD···AD—H···A
N3—H3N···O2v0.861 (10)2.48 (4)3.184 (4)139 (5)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H3N⋯O2i0.861 (10)2.48 (4)3.184 (4)139 (5)

Symmetry code: (i) .

  2 in total

1.  Rationally designed, polymeric, extended metal-ciprofloxacin complexes.

Authors:  Dong-Rong Xiao; En-Bo Wang; Hai-Yan An; Zhong-Min Su; Yang-Guang Li; Lei Gao; Chun-Yan Sun; Lin Xu
Journal:  Chemistry       Date:  2005-11-04       Impact factor: 5.236

Review 2.  Pharmacokinetic interactions related to the chemical structures of fluoroquinolones.

Authors:  Y Mizuki; I Fujiwara; T Yamaguchi
Journal:  J Antimicrob Chemother       Date:  1996-05       Impact factor: 5.790

  2 in total

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