Literature DB >> 21200481

(Piperazin-1-ium-κN)tris-(thio-cyanato-κN)zinc(II).

Xiang He1, Hong-Jiang Liu, Ming-Xing Li.   

Abstract

Hydro-thermal reaction of NaSCN, piperazine, Zn(II) and 2,6-naphthalenedicarboxylic acid in aqueous solutions gave rise to the title complex, [Zn(NCS)(3)(C(4)H(11)N(2))]. The Zn(II) atom is four-coordinate with distorted tetra-hedral geometry and lies in a mirror plane. N-H⋯S hydrogen bonds assemble the mol-ecules to form a three-dimensional framework.

Entities:  

Year:  2007        PMID: 21200481      PMCID: PMC2915073          DOI: 10.1107/S1600536807065087

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Bie et al. (2005 ▶); Dai et al. (2002 ▶); Gu et al. (2007 ▶); Liu et al. (2007 ▶); Ouyang et al. (2003 ▶); Tao et al. (2003 ▶).

Experimental

Crystal data

[Zn(NCS)3(C4H11N2)] M = 326.72 Orthorhombic, a = 16.8975 (8) Å b = 11.0467 (4) Å c = 7.3097 (3) Å V = 1364.44 (10) Å3 Z = 4 Mo Kα radiation μ = 2.24 mm−1 T = 293 (2) K 0.40 × 0.20 × 0.15 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.830, T max = 1.000 (expected range = 0.593–0.715) 3079 measured reflections 1237 independent reflections 901 reflections with I > 2σ(I) R int = 0.055

Refinement

R[F 2 > 2σ(F 2)] = 0.064 wR(F 2) = 0.154 S = 1.03 1237 reflections 82 parameters H-atom parameters constrained Δρmax = 0.62 e Å−3 Δρmin = −0.48 e Å−3 Data collection: APEX2 (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997 ▶); molecular graphics: SHELXTL (Bruker, 2000 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536807065087/dn2286sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536807065087/dn2286Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Zn(NCS)3(C4H11N2)]F000 = 664
Mr = 326.72Dx = 1.590 Mg m3
Orthorhombic, PnmaMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ac 2nCell parameters from 75 reflections
a = 16.8975 (8) Åθ = 3.0–25.0º
b = 11.0467 (4) ŵ = 2.24 mm1
c = 7.3097 (3) ÅT = 293 (2) K
V = 1364.44 (10) Å3Prism, colorless
Z = 40.40 × 0.20 × 0.15 mm
Bruker SMART APEXII CCD area-detector diffractometer1237 independent reflections
Radiation source: fine-focus sealed tube901 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.055
T = 293(2) Kθmax = 25.0º
ω scansθmin = 3.0º
Absorption correction: empirical (using intensity measurements)(SADABS; Sheldrick, 1996)h = −19→13
Tmin = 0.830, Tmax = 1.000k = −13→8
3079 measured reflectionsl = −8→7
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.064H-atom parameters constrained
wR(F2) = 0.154  w = 1/[σ2(Fo2) + (0.0605P)2] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max < 0.001
1237 reflectionsΔρmax = 0.62 e Å3
82 parametersΔρmin = −0.48 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Zn10.02672 (5)0.2500−0.08930 (13)0.0469 (4)
S10.10918 (11)0.59639 (14)−0.4058 (3)0.0696 (6)
S2−0.24789 (14)0.2500−0.1884 (4)0.0884 (10)
N10.0695 (3)0.3956 (5)−0.1985 (8)0.0658 (16)
N2−0.0875 (4)0.2500−0.1112 (11)0.073 (2)
N30.0549 (3)0.25000.1831 (8)0.0402 (15)
H3C0.00770.25000.24300.048*
N40.2239 (4)0.25000.2443 (9)0.060 (2)
H4C0.27290.25000.19640.072*
H4D0.22850.25000.36700.072*
C10.0871 (3)0.4790 (5)−0.2800 (8)0.0456 (14)
C2−0.1538 (5)0.2500−0.1416 (11)0.050 (2)
C30.0968 (3)0.1421 (6)0.2496 (9)0.0622 (17)
H3A0.06970.07020.20630.075*
H3B0.09560.14120.38220.075*
C40.1817 (3)0.1387 (5)0.1857 (9)0.0579 (17)
H4A0.20790.06820.23660.069*
H4B0.18330.13230.05340.069*
U11U22U33U12U13U23
Zn10.0334 (6)0.0679 (7)0.0394 (7)0.000−0.0036 (5)0.000
S10.0691 (12)0.0427 (9)0.0970 (15)−0.0117 (8)−0.0099 (11)0.0037 (8)
S20.0325 (14)0.185 (3)0.0474 (17)0.000−0.0027 (12)0.000
N10.057 (4)0.072 (4)0.068 (4)0.000 (3)−0.001 (3)0.028 (3)
N20.033 (4)0.129 (7)0.056 (5)0.000−0.007 (4)0.000
N30.027 (3)0.057 (4)0.037 (4)0.0000.000 (3)0.000
N40.033 (4)0.104 (6)0.044 (5)0.000−0.003 (4)0.000
C10.036 (3)0.055 (4)0.046 (4)0.009 (3)−0.009 (3)−0.014 (3)
C20.044 (6)0.078 (6)0.028 (5)0.0000.004 (4)0.000
C30.054 (4)0.076 (4)0.056 (4)−0.005 (3)−0.004 (4)0.015 (3)
C40.050 (4)0.066 (4)0.057 (4)0.014 (3)−0.007 (3)0.006 (3)
Zn1—N21.937 (8)N3—H3C0.9100
Zn1—N1i1.936 (5)N4—C41.484 (7)
Zn1—N11.936 (5)N4—C4i1.484 (7)
Zn1—N32.048 (6)N4—H4C0.9000
S1—C11.633 (7)N4—H4D0.9000
S2—C21.626 (9)C3—C41.509 (7)
N1—C11.136 (7)C3—H3A0.9700
N2—C21.143 (10)C3—H3B0.9700
N3—C3i1.469 (6)C4—H4A0.9700
N3—C31.469 (6)C4—H4B0.9700
N2—Zn1—N1i109.77 (18)C4—N4—H4D109.2
N2—Zn1—N1109.77 (18)C4i—N4—H4D109.2
N1i—Zn1—N1112.4 (3)H4C—N4—H4D107.9
N2—Zn1—N3108.2 (3)N1—C1—S1176.9 (6)
N1i—Zn1—N3108.30 (19)N2—C2—S2179.0 (8)
N1—Zn1—N3108.30 (19)N3—C3—C4112.1 (5)
C1—N1—Zn1170.9 (5)N3—C3—H3A109.2
C2—N2—Zn1173.5 (8)C4—C3—H3A109.2
C3i—N3—C3108.5 (6)N3—C3—H3B109.2
C3i—N3—Zn1115.7 (4)C4—C3—H3B109.2
C3—N3—Zn1115.7 (4)H3A—C3—H3B107.9
C3i—N3—H3C105.3N4—C4—C3110.3 (5)
C3—N3—H3C105.3N4—C4—H4A109.6
Zn1—N3—H3C105.3C3—C4—H4A109.6
C4—N4—C4i111.9 (6)N4—C4—H4B109.6
C4—N4—H4C109.2C3—C4—H4B109.6
C4i—N4—H4C109.2H4A—C4—H4B108.1
D—H···AD—HH···AD···AD—H···A
N4—H4C···S1ii0.902.723.470 (6)141
N4—H4D···S2iii0.902.383.281 (7)175
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N4—H4C⋯S1i0.902.723.470 (6)141
N4—H4D⋯S2ii0.902.383.281 (7)175

Symmetry codes: (i) ; (ii) .

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Authors:  Jin-Zhong Gu; Wen-Guan Lu; Long Jiang; Hong-Cai Zhou; Tong-Bu Lu
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